Wall clock time and date at job start Tue Mar 31 2020 15:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47506 * 353.85782 * 3 2 1 5 5 N 1.46492 * 109.47540 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99800 * 269.99581 * 5 4 3 7 7 C 1.50699 * 109.47352 * 269.99857 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00215 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46988 * 90.00142 * 11 9 7 13 13 H 1.48502 * 109.47218 * 209.99962 * 11 9 7 14 14 H 1.48501 * 109.47118 * 330.00116 * 11 9 7 15 15 C 1.34773 * 120.00231 * 90.00038 * 5 4 3 16 16 O 1.21283 * 120.00360 * 179.72577 * 15 5 4 17 17 C 1.50706 * 120.00081 * 359.97438 * 15 5 4 18 18 C 1.52998 * 109.47348 * 179.72561 * 17 15 5 19 19 N 1.46496 * 109.47238 * 179.97438 * 18 17 15 20 20 C 1.36037 * 126.35209 * 264.69452 * 19 18 17 21 21 N 1.30107 * 110.09870 * 179.87618 * 20 19 18 22 22 C 1.35785 * 109.64661 * 0.38832 * 21 20 19 23 23 C 1.39733 * 133.60304 * 179.76197 * 22 21 20 24 24 C 1.36602 * 119.88555 * 179.97438 * 23 22 21 25 25 C 1.38778 * 120.67281 * 359.97438 * 24 23 22 26 26 C 1.37854 * 120.44484 * 0.04331 * 25 24 23 27 27 C 1.38052 * 126.34555 * 84.99994 * 19 18 17 28 28 H 1.08994 * 109.47506 * 233.85601 * 3 2 1 29 29 H 1.09001 * 109.47264 * 113.85205 * 3 2 1 30 30 H 1.08999 * 109.47326 * 59.99276 * 4 3 2 31 31 H 1.09006 * 109.46825 * 300.00118 * 4 3 2 32 32 H 1.08995 * 109.47161 * 30.00561 * 6 5 4 33 33 H 1.09002 * 109.46900 * 149.99872 * 6 5 4 34 34 H 0.97007 * 120.00044 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46564 * 299.73030 * 17 15 5 36 36 H 1.08998 * 109.47012 * 59.72084 * 17 15 5 37 37 H 1.09000 * 109.46986 * 300.00089 * 18 17 15 38 38 H 1.09002 * 109.46857 * 60.00224 * 18 17 15 39 39 H 1.08005 * 124.94789 * 0.02562 * 20 19 18 40 40 H 1.08004 * 120.05853 * 359.97438 * 23 22 21 41 41 H 1.08004 * 119.66881 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.77940 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.15355 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.4333 0.1543 5 7 4.5836 -1.4326 0.1550 6 6 5.3166 -1.5679 -1.1063 7 6 5.5687 -3.0269 -1.3868 8 1 5.2175 -3.7783 -0.6951 9 6 6.2466 -3.4026 -2.5270 10 7 6.6737 -2.4876 -3.3696 11 14 6.5584 -5.2112 -2.8752 12 1 5.4286 -5.7655 -3.6636 13 1 7.8188 -5.3567 -3.6469 14 1 6.6756 -5.9493 -1.5919 15 6 5.2569 -1.3076 1.3157 16 8 6.4697 -1.3120 1.3168 17 6 4.5029 -1.1679 2.6130 18 6 5.4965 -1.0502 3.7704 19 7 4.7635 -0.9138 5.0315 20 6 4.4526 0.2511 5.6615 21 7 3.7946 0.0053 6.7566 22 6 3.6457 -1.3358 6.9085 23 6 3.0399 -2.1340 7.8824 24 6 3.0540 -3.4938 7.7533 25 6 3.6649 -4.0950 6.6618 26 6 4.2691 -3.3275 5.6891 27 6 4.2653 -1.9440 5.8037 28 1 2.9710 0.6069 0.8298 29 1 2.9711 0.4164 -0.9399 30 1 2.7555 -2.0397 -0.6755 31 1 2.7555 -1.8491 1.0942 32 1 4.7278 -1.1385 -1.9167 33 1 6.2688 -1.0426 -1.0312 34 1 7.1504 -2.7519 -4.1721 35 1 3.8798 -0.2743 2.5766 36 1 3.8725 -2.0444 2.7630 37 1 6.1196 -1.9438 3.8067 38 1 6.1268 -0.1736 3.6204 39 1 4.7119 1.2365 5.3034 40 1 2.5612 -1.6766 8.7357 41 1 2.5843 -4.1074 8.5079 42 1 3.6672 -5.1714 6.5740 43 1 4.7435 -3.8003 4.8419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299377935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:04 Heat of formation + Delta-G solvation = 63.557976 kcal Electronic energy + Delta-G solvation = -26543.963226 eV Core-core repulsion = 22783.063243 eV Total energy + Delta-G solvation = -3760.899983 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.25646 -39.55037 -37.47712 -36.97279 -35.50284 -34.85824 -33.00929 -31.44627 -30.96330 -29.84720 -29.43365 -27.45138 -24.87991 -24.10966 -23.37837 -22.59068 -22.07586 -20.54875 -18.72334 -17.79070 -17.44494 -17.33889 -16.58582 -16.16176 -15.98287 -15.91940 -15.38392 -15.18254 -14.80809 -14.32076 -14.15057 -14.14933 -13.82716 -13.66013 -13.35452 -12.96508 -12.78237 -12.53375 -12.38974 -12.25468 -12.12491 -11.88231 -11.74212 -11.59652 -11.46646 -11.36415 -11.07277 -10.93283 -10.72249 -10.51596 -10.28951 -10.06047 -9.82392 -9.27432 -8.56423 -8.49276 -8.22835 -8.01864 -6.18186 -4.23411 0.84021 1.39845 2.43529 2.65069 2.68396 2.74725 3.06194 3.22178 3.29889 3.32737 3.52152 3.76926 4.07002 4.15217 4.33165 4.43236 4.54550 4.64240 4.81239 4.87671 4.90670 4.98370 5.01978 5.17457 5.18333 5.26874 5.29569 5.32440 5.37123 5.52389 5.61843 5.68206 5.72687 5.96464 6.03319 6.31677 6.38834 6.41220 6.73638 6.77464 6.99609 7.21019 7.28276 7.50779 7.74246 7.76960 8.05444 8.07563 8.64715 8.82903 9.42660 10.89952 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010839 B = 0.003280 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.741535 B = 8533.558421 C = 9679.812074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C 0.215 3.785 3 C -0.049 4.049 4 C 0.116 3.884 5 N -0.593 5.593 6 C 0.245 3.755 7 C -0.532 4.532 8 H 0.058 0.942 9 C 0.064 3.936 10 N -0.893 5.893 11 Si 0.897 3.103 12 H -0.280 1.280 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.513 3.487 16 O -0.533 6.533 17 C -0.162 4.162 18 C 0.126 3.874 19 N -0.489 5.489 20 C 0.262 3.738 21 N -0.502 5.502 22 C 0.042 3.958 23 C -0.068 4.068 24 C -0.130 4.130 25 C -0.105 4.105 26 C -0.107 4.107 27 C 0.048 3.952 28 H 0.105 0.895 29 H 0.118 0.882 30 H 0.096 0.904 31 H 0.075 0.925 32 H 0.036 0.964 33 H 0.048 0.952 34 H 0.265 0.735 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.106 0.894 39 H 0.213 0.787 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.513 2.923 16.263 17.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.119 5.119 2 C -0.103 4.103 3 C -0.091 4.091 4 C -0.010 4.010 5 N -0.324 5.324 6 C 0.126 3.874 7 C -0.570 4.570 8 H 0.076 0.924 9 C -0.139 4.139 10 N -0.531 5.531 11 Si 0.725 3.275 12 H -0.206 1.206 13 H -0.210 1.210 14 H -0.199 1.199 15 C 0.298 3.702 16 O -0.410 6.410 17 C -0.203 4.203 18 C 0.004 3.996 19 N -0.178 5.178 20 C -0.024 4.024 21 N -0.220 5.220 22 C -0.076 4.076 23 C -0.087 4.087 24 C -0.151 4.151 25 C -0.125 4.125 26 C -0.127 4.127 27 C -0.061 4.061 28 H 0.123 0.877 29 H 0.136 0.864 30 H 0.114 0.886 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.114 0.886 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.230 0.770 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.147 0.853 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -6.677 3.534 16.505 18.151 hybrid contribution 0.876 -1.497 -1.088 2.048 sum -5.801 2.036 15.417 16.598 Atomic orbital electron populations 1.81221 1.13028 1.08457 1.09198 1.29067 0.95087 0.93253 0.92942 1.19867 0.81461 1.01299 1.06438 1.21335 0.82043 0.93556 1.04107 1.48213 1.04964 1.70221 1.08972 1.19389 0.92590 0.97539 0.77890 1.21383 1.36973 0.92056 1.06610 0.92379 1.24912 0.95203 0.97860 0.95933 1.69913 1.38106 1.32963 1.12121 0.86511 0.77791 0.84853 0.78374 1.20589 1.21037 1.19876 1.19991 0.87934 0.77622 0.84632 1.90723 1.13592 1.50133 1.86588 1.22130 0.99682 1.04852 0.93663 1.21607 0.93007 1.06227 0.78752 1.45601 1.46292 1.05736 1.20160 1.25383 0.95717 0.91665 0.89624 1.70462 1.19689 1.14247 1.17642 1.19085 1.02612 0.89842 0.96038 1.19993 0.98742 0.92546 0.97441 1.20635 1.01481 0.94119 0.98826 1.20899 0.98050 0.99668 0.93858 1.20065 1.02530 0.89389 1.00752 1.18936 1.01970 0.90897 0.94292 0.87694 0.86390 0.88575 0.90664 0.94610 0.93444 0.92572 0.88705 0.88615 0.88215 0.87531 0.77045 0.85626 0.85558 0.85349 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -6.41 18.54 42.15 0.78 -5.62 16 2 C 0.21 2.50 15.43 -20.76 -0.32 2.18 16 3 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 4 C 0.12 1.41 5.17 -4.05 -0.02 1.39 16 5 N -0.59 -9.81 2.46 -175.06 -0.43 -10.24 16 6 C 0.24 5.43 5.16 -5.19 -0.03 5.41 16 7 C -0.53 -13.56 9.39 -34.44 -0.32 -13.88 16 8 H 0.06 1.48 7.81 -52.49 -0.41 1.07 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 10 N -0.89 -24.66 13.29 55.43 0.74 -23.92 16 11 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 14 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.51 8.16 7.67 -10.98 -0.08 8.08 16 16 O -0.53 -10.84 15.56 5.56 0.09 -10.75 16 17 C -0.16 -1.75 4.58 -27.88 -0.13 -1.88 16 18 C 0.13 1.32 5.45 -4.04 -0.02 1.30 16 19 N -0.49 -5.31 2.80 -115.80 -0.32 -5.64 16 20 C 0.26 2.70 12.49 -89.79 -1.12 1.58 16 21 N -0.50 -6.56 11.27 -12.05 -0.14 -6.70 16 22 C 0.04 0.56 7.23 -84.70 -0.61 -0.06 16 23 C -0.07 -0.75 10.05 -39.61 -0.40 -1.15 16 24 C -0.13 -1.22 9.96 -39.97 -0.40 -1.62 16 25 C -0.11 -1.01 10.03 -39.52 -0.40 -1.41 16 26 C -0.11 -1.18 10.05 -39.50 -0.40 -1.58 16 27 C 0.05 0.59 6.87 -83.99 -0.58 0.02 16 28 H 0.11 0.77 7.23 -51.93 -0.38 0.39 16 29 H 0.12 1.11 8.14 -51.93 -0.42 0.68 16 30 H 0.10 1.28 8.07 -51.93 -0.42 0.86 16 31 H 0.08 0.77 6.43 -51.93 -0.33 0.44 16 32 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 33 H 0.05 1.21 7.43 -51.93 -0.39 0.82 16 34 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 35 H 0.09 0.80 7.20 -51.93 -0.37 0.43 16 36 H 0.10 1.01 7.39 -51.93 -0.38 0.63 16 37 H 0.10 1.16 8.10 -51.93 -0.42 0.74 16 38 H 0.11 1.01 8.09 -51.93 -0.42 0.59 16 39 H 0.21 1.28 8.06 -52.48 -0.42 0.86 16 40 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 41 H 0.13 0.85 8.06 -52.48 -0.42 0.42 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 378.36 15.07 5.70 5.70 Total: -1.00 -33.80 378.36 -9.32 -43.12 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -5.61 Total: -0.81 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -5.10 Total: -0.68 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: 0.63 Total: -52.12 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.80 -9.32 -43.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299377935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.677 kcal (2) G-P(sol) polarization free energy of solvation -33.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds