Wall clock time and date at job start Tue Mar 31 2020 14:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34226 * 125.74056 * 2 1 4 4 C 1.38127 * 107.40295 * 179.97438 * 3 2 1 5 5 C 1.47291 * 126.42500 * 180.02562 * 4 3 2 6 6 O 1.21515 * 120.00277 * 179.97438 * 5 4 3 7 7 O 1.34756 * 119.99813 * 359.96877 * 5 4 3 8 8 C 1.45202 * 116.99713 * 179.97438 * 7 5 4 9 9 C 1.50701 * 109.46931 * 180.02562 * 8 7 5 10 10 C 1.38641 * 119.74747 * 269.72981 * 9 8 7 11 11 C 1.37619 * 120.24387 * 179.72157 * 10 9 8 12 12 C 1.40713 * 119.74663 * 0.57057 * 11 10 9 13 13 C 1.41399 * 120.24563 * 179.68428 * 12 11 10 14 14 H 1.07997 * 119.99939 * 204.40585 * 13 12 11 15 15 C 1.39949 * 119.99924 * 24.39599 * 13 12 11 16 16 N 1.30829 * 119.99727 * 17.86634 * 15 13 12 17 17 Si 1.86797 * 120.00055 * 197.85843 * 15 13 12 18 18 H 1.48497 * 109.47124 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46958 * 120.00394 * 17 15 13 20 20 H 1.48497 * 109.47120 * 240.00394 * 17 15 13 21 21 C 1.40715 * 119.51357 * 359.70159 * 12 11 10 22 22 C 1.37623 * 119.74461 * 0.02562 * 21 12 11 23 23 C 1.41341 * 107.14774 * 0.02562 * 4 3 2 24 24 C 1.50702 * 125.98963 * 179.73874 * 23 4 3 25 25 C 1.53003 * 117.49648 * 188.61668 * 24 23 4 26 26 C 1.52997 * 59.99996 * 252.51148 * 25 24 23 27 27 N 1.30432 * 108.01485 * 359.97438 * 23 4 3 28 28 H 1.09006 * 109.47065 * 90.00100 * 1 2 3 29 29 H 1.08994 * 109.46771 * 209.99931 * 1 2 3 30 30 H 1.08994 * 109.46931 * 330.00371 * 1 2 3 31 31 H 1.07998 * 126.29676 * 359.95730 * 3 2 1 32 32 H 1.08999 * 109.47150 * 300.00335 * 8 7 5 33 33 H 1.09000 * 109.47027 * 60.01065 * 8 7 5 34 34 H 1.08002 * 119.87506 * 359.97438 * 10 9 8 35 35 H 1.08002 * 120.12485 * 180.28306 * 11 10 9 36 36 H 0.96997 * 119.99673 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.12615 * 179.97438 * 21 12 11 38 38 H 1.07997 * 119.87733 * 179.97438 * 22 21 12 39 39 H 1.08999 * 115.55056 * 334.32568 * 24 23 4 40 40 H 1.09003 * 117.49807 * 0.02562 * 25 24 23 41 41 H 1.09001 * 117.49764 * 145.01773 * 25 24 23 42 42 H 1.08999 * 117.50106 * 252.50743 * 26 25 24 43 43 H 1.09001 * 117.51911 * 107.48454 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2491 1.0895 0.0000 4 6 3.5602 0.6549 0.0006 5 6 4.7632 1.5047 0.0013 6 8 5.8667 0.9958 0.0023 7 8 4.6402 2.8467 0.0009 8 6 5.8684 3.6212 0.0022 9 6 5.5354 5.0909 0.0021 10 6 5.3901 5.7633 -1.2017 11 6 5.0804 7.1041 -1.2138 12 6 4.9231 7.7953 0.0018 13 6 4.6115 9.1745 0.0017 14 1 4.8686 9.7863 0.8537 15 6 3.9700 9.7469 -1.1027 16 7 3.3504 8.9846 -1.9667 17 14 3.9984 11.5991 -1.3428 18 1 4.7598 12.2303 -0.2350 19 1 4.6512 11.9204 -2.6375 20 1 2.6075 12.1191 -1.3472 21 6 5.0784 7.1039 1.2175 22 6 5.3826 5.7618 1.2057 23 6 3.5309 -0.7582 0.0003 24 6 4.7316 -1.6689 -0.0048 25 6 4.4827 -3.1649 -0.2075 26 6 4.8891 -2.6367 1.1697 27 7 2.2824 -1.1357 0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.9160 2.1168 -0.0006 32 1 6.4487 3.3805 0.8930 33 1 6.4508 3.3803 -0.8871 34 1 5.5165 5.2318 -2.1333 35 1 4.9632 7.6249 -2.1526 36 1 2.9061 9.3813 -2.7323 37 1 4.9603 7.6248 2.1562 38 1 5.5027 5.2292 2.1375 39 1 5.6400 -1.2467 -0.4344 40 1 3.4505 -3.4903 -0.3376 41 1 5.2274 -3.7272 -0.7708 42 1 5.9012 -2.8516 1.5126 43 1 4.1246 -2.6145 1.9463 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291392732.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:05:04 Heat of formation + Delta-G solvation = 16.046882 kcal Electronic energy + Delta-G solvation = -25942.471271 eV Core-core repulsion = 22147.218302 eV Total energy + Delta-G solvation = -3795.252969 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.58457 -40.93380 -39.41389 -38.15516 -37.23870 -35.65546 -34.07688 -32.66586 -31.60818 -31.19983 -28.96772 -28.24369 -25.88875 -24.65219 -23.51697 -23.24740 -22.92765 -21.91601 -21.58763 -20.30207 -19.25679 -18.76847 -18.01036 -17.42748 -17.16206 -16.89970 -16.50115 -16.31958 -15.86143 -15.65707 -15.53409 -15.38010 -14.52986 -14.29527 -13.99571 -13.88215 -13.79485 -13.60202 -13.55272 -13.49580 -12.95841 -12.83329 -12.67292 -12.58396 -12.42740 -12.16681 -12.08252 -11.80886 -11.70877 -11.59406 -11.46159 -11.27113 -11.13154 -11.01963 -10.30687 -9.79969 -9.42058 -9.31456 -8.67835 -6.38168 0.29881 0.74839 0.84819 1.12944 1.29835 1.39613 1.45971 1.54831 2.04900 2.09642 2.20567 2.74647 2.98456 3.22667 3.47517 3.71804 3.90479 3.95528 4.10964 4.14761 4.16151 4.16262 4.29199 4.38454 4.42307 4.50791 4.56688 4.58075 4.67422 4.69850 4.74631 4.92523 5.02546 5.13482 5.15288 5.24108 5.28247 5.32618 5.41264 5.58476 5.66932 5.77722 5.90750 6.07304 6.17265 6.33504 6.41940 6.66046 6.89393 6.90137 6.98865 8.28872 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.020046 B = 0.002385 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.468082 B =11739.199515 C =12611.275593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.354 5.354 3 C 0.144 3.856 4 C -0.309 4.309 5 C 0.538 3.462 6 O -0.543 6.543 7 O -0.358 6.358 8 C 0.143 3.857 9 C -0.226 4.226 10 C -0.080 4.080 11 C -0.193 4.193 12 C 0.088 3.912 13 C -0.492 4.492 14 H 0.079 0.921 15 C 0.035 3.965 16 N -0.817 5.817 17 Si 0.983 3.017 18 H -0.258 1.258 19 H -0.265 1.265 20 H -0.265 1.265 21 C -0.244 4.244 22 C -0.064 4.064 23 C 0.158 3.842 24 C -0.112 4.112 25 C -0.149 4.149 26 C -0.151 4.151 27 N -0.314 5.314 28 H 0.096 0.904 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.217 0.783 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.290 0.710 37 H 0.102 0.898 38 H 0.117 0.883 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.118 0.882 42 H 0.116 0.884 43 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 -16.914 2.146 18.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.130 5.130 3 C -0.010 4.010 4 C -0.322 4.322 5 C 0.385 3.615 6 O -0.435 6.435 7 O -0.275 6.275 8 C 0.071 3.929 9 C -0.228 4.228 10 C -0.098 4.098 11 C -0.212 4.212 12 C 0.085 3.915 13 C -0.521 4.521 14 H 0.097 0.903 15 C -0.181 4.181 16 N -0.442 5.442 17 Si 0.804 3.196 18 H -0.181 1.181 19 H -0.189 1.189 20 H -0.189 1.189 21 C -0.264 4.264 22 C -0.082 4.082 23 C -0.008 4.008 24 C -0.132 4.132 25 C -0.186 4.186 26 C -0.189 4.189 27 N -0.136 5.136 28 H 0.115 0.885 29 H 0.122 0.878 30 H 0.138 0.862 31 H 0.233 0.767 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.101 0.899 37 H 0.121 0.879 38 H 0.135 0.865 39 H 0.140 0.860 40 H 0.117 0.883 41 H 0.137 0.863 42 H 0.134 0.866 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.718 -18.020 1.935 19.329 hybrid contribution 0.577 1.778 -0.290 1.891 sum -6.141 -16.243 1.645 17.443 Atomic orbital electron populations 1.22491 0.70242 1.06941 1.05678 1.48731 1.08740 1.02877 1.52693 1.23678 0.89409 0.95248 0.92649 1.19446 0.91768 0.92752 1.28189 1.20321 0.88309 0.81106 0.71806 1.90726 1.28568 1.75251 1.48985 1.86698 1.39002 1.18033 1.83725 1.21545 0.82984 0.86569 1.01817 1.18970 1.17551 0.92731 0.93510 1.20768 0.98112 0.94395 0.96524 1.21258 1.07331 0.94449 0.98199 1.18036 0.87849 0.93732 0.91863 1.19937 1.34653 0.94397 1.03079 0.90296 1.26804 0.91748 1.05573 0.93944 1.69877 1.23128 1.39959 1.11284 0.85142 0.79154 0.75970 0.79373 1.18128 1.18914 1.18928 1.21169 1.13482 0.94810 0.96901 1.20699 0.96945 0.93999 0.96590 1.21636 0.92860 0.91259 0.95073 1.20537 0.94596 0.90426 1.07639 1.23064 1.03600 0.92702 0.99260 1.23034 1.03787 1.00583 0.91479 1.77049 1.00720 1.08350 1.27441 0.88516 0.87839 0.86160 0.76676 0.90995 0.91507 0.87701 0.87800 0.89910 0.87947 0.86518 0.85970 0.88289 0.86328 0.86586 0.89028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.80 11.44 127.77 1.46 2.27 16 2 N -0.35 -7.22 3.98 -367.73 -1.46 -8.68 16 3 C 0.14 3.35 11.33 84.30 0.96 4.31 16 4 C -0.31 -9.26 6.13 -20.16 -0.12 -9.38 16 5 C 0.54 18.83 7.95 70.20 0.56 19.38 16 6 O -0.54 -20.65 14.79 19.79 0.29 -20.35 16 7 O -0.36 -13.19 10.03 -56.67 -0.57 -13.75 16 8 C 0.14 5.36 5.59 71.24 0.40 5.76 16 9 C -0.23 -9.76 5.54 -19.67 -0.11 -9.86 16 10 C -0.08 -3.69 9.67 22.22 0.21 -3.48 16 11 C -0.19 -10.05 8.70 22.73 0.20 -9.85 16 12 C 0.09 4.67 5.57 -21.29 -0.12 4.55 16 13 C -0.49 -25.92 9.05 23.46 0.21 -25.71 16 14 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 15 C 0.04 1.73 5.14 85.26 0.44 2.17 16 16 N -0.82 -41.55 10.95 21.83 0.24 -41.31 16 17 Si 0.98 36.96 29.60 68.60 2.03 38.99 16 18 H -0.26 -9.51 7.11 99.48 0.71 -8.81 16 19 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 C -0.24 -11.80 9.80 22.73 0.22 -11.57 16 22 C -0.06 -2.79 9.67 22.22 0.21 -2.58 16 23 C 0.16 4.47 6.80 43.53 0.30 4.76 16 24 C -0.11 -2.82 5.65 -11.54 -0.07 -2.89 16 25 C -0.15 -2.79 10.14 30.59 0.31 -2.48 16 26 C -0.15 -2.99 10.23 30.59 0.31 -2.68 16 27 N -0.31 -8.02 12.08 -46.65 -0.56 -8.59 16 28 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 29 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.12 0.56 8.14 -2.39 -0.02 0.55 16 31 H 0.22 3.96 8.06 -2.91 -0.02 3.93 16 32 H 0.07 2.53 8.08 -2.39 -0.02 2.51 16 33 H 0.07 2.42 8.07 -2.39 -0.02 2.40 16 34 H 0.10 4.41 8.06 -2.91 -0.02 4.39 16 35 H 0.10 5.64 6.16 -2.91 -0.02 5.62 16 36 H 0.29 13.21 8.30 -92.71 -0.77 12.44 16 37 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.12 4.37 8.06 -2.91 -0.02 4.34 16 39 H 0.12 3.46 6.74 -2.39 -0.02 3.44 16 40 H 0.10 1.89 7.90 -2.39 -0.02 1.87 16 41 H 0.12 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.12 1.93 8.14 -2.39 -0.02 1.91 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -66.82 375.38 6.37 -60.45 By element: Atomic # 1 Polarization: 29.50 SS G_CDS: 1.03 Total: 30.52 kcal Atomic # 6 Polarization: -42.66 SS G_CDS: 5.38 Total: -37.28 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -1.79 Total: -58.58 kcal Atomic # 8 Polarization: -33.83 SS G_CDS: -0.28 Total: -34.11 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 2.03 Total: 38.99 kcal Total: -66.82 6.37 -60.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291392732.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.496 kcal (2) G-P(sol) polarization free energy of solvation -66.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds