Wall clock time and date at job start Tue Mar 31 2020 14:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37095 * 120.00219 * 2 1 4 4 H 1.08000 * 120.00010 * 201.70895 * 3 2 1 5 5 C 1.38946 * 120.00094 * 21.70434 * 3 2 1 6 6 N 1.31416 * 120.00065 * 11.33800 * 5 3 2 7 7 Si 1.86800 * 120.00149 * 191.34417 * 5 3 2 8 8 H 1.48500 * 109.47068 * 85.07387 * 7 5 3 9 9 H 1.48500 * 109.46839 * 205.06988 * 7 5 3 10 10 H 1.48493 * 109.46902 * 325.06890 * 7 5 3 11 11 C 1.34778 * 119.99911 * 179.97438 * 2 1 3 12 12 O 1.21290 * 120.00225 * 179.97438 * 11 2 1 13 13 C 1.50704 * 119.99860 * 0.02562 * 11 2 1 14 14 N 1.46497 * 109.47037 * 180.02562 * 13 11 2 15 15 C 1.34780 * 120.00309 * 179.97438 * 14 13 11 16 16 O 1.21285 * 119.99864 * 0.02562 * 15 14 13 17 17 C 1.50695 * 120.00295 * 179.97438 * 15 14 13 18 18 C 1.50703 * 109.47178 * 179.97438 * 17 15 14 19 19 C 1.36124 * 120.17635 * 264.72618 * 18 17 15 20 20 C 1.39331 * 120.99875 * 180.32747 * 19 18 17 21 21 C 1.36132 * 120.98184 * 359.91976 * 20 19 18 22 22 C 1.40502 * 119.65050 * 0.05096 * 21 20 19 23 23 C 1.40551 * 121.27667 * 180.02562 * 22 21 20 24 24 C 1.36085 * 119.65118 * 179.97438 * 23 22 21 25 25 C 1.39383 * 120.99486 * 0.02562 * 24 23 22 26 26 C 1.36095 * 120.99147 * 359.95952 * 25 24 23 27 27 C 1.40503 * 120.17044 * 85.00145 * 18 17 15 28 28 H 1.08998 * 109.47115 * 272.17603 * 1 2 3 29 29 H 1.09001 * 109.47034 * 32.18080 * 1 2 3 30 30 H 1.09002 * 109.47523 * 152.17954 * 1 2 3 31 31 H 0.96995 * 120.00118 * 179.97438 * 6 5 3 32 32 H 1.08996 * 109.47382 * 60.00029 * 13 11 2 33 33 H 1.09006 * 109.46900 * 299.99525 * 13 11 2 34 34 H 0.97000 * 120.00101 * 359.97438 * 14 13 11 35 35 H 1.08996 * 109.46996 * 60.00140 * 17 15 14 36 36 H 1.09001 * 109.47204 * 300.00231 * 17 15 14 37 37 H 1.08001 * 119.50067 * 0.26868 * 19 18 17 38 38 H 1.07995 * 119.51097 * 179.97438 * 20 19 18 39 39 H 1.08000 * 120.17436 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.17002 * 359.95297 * 23 22 21 41 41 H 1.08009 * 119.50457 * 180.02562 * 24 23 22 42 42 H 1.07991 * 119.50640 * 179.97438 * 25 24 23 43 43 H 1.07996 * 120.16734 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1731 1.2204 -0.3460 5 6 1.5297 2.3479 0.4450 6 7 0.3756 2.2778 1.0697 7 14 2.3355 4.0081 0.1552 8 1 1.9737 4.5046 -1.1968 9 1 1.8626 4.9734 1.1799 10 1 3.8104 3.8661 0.2522 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3853 -2.4723 0.0005 14 7 2.3372 -3.5858 0.0018 15 6 1.8880 -4.8566 0.0025 16 8 0.6956 -5.0782 0.0017 17 6 2.8672 -6.0020 0.0032 18 6 2.1137 -7.3071 0.0046 19 6 1.8656 -7.9527 1.1770 20 6 1.1765 -9.1635 1.1976 21 6 0.7299 -9.7353 0.0458 22 6 0.9666 -9.0980 -1.1839 23 6 0.5203 -9.6575 -2.3935 24 6 0.7673 -9.0116 -3.5656 25 6 1.4580 -7.8011 -3.5864 26 6 1.9049 -7.2294 -2.4350 27 6 1.6686 -7.8668 -1.2049 28 1 -0.3633 0.0390 1.0269 29 1 -0.3633 0.8698 -0.5473 30 1 -0.3634 -0.9089 -0.4796 31 1 -0.0575 3.0880 1.3806 32 1 0.7590 -2.5303 -0.8896 33 1 0.7583 -2.5298 0.8904 34 1 3.2909 -3.4086 0.0020 35 1 3.4938 -5.9437 0.8931 36 1 3.4939 -5.9448 -0.8868 37 1 2.2090 -7.5204 2.1052 38 1 0.9933 -9.6553 2.1414 39 1 0.1967 -10.6740 0.0769 40 1 -0.0156 -10.5952 -2.3928 41 1 0.4229 -9.4434 -4.4937 42 1 1.6412 -7.3094 -4.5302 43 1 2.4383 -6.2910 -2.4665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000303019420.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:46 Heat of formation + Delta-G solvation = -38.888293 kcal Electronic energy + Delta-G solvation = -26316.849922 eV Core-core repulsion = 22519.214785 eV Total energy + Delta-G solvation = -3797.635137 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.64572 -40.83453 -39.92613 -37.40646 -36.87108 -35.36153 -34.71420 -33.71707 -31.34674 -31.15097 -29.81690 -28.38972 -27.55424 -25.91953 -24.21344 -23.86191 -22.40916 -21.24183 -20.94643 -18.99461 -18.51458 -18.39875 -17.96137 -17.45900 -17.24270 -16.83956 -16.76655 -16.26203 -15.92627 -15.71437 -15.26552 -15.07984 -14.88720 -14.44985 -14.28536 -14.19977 -14.10126 -13.88615 -13.57214 -13.41708 -13.25138 -13.10992 -12.79650 -12.73673 -12.66763 -12.36520 -12.19630 -12.14584 -11.78833 -11.63986 -11.13164 -11.05126 -10.69102 -10.53751 -10.19009 -9.79077 -9.48306 -8.73820 -8.36924 -6.03587 -0.37241 0.14330 1.11252 1.36340 1.41620 1.53288 1.59687 1.88734 1.99661 2.18677 2.33543 3.01771 3.05462 3.22351 3.53671 3.81414 3.86394 3.91374 4.02761 4.05196 4.15585 4.30043 4.33216 4.37328 4.42261 4.48965 4.51198 4.59713 4.63657 4.68120 4.90392 4.99088 5.07919 5.24619 5.26847 5.33936 5.34298 5.38674 5.41771 5.54606 5.65121 5.74078 5.95923 6.01742 6.15619 6.37530 6.53067 7.07412 7.17887 7.37434 7.87818 8.64445 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.025023 B = 0.002313 C = 0.002250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.692060 B =12104.395646 C =12443.989491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.453 5.453 3 C -0.345 4.345 4 H 0.079 0.921 5 C -0.003 4.003 6 N -0.895 5.895 7 Si 0.994 3.006 8 H -0.266 1.266 9 H -0.274 1.274 10 H -0.273 1.273 11 C 0.431 3.569 12 O -0.621 6.621 13 C 0.125 3.875 14 N -0.710 5.710 15 C 0.516 3.484 16 O -0.573 6.573 17 C -0.097 4.097 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.122 4.122 21 C -0.113 4.113 22 C -0.076 4.076 23 C -0.112 4.112 24 C -0.125 4.125 25 C -0.123 4.123 26 C -0.127 4.127 27 C -0.057 4.057 28 H 0.049 0.951 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.275 0.725 32 H 0.091 0.909 33 H 0.087 0.913 34 H 0.414 0.586 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.135 0.865 38 H 0.148 0.852 39 H 0.152 0.848 40 H 0.151 0.849 41 H 0.148 0.852 42 H 0.138 0.862 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.136 -23.014 -4.467 23.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.171 5.171 3 C -0.473 4.473 4 H 0.097 0.903 5 C -0.205 4.205 6 N -0.533 5.533 7 Si 0.817 3.183 8 H -0.191 1.191 9 H -0.199 1.199 10 H -0.198 1.198 11 C 0.220 3.780 12 O -0.509 6.509 13 C -0.003 4.003 14 N -0.364 5.364 15 C 0.304 3.696 16 O -0.452 6.452 17 C -0.137 4.137 18 C -0.071 4.071 19 C -0.133 4.133 20 C -0.140 4.140 21 C -0.130 4.130 22 C -0.076 4.076 23 C -0.129 4.129 24 C -0.143 4.143 25 C -0.141 4.141 26 C -0.145 4.145 27 C -0.057 4.057 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.253 0.747 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.153 0.847 38 H 0.166 0.834 39 H 0.169 0.831 40 H 0.169 0.831 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.302 -22.983 -4.378 23.398 hybrid contribution 0.530 1.443 0.086 1.540 sum 0.228 -21.540 -4.292 21.964 Atomic orbital electron populations 1.21533 0.79201 1.00319 1.01534 1.43785 1.06864 1.04670 1.61775 1.19676 0.99069 0.85212 1.43323 0.90315 1.26158 0.96933 1.03047 0.94348 1.70081 1.17270 1.30559 1.35420 0.84936 0.78264 0.76600 0.78483 1.19096 1.19866 1.19817 1.20560 0.88010 0.85901 0.83573 1.90454 1.15155 1.87383 1.57931 1.20783 0.91764 0.84202 1.03549 1.45792 1.11355 1.04536 1.74754 1.21027 0.89812 0.83627 0.75175 1.90701 1.18438 1.85132 1.50950 1.20715 0.96915 0.88322 1.07714 1.19280 0.99438 0.95082 0.93272 1.21028 0.98749 0.95915 0.97653 1.21130 0.97817 0.95458 0.99545 1.21351 0.99802 1.00658 0.91214 1.18433 0.99072 0.94684 0.95437 1.21356 0.99551 1.00758 0.91252 1.21186 0.98601 0.95246 0.99267 1.21169 0.97976 0.96320 0.98631 1.21200 1.01052 0.99835 0.92372 1.18141 0.98766 0.95120 0.93681 0.93198 0.92215 0.91762 0.91535 0.89083 0.89538 0.74741 0.85064 0.85950 0.84676 0.83430 0.83072 0.83095 0.83433 0.84383 0.85949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.20 8.52 127.77 1.09 6.29 16 2 N -0.45 -23.09 3.02 -658.90 -1.99 -25.08 16 3 C -0.35 -19.18 9.31 84.04 0.78 -18.40 16 4 H 0.08 4.62 7.39 -2.91 -0.02 4.60 16 5 C 0.00 -0.14 5.12 84.92 0.43 0.30 16 6 N -0.90 -46.80 10.56 21.66 0.23 -46.57 16 7 Si 0.99 41.57 29.57 68.60 2.03 43.60 16 8 H -0.27 -10.64 7.11 99.48 0.71 -9.93 16 9 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 10 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 11 C 0.43 20.45 7.70 87.66 0.67 21.13 16 12 O -0.62 -32.70 15.35 -3.06 -0.05 -32.74 16 13 C 0.12 4.71 4.68 85.63 0.40 5.11 16 14 N -0.71 -23.23 5.53 -466.78 -2.58 -25.81 16 15 C 0.52 15.80 7.82 87.65 0.69 16.49 16 16 O -0.57 -21.77 16.03 -3.04 -0.05 -21.82 16 17 C -0.10 -2.16 5.22 29.10 0.15 -2.01 16 18 C -0.07 -1.73 4.38 -19.80 -0.09 -1.81 16 19 C -0.12 -2.52 9.57 22.04 0.21 -2.31 16 20 C -0.12 -2.30 9.95 22.04 0.22 -2.08 16 21 C -0.11 -2.13 9.77 22.33 0.22 -1.92 16 22 C -0.08 -1.74 5.74 -21.30 -0.12 -1.86 16 23 C -0.11 -2.05 9.77 22.33 0.22 -1.84 16 24 C -0.13 -2.22 9.95 22.04 0.22 -2.00 16 25 C -0.12 -2.52 9.95 22.05 0.22 -2.30 16 26 C -0.13 -3.07 9.28 22.33 0.21 -2.87 16 27 C -0.06 -1.47 5.74 -21.30 -0.12 -1.59 16 28 H 0.05 2.30 7.56 -2.39 -0.02 2.29 16 29 H 0.06 2.78 7.00 -2.39 -0.02 2.76 16 30 H 0.06 2.35 6.36 -2.39 -0.02 2.34 16 31 H 0.27 13.46 8.31 -92.71 -0.77 12.69 16 32 H 0.09 3.27 7.41 -2.39 -0.02 3.26 16 33 H 0.09 3.25 8.11 -2.38 -0.02 3.23 16 34 H 0.41 13.07 7.44 -92.71 -0.69 12.38 16 35 H 0.13 2.20 8.04 -2.39 -0.02 2.18 16 36 H 0.12 2.24 6.72 -2.39 -0.02 2.23 16 37 H 0.14 2.44 8.04 -2.91 -0.02 2.42 16 38 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 39 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 40 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 41 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 42 H 0.14 2.21 8.06 -2.92 -0.02 2.18 16 43 H 0.12 2.82 6.49 -2.91 -0.02 2.80 16 Total: -1.00 -71.87 363.00 3.35 -68.52 By element: Atomic # 1 Polarization: 31.22 SS G_CDS: 0.36 Total: 31.58 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: 5.40 Total: 8.33 kcal Atomic # 7 Polarization: -93.12 SS G_CDS: -4.34 Total: -97.46 kcal Atomic # 8 Polarization: -54.47 SS G_CDS: -0.10 Total: -54.57 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.60 kcal Total: -71.87 3.35 -68.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000303019420.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.629 kcal (2) G-P(sol) polarization free energy of solvation -71.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds