Wall clock time and date at job start Tue Mar 31 2020 15:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47506 * 353.85782 * 3 2 1 5 5 N 1.46492 * 109.47540 * 180.02562 * 4 3 2 6 6 C 1.46506 * 119.99800 * 269.99581 * 5 4 3 7 7 C 1.50699 * 109.47352 * 269.99857 * 6 5 4 8 8 H 1.08000 * 119.99828 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00146 * 179.97438 * 7 6 5 10 10 N 1.31516 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 120.00215 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46988 * 90.00142 * 11 9 7 13 13 H 1.48502 * 109.47218 * 209.99962 * 11 9 7 14 14 H 1.48501 * 109.47118 * 330.00116 * 11 9 7 15 15 C 1.34773 * 120.00231 * 90.00038 * 5 4 3 16 16 O 1.21283 * 120.00360 * 179.72577 * 15 5 4 17 17 C 1.50706 * 120.00081 * 359.97438 * 15 5 4 18 18 C 1.52998 * 109.47348 * 179.72561 * 17 15 5 19 19 N 1.46496 * 109.47238 * 179.97438 * 18 17 15 20 20 C 1.36037 * 126.35209 * 264.69452 * 19 18 17 21 21 N 1.30107 * 110.09870 * 179.87618 * 20 19 18 22 22 C 1.35785 * 109.64661 * 0.38832 * 21 20 19 23 23 C 1.39733 * 133.60304 * 179.76197 * 22 21 20 24 24 C 1.36602 * 119.88555 * 179.97438 * 23 22 21 25 25 C 1.38778 * 120.67281 * 359.97438 * 24 23 22 26 26 C 1.37854 * 120.44484 * 0.04331 * 25 24 23 27 27 C 1.38052 * 126.34555 * 84.99994 * 19 18 17 28 28 H 1.08994 * 109.47506 * 233.85601 * 3 2 1 29 29 H 1.09001 * 109.47264 * 113.85205 * 3 2 1 30 30 H 1.08999 * 109.47326 * 59.99276 * 4 3 2 31 31 H 1.09006 * 109.46825 * 300.00118 * 4 3 2 32 32 H 1.08995 * 109.47161 * 30.00561 * 6 5 4 33 33 H 1.09002 * 109.46900 * 149.99872 * 6 5 4 34 34 H 0.97007 * 120.00044 * 180.02562 * 10 9 7 35 35 H 1.09001 * 109.46564 * 299.73030 * 17 15 5 36 36 H 1.08998 * 109.47012 * 59.72084 * 17 15 5 37 37 H 1.09000 * 109.46986 * 300.00089 * 18 17 15 38 38 H 1.09002 * 109.46857 * 60.00224 * 18 17 15 39 39 H 1.08005 * 124.94789 * 0.02562 * 20 19 18 40 40 H 1.08004 * 120.05853 * 359.97438 * 23 22 21 41 41 H 1.08004 * 119.66881 * 180.02562 * 24 23 22 42 42 H 1.07994 * 119.77940 * 180.02562 * 25 24 23 43 43 H 1.07998 * 120.15355 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6079 0.0007 0.0000 4 6 3.1187 -1.4333 0.1543 5 7 4.5836 -1.4326 0.1550 6 6 5.3166 -1.5679 -1.1063 7 6 5.5687 -3.0269 -1.3868 8 1 5.2175 -3.7783 -0.6951 9 6 6.2466 -3.4026 -2.5270 10 7 6.6737 -2.4876 -3.3696 11 14 6.5584 -5.2112 -2.8752 12 1 5.4286 -5.7655 -3.6636 13 1 7.8188 -5.3567 -3.6469 14 1 6.6756 -5.9493 -1.5919 15 6 5.2569 -1.3076 1.3157 16 8 6.4697 -1.3120 1.3168 17 6 4.5029 -1.1679 2.6130 18 6 5.4965 -1.0502 3.7704 19 7 4.7635 -0.9138 5.0315 20 6 4.4526 0.2511 5.6615 21 7 3.7946 0.0053 6.7566 22 6 3.6457 -1.3358 6.9085 23 6 3.0399 -2.1340 7.8824 24 6 3.0540 -3.4938 7.7533 25 6 3.6649 -4.0950 6.6618 26 6 4.2691 -3.3275 5.6891 27 6 4.2653 -1.9440 5.8037 28 1 2.9710 0.6069 0.8298 29 1 2.9711 0.4164 -0.9399 30 1 2.7555 -2.0397 -0.6755 31 1 2.7555 -1.8491 1.0942 32 1 4.7278 -1.1385 -1.9167 33 1 6.2688 -1.0426 -1.0312 34 1 7.1504 -2.7519 -4.1721 35 1 3.8798 -0.2743 2.5766 36 1 3.8725 -2.0444 2.7630 37 1 6.1196 -1.9438 3.8067 38 1 6.1268 -0.1736 3.6204 39 1 4.7119 1.2365 5.3034 40 1 2.5612 -1.6766 8.7357 41 1 2.5843 -4.1074 8.5079 42 1 3.6672 -5.1714 6.5740 43 1 4.7435 -3.8003 4.8419 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299377935.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:03 Heat of formation + Delta-G solvation = 45.509896 kcal Electronic energy + Delta-G solvation = -26544.745849 eV Core-core repulsion = 22783.063243 eV Total energy + Delta-G solvation = -3761.682606 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.06014 -40.83644 -38.25462 -38.02183 -36.77228 -35.79649 -34.84477 -32.43507 -32.10167 -30.75882 -30.21202 -29.05682 -26.05164 -25.33380 -24.15351 -23.98378 -22.91985 -21.37367 -19.96379 -18.87799 -18.42865 -18.33357 -18.12366 -17.29280 -17.13583 -16.66299 -16.47957 -16.42248 -15.96496 -15.65186 -15.14284 -15.01574 -14.70287 -14.52722 -14.44544 -14.31315 -13.86983 -13.74634 -13.56554 -13.54098 -13.14157 -12.96081 -12.86492 -12.73273 -12.57960 -12.46970 -12.40531 -12.31532 -12.16906 -11.83044 -11.67153 -11.37057 -10.90024 -10.63581 -10.58085 -9.50375 -9.29202 -9.04070 -8.18271 -6.30099 0.06230 0.60268 1.40126 1.42435 1.50915 1.58376 1.66128 1.82542 1.85166 1.89610 2.31589 2.45721 2.96285 3.10446 3.15132 3.40263 3.64546 3.72495 3.73129 3.87407 4.03703 4.10124 4.15858 4.25142 4.35357 4.42819 4.54280 4.54602 4.58830 4.77874 4.81191 4.83660 4.90697 5.04730 5.12158 5.28078 5.34806 5.51712 5.59700 5.62739 5.62750 5.85973 5.99649 6.12648 6.23204 6.58931 6.70489 6.81243 6.93428 7.32474 7.47297 8.88314 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.010839 B = 0.003280 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2582.741535 B = 8533.558421 C = 9679.812074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.491 5.491 2 C 0.244 3.756 3 C -0.038 4.038 4 C 0.113 3.887 5 N -0.595 5.595 6 C 0.260 3.740 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.013 3.987 10 N -0.925 5.925 11 Si 0.955 3.045 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.273 1.273 15 C 0.511 3.489 16 O -0.583 6.583 17 C -0.144 4.144 18 C 0.133 3.867 19 N -0.487 5.487 20 C 0.268 3.732 21 N -0.535 5.535 22 C 0.015 3.985 23 C -0.085 4.085 24 C -0.125 4.125 25 C -0.105 4.105 26 C -0.122 4.122 27 C 0.029 3.971 28 H 0.139 0.861 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.102 0.898 32 H 0.034 0.966 33 H 0.009 0.991 34 H 0.265 0.735 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.083 0.917 38 H 0.119 0.881 39 H 0.251 0.749 40 H 0.134 0.866 41 H 0.155 0.845 42 H 0.153 0.847 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.525 2.559 17.479 18.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.169 5.169 2 C -0.074 4.074 3 C -0.079 4.079 4 C -0.011 4.011 5 N -0.325 5.325 6 C 0.139 3.861 7 C -0.579 4.579 8 H 0.072 0.928 9 C -0.187 4.187 10 N -0.565 5.565 11 Si 0.780 3.220 12 H -0.195 1.195 13 H -0.211 1.211 14 H -0.198 1.198 15 C 0.300 3.700 16 O -0.463 6.463 17 C -0.185 4.185 18 C 0.011 3.989 19 N -0.177 5.177 20 C -0.017 4.017 21 N -0.255 5.255 22 C -0.103 4.103 23 C -0.105 4.105 24 C -0.145 4.145 25 C -0.124 4.124 26 C -0.143 4.143 27 C -0.080 4.080 28 H 0.157 0.843 29 H 0.141 0.859 30 H 0.101 0.899 31 H 0.120 0.880 32 H 0.052 0.948 33 H 0.027 0.973 34 H 0.074 0.926 35 H 0.148 0.852 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.137 0.863 39 H 0.267 0.733 40 H 0.152 0.848 41 H 0.173 0.827 42 H 0.171 0.829 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -7.738 3.163 17.744 19.614 hybrid contribution 1.208 -1.398 -1.415 2.327 sum -6.530 1.764 16.329 17.674 Atomic orbital electron populations 1.81263 1.14573 1.10011 1.11041 1.29222 0.95062 0.91745 0.91331 1.19852 0.79900 0.99912 1.08187 1.21498 0.79191 0.95351 1.05094 1.48062 1.06642 1.70308 1.07494 1.18823 0.91609 0.95236 0.80478 1.21750 1.36274 0.93656 1.06214 0.92828 1.25684 0.95304 1.01589 0.96095 1.70014 1.39140 1.34687 1.12635 0.85604 0.77774 0.80445 0.78132 1.19488 1.21106 1.19765 1.20788 0.87536 0.75964 0.85747 1.90705 1.16088 1.52161 1.87381 1.22023 0.99321 1.06826 0.90292 1.21505 0.92755 1.06149 0.78534 1.45590 1.46332 1.05714 1.20039 1.26156 0.94141 0.92748 0.88664 1.70445 1.21362 1.14520 1.19166 1.19472 1.03564 0.90254 0.96986 1.20284 0.99186 0.93351 0.97664 1.20984 1.00574 0.93773 0.99167 1.21266 0.96980 1.00891 0.93288 1.20278 1.03202 0.89266 1.01518 1.19183 1.02568 0.91583 0.94667 0.84326 0.85936 0.89907 0.87999 0.94815 0.97289 0.92595 0.85242 0.87745 0.89836 0.86332 0.73278 0.84834 0.82732 0.82950 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.48 18.54 20.00 0.37 -13.10 16 2 C 0.24 5.09 15.43 89.44 1.38 6.47 16 3 C -0.04 -0.60 6.03 28.79 0.17 -0.43 16 4 C 0.11 2.50 5.17 86.38 0.45 2.95 16 5 N -0.59 -19.07 2.46 -826.15 -2.03 -21.10 16 6 C 0.26 11.69 5.16 85.63 0.44 12.13 16 7 C -0.54 -27.79 9.39 25.60 0.24 -27.55 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.71 16 9 C 0.01 0.67 5.46 84.65 0.46 1.14 16 10 N -0.92 -51.92 13.29 21.44 0.28 -51.64 16 11 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 13 H -0.29 -12.56 7.11 99.48 0.71 -11.86 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.51 15.66 7.67 87.66 0.67 16.34 16 16 O -0.58 -23.83 15.56 -3.04 -0.05 -23.88 16 17 C -0.14 -2.71 4.58 29.85 0.14 -2.57 16 18 C 0.13 2.53 5.45 86.38 0.47 3.00 16 19 N -0.49 -9.68 2.80 -520.27 -1.46 -11.14 16 20 C 0.27 4.94 12.49 180.06 2.25 7.19 16 21 N -0.54 -13.38 11.27 -192.03 -2.16 -15.54 16 22 C 0.01 0.37 7.23 39.45 0.29 0.66 16 23 C -0.09 -1.80 10.05 22.25 0.22 -1.58 16 24 C -0.12 -2.09 9.96 22.02 0.22 -1.87 16 25 C -0.10 -1.80 10.03 22.31 0.22 -1.58 16 26 C -0.12 -2.54 10.05 22.32 0.22 -2.32 16 27 C 0.03 0.68 6.87 38.86 0.27 0.94 16 28 H 0.14 1.38 7.23 -2.39 -0.02 1.36 16 29 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.08 2.09 8.07 -2.39 -0.02 2.07 16 31 H 0.10 1.74 6.43 -2.38 -0.02 1.73 16 32 H 0.03 1.52 8.07 -2.39 -0.02 1.50 16 33 H 0.01 0.47 7.43 -2.39 -0.02 0.46 16 34 H 0.27 14.16 8.31 -92.70 -0.77 13.39 16 35 H 0.13 1.58 7.20 -2.39 -0.02 1.57 16 36 H 0.10 1.88 7.39 -2.39 -0.02 1.86 16 37 H 0.08 1.89 8.10 -2.39 -0.02 1.87 16 38 H 0.12 1.99 8.09 -2.39 -0.02 1.97 16 39 H 0.25 2.17 8.06 -2.91 -0.02 2.15 16 40 H 0.13 2.44 8.06 -2.91 -0.02 2.41 16 41 H 0.16 1.61 8.06 -2.91 -0.02 1.59 16 42 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 43 H 0.13 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -76.27 378.36 6.13 -70.14 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 1.03 Total: 9.09 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 8.12 Total: 12.92 kcal Atomic # 7 Polarization: -107.53 SS G_CDS: -5.00 Total: -112.52 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -76.27 6.13 -70.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299377935.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.649 kcal (2) G-P(sol) polarization free energy of solvation -76.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds