Wall clock time and date at job start Tue Mar 31 2020 14:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46493 * 109.47310 * 68.58696 * 3 2 1 5 5 C 1.36977 * 119.99848 * 270.57760 * 4 3 2 6 6 H 1.07992 * 119.99592 * 197.90402 * 5 4 3 7 7 C 1.38965 * 119.99554 * 17.90823 * 5 4 3 8 8 N 1.31420 * 120.00468 * 21.32308 * 7 5 4 9 9 Si 1.86801 * 119.99482 * 201.32059 * 7 5 4 10 10 H 1.48505 * 109.47052 * 90.00384 * 9 7 5 11 11 H 1.48502 * 109.47047 * 209.99849 * 9 7 5 12 12 H 1.48495 * 109.47267 * 330.00061 * 9 7 5 13 13 C 1.34773 * 120.00443 * 90.57787 * 4 3 2 14 14 O 1.21699 * 120.00343 * 185.13943 * 13 4 3 15 15 C 1.46825 * 119.99444 * 5.14154 * 13 4 3 16 16 C 1.36457 * 126.77767 * 310.48272 * 15 13 4 17 17 N 1.35486 * 109.75171 * 180.02562 * 16 15 13 18 18 C 1.46504 * 124.78178 * 179.97438 * 17 16 15 19 19 C 1.53001 * 109.47211 * 265.02312 * 18 17 16 20 20 O 1.42899 * 109.46909 * 180.02562 * 19 18 17 21 21 C 1.42907 * 113.99832 * 179.97438 * 20 19 18 22 22 C 1.37973 * 110.43277 * 0.26362 * 17 16 15 23 23 C 1.39125 * 133.17282 * 180.45543 * 22 17 16 24 24 C 1.37767 * 119.93022 * 179.55464 * 23 22 17 25 25 C 1.38750 * 120.63588 * 359.75911 * 24 23 22 26 26 C 1.37759 * 120.29880 * 359.97438 * 25 24 23 27 27 C 1.39274 * 119.67072 * 0.02562 * 26 25 24 28 28 H 4.40635 * 5.51331 * 180.02562 * 4 1 2 29 29 H 1.09003 * 109.47086 * 308.58111 * 3 2 1 30 30 H 1.09005 * 109.47130 * 188.58851 * 3 2 1 31 31 H 0.96997 * 119.99867 * 180.02562 * 8 7 5 32 32 H 1.08008 * 125.12294 * 0.03308 * 16 15 13 33 33 H 1.09009 * 109.46832 * 145.02262 * 18 17 16 34 34 H 1.08996 * 109.47560 * 25.02588 * 18 17 16 35 35 H 1.08995 * 109.47198 * 60.00021 * 19 18 17 36 36 H 1.09003 * 109.46638 * 300.00063 * 19 18 17 37 37 H 1.08997 * 109.47038 * 179.97438 * 21 20 19 38 38 H 1.08996 * 109.47025 * 300.00153 * 21 20 19 39 39 H 1.09004 * 109.46979 * 60.00004 * 21 20 19 40 40 H 1.08003 * 120.02840 * 359.29373 * 23 22 17 41 41 H 1.07998 * 119.68395 * 179.73907 * 24 23 22 42 42 H 1.07994 * 119.85227 * 179.97438 * 25 24 23 43 43 H 1.08005 * 120.16600 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1346 -0.5034 -1.2858 5 6 3.3522 -1.8448 -1.4575 6 1 3.9702 -2.1915 -2.2725 7 6 2.7778 -2.7594 -0.5831 8 7 1.7247 -2.4189 0.1256 9 14 3.5024 -4.4729 -0.4151 10 1 4.5318 -4.4722 0.6553 11 1 2.4254 -5.4337 -0.0654 12 1 4.1260 -4.8749 -1.7014 13 6 3.3700 0.3527 -2.2998 14 8 3.6857 -0.0734 -3.3951 15 6 3.2456 1.7995 -2.0828 16 6 2.1969 2.4513 -1.5020 17 7 2.4424 3.7835 -1.4780 18 6 1.5327 4.7912 -0.9272 19 6 0.6720 5.3704 -2.0517 20 8 -0.2149 6.3537 -1.5145 21 6 -1.0677 6.9608 -2.4873 22 6 3.6669 4.0580 -2.0513 23 6 4.3761 5.2360 -2.2635 24 6 5.6126 5.1944 -2.8695 25 6 6.1642 3.9853 -3.2683 26 6 5.4799 2.8075 -3.0620 27 6 4.2289 2.8350 -2.4505 28 1 -1.0498 0.0001 -0.0002 29 1 3.0097 -0.6401 0.8034 30 1 3.0089 1.0170 0.1535 31 1 1.3240 -3.0572 0.7362 32 1 1.3055 1.9767 -1.1189 33 1 2.1125 5.5902 -0.4650 34 1 0.8893 4.3294 -0.1783 35 1 0.0922 4.5715 -2.5139 36 1 1.3155 5.8324 -2.8005 37 1 -1.7099 7.6945 -2.0002 38 1 -0.4601 7.4554 -3.2451 39 1 -1.6839 6.1950 -2.9586 40 1 3.9557 6.1826 -1.9572 41 1 6.1577 6.1117 -3.0360 42 1 7.1342 3.9674 -3.7426 43 1 5.9111 1.8676 -3.3736 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282092938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:17 Heat of formation + Delta-G solvation = 44.180738 kcal Electronic energy + Delta-G solvation = -27443.039692 eV Core-core repulsion = 23649.006698 eV Total energy + Delta-G solvation = -3794.032994 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.53842 -40.17118 -39.00826 -37.95142 -37.03173 -34.51948 -33.74465 -33.08323 -31.68092 -30.07488 -29.66314 -28.17878 -27.31225 -26.53039 -24.49485 -23.77344 -23.10100 -21.74095 -20.40670 -19.70283 -18.55831 -18.26630 -17.79047 -17.40110 -17.07856 -16.92757 -16.54518 -16.33322 -16.02895 -15.83148 -15.74720 -15.10662 -14.91834 -14.79962 -14.36272 -14.34011 -14.14727 -13.88284 -13.53614 -13.31938 -13.25443 -12.80811 -12.62486 -12.51652 -12.41472 -12.37100 -12.18941 -12.07942 -11.84641 -11.19871 -11.06902 -10.76946 -10.67622 -10.61149 -10.34206 -9.86495 -9.19064 -8.61630 -8.26915 -5.93506 0.09871 0.64148 1.18342 1.41612 1.43462 1.52246 1.55301 2.10026 2.19680 2.34455 2.42199 2.83190 2.98377 3.05347 3.31557 3.65199 3.73451 3.82964 3.91956 3.93530 4.06819 4.23017 4.24496 4.32495 4.39800 4.49288 4.51323 4.59919 4.64509 4.68514 4.73519 4.78739 4.83882 4.87398 4.88837 5.14667 5.44359 5.46015 5.52638 5.62630 5.74667 5.77287 6.01192 6.07597 6.16643 6.31130 6.47029 7.13523 7.19816 7.39935 8.00604 8.65145 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012665 B = 0.004129 C = 0.003278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2210.353617 B = 6778.873271 C = 8538.841392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.139 4.139 3 C 0.239 3.761 4 N -0.442 5.442 5 C -0.355 4.355 6 H 0.072 0.928 7 C 0.006 3.994 8 N -0.863 5.863 9 Si 0.986 3.014 10 H -0.264 1.264 11 H -0.274 1.274 12 H -0.279 1.279 13 C 0.509 3.491 14 O -0.635 6.635 15 C -0.230 4.230 16 C 0.100 3.900 17 N -0.463 5.463 18 C 0.110 3.890 19 C 0.050 3.950 20 O -0.400 6.400 21 C 0.026 3.974 22 C 0.085 3.915 23 C -0.120 4.120 24 C -0.096 4.096 25 C -0.137 4.137 26 C -0.098 4.098 27 C -0.101 4.101 28 H 0.232 0.768 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.273 0.727 32 H 0.180 0.820 33 H 0.120 0.880 34 H 0.111 0.889 35 H 0.047 0.953 36 H 0.060 0.940 37 H 0.106 0.894 38 H 0.051 0.949 39 H 0.044 0.956 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.146 0.854 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.025 20.865 1.883 21.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.141 4.141 3 C 0.117 3.883 4 N -0.159 5.159 5 C -0.482 4.482 6 H 0.090 0.910 7 C -0.198 4.198 8 N -0.499 5.499 9 Si 0.809 3.191 10 H -0.189 1.189 11 H -0.199 1.199 12 H -0.204 1.204 13 C 0.300 3.700 14 O -0.523 6.523 15 C -0.240 4.240 16 C -0.030 4.030 17 N -0.146 5.146 18 C -0.011 4.011 19 C -0.028 4.028 20 O -0.319 6.319 21 C -0.070 4.070 22 C -0.019 4.019 23 C -0.140 4.140 24 C -0.114 4.114 25 C -0.155 4.155 26 C -0.117 4.117 27 C -0.106 4.106 28 H 0.249 0.751 29 H 0.100 0.900 30 H 0.105 0.895 31 H 0.084 0.916 32 H 0.197 0.803 33 H 0.138 0.862 34 H 0.129 0.871 35 H 0.065 0.935 36 H 0.079 0.921 37 H 0.124 0.876 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.171 0.829 41 H 0.184 0.816 42 H 0.164 0.836 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -2.224 20.822 1.868 21.023 hybrid contribution -0.153 -1.921 -0.486 1.987 sum -2.377 18.901 1.383 19.100 Atomic orbital electron populations 1.24988 0.96054 1.05251 0.99934 1.23026 0.94453 0.96288 1.00359 1.18172 0.85307 0.98254 0.86589 1.43767 1.56009 1.06221 1.09860 1.19563 1.30824 0.81791 1.16042 0.90971 1.25999 0.94475 1.02955 0.96365 1.70150 1.16841 1.37189 1.25713 0.85060 0.78220 0.77208 0.78576 1.18942 1.19927 1.20413 1.17727 0.82981 0.85711 0.83544 1.90552 1.55903 1.79926 1.25936 1.20118 0.99051 0.92087 1.12792 1.22239 0.99217 0.82787 0.98709 1.43559 1.15206 1.05255 1.50531 1.21755 0.92222 0.91333 0.95763 1.22747 0.92451 0.91557 0.96002 1.87766 1.52634 1.55499 1.35997 1.22976 0.93558 0.97779 0.92688 1.18472 0.87226 0.95243 1.00928 1.20401 0.95474 0.94926 1.03202 1.21225 0.94458 0.98555 0.97210 1.21204 1.00912 0.91412 1.02009 1.20630 0.93430 0.99102 0.98574 1.19103 0.95889 0.91885 1.03699 0.75123 0.89991 0.89492 0.91646 0.80321 0.86235 0.87064 0.93498 0.92141 0.87586 0.92990 0.93745 0.82872 0.81604 0.83595 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.51 18.81 74.32 1.40 -8.11 16 2 C -0.14 -6.14 8.72 31.13 0.27 -5.87 16 3 C 0.24 11.13 4.77 84.58 0.40 11.53 16 4 N -0.44 -24.29 2.58 -649.77 -1.68 -25.97 16 5 C -0.35 -20.97 9.29 84.06 0.78 -20.18 16 6 H 0.07 4.61 7.43 -2.91 -0.02 4.59 16 7 C 0.01 0.33 4.89 84.93 0.42 0.75 16 8 N -0.86 -45.23 9.01 21.67 0.20 -45.04 16 9 Si 0.99 43.03 29.60 68.60 2.03 45.06 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 C 0.51 28.30 7.51 86.49 0.65 28.95 16 14 O -0.63 -40.58 16.79 -4.34 -0.07 -40.65 16 15 C -0.23 -10.30 5.16 -19.02 -0.10 -10.40 16 16 C 0.10 3.62 9.11 83.71 0.76 4.38 16 17 N -0.46 -13.07 2.74 -515.16 -1.41 -14.49 16 18 C 0.11 2.13 6.32 86.38 0.55 2.68 16 19 C 0.05 0.95 6.26 71.98 0.45 1.40 16 20 O -0.40 -7.29 10.70 -148.98 -1.59 -8.88 16 21 C 0.03 0.33 11.01 113.37 1.25 1.58 16 22 C 0.09 2.59 6.79 38.91 0.26 2.86 16 23 C -0.12 -2.68 9.97 22.37 0.22 -2.45 16 24 C -0.10 -1.98 10.01 22.28 0.22 -1.76 16 25 C -0.14 -3.61 10.03 22.28 0.22 -3.38 16 26 C -0.10 -3.64 10.09 22.41 0.23 -3.41 16 27 C -0.10 -3.99 6.36 -20.07 -0.13 -4.12 16 28 H 0.23 6.99 7.80 -4.43 -0.03 6.96 16 29 H 0.08 3.98 6.91 -2.39 -0.02 3.97 16 30 H 0.09 3.59 5.88 -2.38 -0.01 3.58 16 31 H 0.27 13.48 8.31 -92.71 -0.77 12.71 16 32 H 0.18 6.31 5.38 -2.91 -0.02 6.30 16 33 H 0.12 1.80 8.14 -2.38 -0.02 1.78 16 34 H 0.11 1.98 8.11 -2.39 -0.02 1.96 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.98 16 36 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 40 H 0.15 2.28 8.06 -2.91 -0.02 2.26 16 41 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 42 H 0.15 3.00 8.06 -2.91 -0.02 2.97 16 43 H 0.10 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -77.59 368.76 6.35 -71.24 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 1.02 Total: 24.29 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 7.86 Total: -5.56 kcal Atomic # 7 Polarization: -82.60 SS G_CDS: -2.90 Total: -85.49 kcal Atomic # 8 Polarization: -47.87 SS G_CDS: -1.67 Total: -49.54 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.06 kcal Total: -77.59 6.35 -71.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282092938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.426 kcal (2) G-P(sol) polarization free energy of solvation -77.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds