Wall clock time and date at job start Tue Mar 31 2020 14:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37095 * 120.00219 * 2 1 4 4 H 1.08000 * 120.00010 * 201.70895 * 3 2 1 5 5 C 1.38946 * 120.00094 * 21.70434 * 3 2 1 6 6 N 1.31416 * 120.00065 * 11.33800 * 5 3 2 7 7 Si 1.86800 * 120.00149 * 191.34417 * 5 3 2 8 8 H 1.48500 * 109.47068 * 85.07387 * 7 5 3 9 9 H 1.48500 * 109.46839 * 205.06988 * 7 5 3 10 10 H 1.48493 * 109.46902 * 325.06890 * 7 5 3 11 11 C 1.34778 * 119.99911 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00225 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99860 * 0.02562 * 11 2 1 14 14 N 1.46497 * 109.47037 * 180.02562 * 13 11 2 15 15 C 1.34780 * 120.00309 * 179.97438 * 14 13 11 16 16 O 1.21285 * 119.99864 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00295 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.47178 * 179.97438 * 17 15 14 19 19 C 1.36124 * 120.17635 * 264.72618 * 18 17 15 20 20 C 1.39331 * 120.99875 * 180.32747 * 19 18 17 21 21 C 1.36132 * 120.98184 * 359.91976 * 20 19 18 22 22 C 1.40502 * 119.65050 * 0.05096 * 21 20 19 23 23 C 1.40551 * 121.27667 * 180.02562 * 22 21 20 24 24 C 1.36085 * 119.65118 * 179.97438 * 23 22 21 25 25 C 1.39383 * 120.99486 * 0.02562 * 24 23 22 26 26 C 1.36095 * 120.99147 * 359.95952 * 25 24 23 27 27 C 1.40503 * 120.17044 * 85.00145 * 18 17 15 28 28 H 1.08998 * 109.47115 * 272.17603 * 1 2 3 29 29 H 1.09001 * 109.47034 * 32.18080 * 1 2 3 30 30 H 1.09002 * 109.47523 * 152.17954 * 1 2 3 31 31 H 0.96995 * 120.00118 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47382 * 60.00029 * 13 11 2 33 33 H 1.09006 * 109.46900 * 299.99525 * 13 11 2 34 34 H 0.97000 * 120.00101 * 359.97438 * 14 13 11 35 35 H 1.08996 * 109.46996 * 60.00140 * 17 15 14 36 36 H 1.09001 * 109.47204 * 300.00231 * 17 15 14 37 37 H 1.08001 * 119.50067 * 0.26868 * 19 18 17 38 38 H 1.07995 * 119.51097 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.17436 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.17002 * 359.95297 * 23 22 21 41 41 H 1.08009 * 119.50457 * 180.02562 * 24 23 22 42 42 H 1.07991 * 119.50640 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.16734 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2204 -0.3460 5 6 1.5297 2.3479 0.4450 6 7 0.3756 2.2778 1.0697 7 14 2.3355 4.0081 0.1552 8 1 1.9737 4.5046 -1.1968 9 1 1.8626 4.9734 1.1799 10 1 3.8104 3.8661 0.2522 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 7 2.3372 -3.5858 0.0018 15 6 1.8880 -4.8566 0.0025 16 8 0.6956 -5.0782 0.0017 17 6 2.8672 -6.0020 0.0032 18 6 2.1137 -7.3071 0.0046 19 6 1.8656 -7.9527 1.1770 20 6 1.1765 -9.1635 1.1976 21 6 0.7299 -9.7353 0.0458 22 6 0.9666 -9.0980 -1.1839 23 6 0.5203 -9.6575 -2.3935 24 6 0.7673 -9.0116 -3.5656 25 6 1.4580 -7.8011 -3.5864 26 6 1.9049 -7.2294 -2.4350 27 6 1.6686 -7.8668 -1.2049 28 1 -0.3633 0.0390 1.0269 29 1 -0.3633 0.8698 -0.5473 30 1 -0.3634 -0.9089 -0.4796 31 1 -0.0575 3.0880 1.3806 32 1 0.7590 -2.5303 -0.8896 33 1 0.7583 -2.5298 0.8904 34 1 3.2909 -3.4086 0.0020 35 1 3.4938 -5.9437 0.8931 36 1 3.4939 -5.9448 -0.8868 37 1 2.2090 -7.5204 2.1052 38 1 0.9933 -9.6553 2.1414 39 1 0.1967 -10.6740 0.0769 40 1 -0.0156 -10.5952 -2.3928 41 1 0.4229 -9.4434 -4.4937 42 1 1.6412 -7.3094 -4.5302 43 1 2.4383 -6.2910 -2.4665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000303019420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:47 Heat of formation + Delta-G solvation = -19.435905 kcal Electronic energy + Delta-G solvation = -26316.006404 eV Core-core repulsion = 22519.214785 eV Total energy + Delta-G solvation = -3796.791619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.73905 -39.41653 -38.30064 -36.61060 -35.00573 -33.90145 -33.78413 -31.74677 -30.45886 -30.34956 -28.53279 -26.92617 -25.94632 -24.09970 -23.40519 -23.07414 -21.37930 -20.01526 -19.26817 -17.64280 -17.25312 -17.09411 -16.88709 -16.37579 -15.72915 -15.47995 -15.32971 -14.74226 -14.43961 -14.33330 -14.11240 -14.03451 -13.63914 -13.56385 -13.33395 -13.10883 -12.82580 -12.58054 -12.14609 -11.99593 -11.89975 -11.56742 -11.40565 -11.37060 -11.27212 -11.02701 -10.92805 -10.86102 -10.42494 -10.34971 -10.03381 -9.64335 -9.11326 -8.78264 -8.67652 -8.61252 -7.93470 -7.81864 -6.39794 -3.97458 0.42885 0.95118 1.94461 2.82652 2.88812 3.11262 3.20450 3.24606 3.43543 3.73450 4.04420 4.10334 4.36999 4.64373 4.70844 4.79360 4.80098 4.89630 5.02468 5.04895 5.09432 5.14478 5.27554 5.28696 5.40329 5.42216 5.63375 5.67809 5.85947 5.88963 5.97392 6.01638 6.12014 6.14976 6.28622 6.33773 6.43829 6.55120 6.66389 6.73261 6.82823 6.92313 7.17882 7.48287 7.80846 7.99589 8.35357 8.46588 9.05755 9.30098 9.81393 10.63105 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.002313 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.692060 B =12104.395646 C =12443.989491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.436 5.436 3 C -0.309 4.309 4 H 0.101 0.899 5 C 0.031 3.969 6 N -0.879 5.879 7 Si 0.930 3.070 8 H -0.276 1.276 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.433 3.567 12 O -0.593 6.593 13 C 0.111 3.889 14 N -0.710 5.710 15 C 0.511 3.489 16 O -0.538 6.538 17 C -0.106 4.106 18 C -0.045 4.045 19 C -0.107 4.107 20 C -0.111 4.111 21 C -0.111 4.111 22 C -0.051 4.051 23 C -0.109 4.109 24 C -0.118 4.118 25 C -0.119 4.119 26 C -0.100 4.100 27 C -0.034 4.034 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.029 0.971 31 H 0.269 0.731 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.410 0.590 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.121 0.879 42 H 0.122 0.878 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.509 -21.699 -4.193 22.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.153 5.153 3 C -0.437 4.437 4 H 0.119 0.881 5 C -0.172 4.172 6 N -0.518 5.518 7 Si 0.757 3.243 8 H -0.202 1.202 9 H -0.209 1.209 10 H -0.194 1.194 11 C 0.221 3.779 12 O -0.479 6.479 13 C -0.017 4.017 14 N -0.364 5.364 15 C 0.297 3.703 16 O -0.415 6.415 17 C -0.146 4.146 18 C -0.045 4.045 19 C -0.125 4.125 20 C -0.129 4.129 21 C -0.129 4.129 22 C -0.051 4.051 23 C -0.127 4.127 24 C -0.136 4.136 25 C -0.137 4.137 26 C -0.118 4.118 27 C -0.034 4.034 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.248 0.752 35 H 0.125 0.875 36 H 0.123 0.877 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.140 0.860 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.078 -21.650 -4.104 22.036 hybrid contribution 0.441 1.124 0.005 1.208 sum 0.519 -20.526 -4.100 20.938 Atomic orbital electron populations 1.21614 0.80678 0.99248 1.02135 1.43549 1.05796 1.04624 1.61369 1.19682 0.99241 0.83474 1.41280 0.88123 1.25388 0.96437 1.00227 0.95196 1.70004 1.16657 1.29458 1.35705 0.85878 0.79591 0.80817 0.78040 1.20206 1.20868 1.19352 1.19883 0.88095 0.84865 0.85101 1.90485 1.13708 1.86643 1.57098 1.21023 0.91841 0.85775 1.03025 1.45772 1.11601 1.04661 1.74394 1.20368 0.89625 0.83509 0.76840 1.90722 1.16612 1.84747 1.49391 1.20701 0.97738 0.90492 1.05688 1.19114 0.98152 0.94476 0.92805 1.20704 0.98971 0.95386 0.97450 1.20788 0.98152 0.95675 0.98304 1.20978 1.00322 0.99880 0.91752 1.18044 0.98563 0.94517 0.93973 1.20987 1.00029 0.99898 0.91775 1.20832 0.99050 0.95610 0.98085 1.20845 0.98588 0.95894 0.98368 1.21063 0.99670 0.99305 0.91777 1.17852 0.98071 0.94259 0.93242 0.92034 0.90828 0.95200 0.92035 0.90072 0.89814 0.75201 0.87536 0.87710 0.85940 0.85951 0.85750 0.85752 0.86133 0.86020 0.85778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 8.52 59.85 0.51 2.88 16 2 N -0.44 -10.95 3.02 -122.19 -0.37 -11.32 16 3 C -0.31 -8.42 9.31 -14.94 -0.14 -8.55 16 4 H 0.10 2.85 7.39 -52.49 -0.39 2.46 16 5 C 0.03 0.81 5.12 -17.47 -0.09 0.72 16 6 N -0.88 -23.01 10.56 55.50 0.59 -22.42 16 7 Si 0.93 20.32 29.57 -169.99 -5.03 15.30 16 8 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 9 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 10 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 11 C 0.43 10.18 7.70 -10.98 -0.08 10.09 16 12 O -0.59 -15.33 15.35 5.55 0.09 -15.25 16 13 C 0.11 2.11 4.68 -5.19 -0.02 2.09 16 14 N -0.71 -11.77 5.53 -61.47 -0.34 -12.11 16 15 C 0.51 7.96 7.82 -10.99 -0.09 7.88 16 16 O -0.54 -10.27 16.03 5.55 0.09 -10.18 16 17 C -0.11 -1.22 5.22 -29.04 -0.15 -1.38 16 18 C -0.05 -0.57 4.38 -104.53 -0.46 -1.02 16 19 C -0.11 -1.23 9.57 -39.93 -0.38 -1.61 16 20 C -0.11 -1.14 9.95 -39.93 -0.40 -1.54 16 21 C -0.11 -1.16 9.77 -39.49 -0.39 -1.54 16 22 C -0.05 -0.61 5.74 -106.83 -0.61 -1.22 16 23 C -0.11 -1.10 9.77 -39.48 -0.39 -1.49 16 24 C -0.12 -1.15 9.95 -39.93 -0.40 -1.55 16 25 C -0.12 -1.27 9.95 -39.93 -0.40 -1.67 16 26 C -0.10 -1.22 9.28 -39.48 -0.37 -1.59 16 27 C -0.03 -0.45 5.74 -106.83 -0.61 -1.06 16 28 H 0.06 1.42 7.56 -51.93 -0.39 1.02 16 29 H 0.07 1.71 7.00 -51.93 -0.36 1.34 16 30 H 0.03 0.56 6.36 -51.93 -0.33 0.23 16 31 H 0.27 6.67 8.31 -40.82 -0.34 6.34 16 32 H 0.08 1.49 7.41 -51.93 -0.38 1.11 16 33 H 0.08 1.59 8.11 -51.93 -0.42 1.17 16 34 H 0.41 6.54 7.44 -40.82 -0.30 6.24 16 35 H 0.11 0.98 8.04 -51.93 -0.42 0.56 16 36 H 0.10 1.00 6.72 -51.93 -0.35 0.65 16 37 H 0.12 1.19 8.04 -52.49 -0.42 0.77 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 40 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 41 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 42 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 43 H 0.12 1.41 6.49 -52.49 -0.34 1.06 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -32.91 363.00 -9.33 -42.23 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -5.36 Total: 8.84 kcal Atomic # 6 Polarization: 3.90 SS G_CDS: -4.46 Total: -0.56 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: -0.12 Total: -45.85 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.17 Total: -25.43 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.03 Total: 15.30 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.91 -9.33 -42.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303019420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.797 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds