Wall clock time and date at job start Tue Mar 31 2020 14:05:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34226 * 125.74056 * 2 1 4 4 C 1.38127 * 107.40295 * 179.97438 * 3 2 1 5 5 C 1.47291 * 126.42500 * 180.02562 * 4 3 2 6 6 O 1.21515 * 120.00277 * 179.97438 * 5 4 3 7 7 O 1.34756 * 119.99813 * 359.96877 * 5 4 3 8 8 C 1.45202 * 116.99713 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46931 * 180.02562 * 8 7 5 10 10 C 1.38641 * 119.74747 * 269.72981 * 9 8 7 11 11 C 1.37619 * 120.24387 * 179.72157 * 10 9 8 12 12 C 1.40713 * 119.74663 * 0.57057 * 11 10 9 13 13 C 1.41399 * 120.24563 * 179.68428 * 12 11 10 14 14 H 1.07997 * 119.99939 * 204.40585 * 13 12 11 15 15 C 1.39949 * 119.99924 * 24.39599 * 13 12 11 16 16 N 1.30829 * 119.99727 * 17.86634 * 15 13 12 17 17 Si 1.86797 * 120.00055 * 197.85843 * 15 13 12 18 18 H 1.48497 * 109.47124 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46958 * 120.00394 * 17 15 13 20 20 H 1.48497 * 109.47120 * 240.00394 * 17 15 13 21 21 C 1.40715 * 119.51357 * 359.70159 * 12 11 10 22 22 C 1.37623 * 119.74461 * 0.02562 * 21 12 11 23 23 C 1.41341 * 107.14774 * 0.02562 * 4 3 2 24 24 C 1.50702 * 125.98963 * 179.73874 * 23 4 3 25 25 C 1.53003 * 117.49648 * 188.61668 * 24 23 4 26 26 C 1.52997 * 59.99996 * 252.51148 * 25 24 23 27 27 N 1.30432 * 108.01485 * 359.97438 * 23 4 3 28 28 H 1.09006 * 109.47065 * 90.00100 * 1 2 3 29 29 H 1.08994 * 109.46771 * 209.99931 * 1 2 3 30 30 H 1.08994 * 109.46931 * 330.00371 * 1 2 3 31 31 H 1.07998 * 126.29676 * 359.95730 * 3 2 1 32 32 H 1.08999 * 109.47150 * 300.00335 * 8 7 5 33 33 H 1.09000 * 109.47027 * 60.01065 * 8 7 5 34 34 H 1.08002 * 119.87506 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.12485 * 180.28306 * 11 10 9 36 36 H 0.96997 * 119.99673 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.12615 * 179.97438 * 21 12 11 38 38 H 1.07997 * 119.87733 * 179.97438 * 22 21 12 39 39 H 1.08999 * 115.55056 * 334.32568 * 24 23 4 40 40 H 1.09003 * 117.49807 * 0.02562 * 25 24 23 41 41 H 1.09001 * 117.49764 * 145.01773 * 25 24 23 42 42 H 1.08999 * 117.50106 * 252.50743 * 26 25 24 43 43 H 1.09001 * 117.51911 * 107.48454 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5602 0.6549 0.0006 5 6 4.7632 1.5047 0.0013 6 8 5.8667 0.9958 0.0023 7 8 4.6402 2.8467 0.0009 8 6 5.8684 3.6212 0.0022 9 6 5.5354 5.0909 0.0021 10 6 5.3901 5.7633 -1.2017 11 6 5.0804 7.1041 -1.2138 12 6 4.9231 7.7953 0.0018 13 6 4.6115 9.1745 0.0017 14 1 4.8686 9.7863 0.8537 15 6 3.9700 9.7469 -1.1027 16 7 3.3504 8.9846 -1.9667 17 14 3.9984 11.5991 -1.3428 18 1 4.7598 12.2303 -0.2350 19 1 4.6512 11.9204 -2.6375 20 1 2.6075 12.1191 -1.3472 21 6 5.0784 7.1039 1.2175 22 6 5.3826 5.7618 1.2057 23 6 3.5309 -0.7582 0.0003 24 6 4.7316 -1.6689 -0.0048 25 6 4.4827 -3.1649 -0.2075 26 6 4.8891 -2.6367 1.1697 27 7 2.2824 -1.1357 0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9160 2.1168 -0.0006 32 1 6.4487 3.3805 0.8930 33 1 6.4508 3.3803 -0.8871 34 1 5.5165 5.2318 -2.1333 35 1 4.9632 7.6249 -2.1526 36 1 2.9061 9.3813 -2.7323 37 1 4.9603 7.6248 2.1562 38 1 5.5027 5.2292 2.1375 39 1 5.6400 -1.2467 -0.4344 40 1 3.4505 -3.4903 -0.3376 41 1 5.2274 -3.7272 -0.7708 42 1 5.9012 -2.8516 1.5126 43 1 4.1246 -2.6145 1.9463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291392732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:05 Heat of formation + Delta-G solvation = 30.014290 kcal Electronic energy + Delta-G solvation = -25941.865599 eV Core-core repulsion = 22147.218302 eV Total energy + Delta-G solvation = -3794.647297 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.58411 -39.52579 -37.63546 -37.26046 -35.77757 -33.85502 -33.24332 -31.06830 -30.35385 -29.35886 -27.66132 -27.06828 -24.37653 -23.36941 -22.59229 -22.37604 -21.07920 -20.53199 -20.00335 -19.30970 -17.61724 -17.39090 -16.71638 -16.10953 -15.81348 -15.57969 -15.40832 -15.24647 -14.77901 -14.28102 -13.83326 -13.70858 -13.39875 -13.15063 -13.05246 -12.70907 -12.27103 -12.21670 -12.04132 -11.99797 -11.72797 -11.65095 -11.22735 -11.18063 -10.98547 -10.94182 -10.81947 -10.55507 -10.42774 -10.07661 -10.00755 -9.66534 -9.46803 -9.35930 -9.22507 -8.79111 -7.55928 -7.44699 -6.87245 -4.46565 1.35998 1.90912 2.10456 2.50504 2.97357 3.00499 3.02992 3.07550 3.33040 3.51945 3.85239 3.86918 4.12563 4.37783 4.54656 4.67032 4.82752 4.83314 4.91702 5.03032 5.09234 5.37814 5.39373 5.52929 5.56713 5.66943 5.71556 5.73898 5.78401 6.01832 6.10762 6.13781 6.27170 6.29996 6.33077 6.61952 6.87195 6.97206 6.98845 7.19153 7.27037 7.41551 7.52151 7.75041 7.96124 8.02296 8.19491 8.27384 8.54212 8.78686 8.86992 10.06532 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.002385 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.468082 B =11739.199515 C =12611.275593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.363 5.363 3 C 0.131 3.869 4 C -0.272 4.272 5 C 0.537 3.463 6 O -0.523 6.523 7 O -0.351 6.351 8 C 0.138 3.862 9 C -0.233 4.233 10 C -0.076 4.076 11 C -0.171 4.171 12 C 0.118 3.882 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.786 5.786 17 Si 0.909 3.091 18 H -0.259 1.259 19 H -0.271 1.271 20 H -0.274 1.274 21 C -0.230 4.230 22 C -0.064 4.064 23 C 0.166 3.834 24 C -0.084 4.084 25 C -0.168 4.168 26 C -0.159 4.159 27 N -0.303 5.303 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.196 0.804 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.282 0.718 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.139 0.861 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.807 -16.072 1.831 16.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.141 5.141 3 C -0.020 4.020 4 C -0.285 4.285 5 C 0.382 3.618 6 O -0.414 6.414 7 O -0.267 6.267 8 C 0.066 3.934 9 C -0.234 4.234 10 C -0.094 4.094 11 C -0.190 4.190 12 C 0.115 3.885 13 C -0.485 4.485 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.411 5.411 17 Si 0.733 3.267 18 H -0.183 1.183 19 H -0.196 1.196 20 H -0.199 1.199 21 C -0.250 4.250 22 C -0.082 4.082 23 C -0.001 4.001 24 C -0.104 4.104 25 C -0.205 4.205 26 C -0.197 4.197 27 N -0.124 5.124 28 H 0.099 0.901 29 H 0.111 0.889 30 H 0.113 0.887 31 H 0.213 0.787 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.157 0.843 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -5.621 -17.140 1.613 18.110 hybrid contribution 0.322 1.691 -0.211 1.734 sum -5.299 -15.449 1.403 16.392 Atomic orbital electron populations 1.22023 0.73218 1.05068 1.04048 1.48292 1.07211 1.03806 1.54764 1.23407 0.90126 0.94153 0.94336 1.19413 0.91569 0.92461 1.25025 1.19982 0.87615 0.81709 0.72500 1.90745 1.27629 1.75240 1.47805 1.86744 1.39581 1.17135 1.83257 1.21693 0.82652 0.88095 1.00925 1.18705 1.19453 0.91233 0.94054 1.20553 0.98732 0.95018 0.95134 1.21295 1.05475 0.93416 0.98806 1.17687 0.86918 0.92955 0.90952 1.19700 1.32942 0.93979 1.01888 0.90171 1.25968 0.92795 1.00852 0.94773 1.69837 1.22688 1.37846 1.10689 0.86248 0.78854 0.82142 0.79451 1.18294 1.19592 1.19916 1.20966 1.13055 0.93868 0.97098 1.20401 0.98059 0.94541 0.95247 1.21414 0.92124 0.91348 0.95198 1.20539 0.95337 0.89164 1.05311 1.23006 1.03118 0.94797 0.99599 1.22961 1.03013 1.02080 0.91652 1.77089 1.00903 1.07332 1.27052 0.90083 0.88924 0.88716 0.78723 0.92108 0.92049 0.89306 0.86269 0.90739 0.88768 0.89286 0.84306 0.88154 0.88256 0.87997 0.88798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.44 59.85 0.68 1.29 16 2 N -0.36 -4.08 3.98 -67.58 -0.27 -4.35 16 3 C 0.13 1.64 11.33 -16.55 -0.19 1.45 16 4 C -0.27 -4.16 6.13 -105.08 -0.64 -4.80 16 5 C 0.54 9.48 7.95 34.41 0.27 9.75 16 6 O -0.52 -9.92 14.79 -19.28 -0.29 -10.20 16 7 O -0.35 -6.61 10.03 -40.65 -0.41 -7.02 16 8 C 0.14 2.66 5.59 36.01 0.20 2.87 16 9 C -0.23 -5.11 5.54 -104.33 -0.58 -5.69 16 10 C -0.08 -1.75 9.67 -39.66 -0.38 -2.13 16 11 C -0.17 -4.33 8.70 -38.87 -0.34 -4.67 16 12 C 0.12 3.05 5.57 -106.82 -0.60 2.46 16 13 C -0.46 -11.72 9.05 -37.74 -0.34 -12.06 16 14 H 0.08 1.98 7.91 -52.49 -0.42 1.56 16 15 C 0.07 1.81 5.14 -17.34 -0.09 1.73 16 16 N -0.79 -19.62 10.95 55.55 0.61 -19.01 16 17 Si 0.91 17.98 29.60 -169.99 -5.03 12.95 16 18 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 19 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 20 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 21 C -0.23 -5.53 9.80 -38.87 -0.38 -5.91 16 22 C -0.06 -1.42 9.67 -39.66 -0.38 -1.80 16 23 C 0.17 2.39 6.80 -82.01 -0.56 1.83 16 24 C -0.08 -1.07 5.65 -91.77 -0.52 -1.59 16 25 C -0.17 -1.69 10.14 -26.73 -0.27 -1.96 16 26 C -0.16 -1.67 10.23 -26.73 -0.27 -1.94 16 27 N -0.30 -4.07 12.08 33.90 0.41 -3.66 16 28 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.20 2.00 8.06 -52.49 -0.42 1.58 16 32 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 33 H 0.06 1.14 8.07 -51.93 -0.42 0.72 16 34 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 35 H 0.12 3.11 6.16 -52.49 -0.32 2.79 16 36 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 37 H 0.09 2.12 8.06 -52.49 -0.42 1.69 16 38 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 39 H 0.14 1.92 6.74 -51.93 -0.35 1.57 16 40 H 0.10 1.04 7.90 -51.93 -0.41 0.62 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 375.38 15.07 5.66 5.66 Total: -1.00 -30.38 375.38 -9.40 -39.78 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -5.70 Total: 7.03 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -4.38 Total: -21.18 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.75 Total: -27.01 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: -0.69 Total: -17.23 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.38 -9.40 -39.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291392732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.798 kcal (2) G-P(sol) polarization free energy of solvation -30.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.399 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.784 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds