Wall clock time and date at job start Tue Mar 31 2020 14:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34783 * 119.99782 * 2 1 4 4 O 1.21544 * 120.00105 * 359.97438 * 3 2 1 5 5 C 1.47852 * 119.99737 * 179.97438 * 3 2 1 6 6 C 1.39581 * 120.14283 * 0.30039 * 5 3 2 7 7 C 1.37958 * 119.84519 * 180.20360 * 6 5 3 8 8 C 1.38358 * 120.15122 * 359.51675 * 7 6 5 9 9 C 1.50689 * 119.85623 * 180.25045 * 8 7 6 10 10 N 1.46506 * 109.47161 * 90.00222 * 9 8 7 11 11 C 1.39676 * 120.00098 * 180.02562 * 10 9 8 12 12 C 1.38995 * 120.04097 * 359.71782 * 11 10 9 13 13 C 1.38146 * 120.06328 * 179.74402 * 12 11 10 14 14 C 1.38176 * 120.14028 * 0.51576 * 13 12 11 15 15 C 1.38912 * 120.07965 * 359.76278 * 14 13 12 16 16 O 1.35749 * 120.03441 * 179.97438 * 15 14 13 17 17 C 1.34826 * 117.00112 * 174.48760 * 16 15 14 18 18 H 1.08001 * 120.00305 * 5.05201 * 17 16 15 19 19 C 1.38656 * 119.99709 * 185.05823 * 17 16 15 20 20 N 1.31553 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47307 * 59.99508 * 21 19 17 23 23 H 1.48503 * 109.47317 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47346 * 300.00195 * 21 19 17 25 25 C 1.38748 * 120.03672 * 179.97438 * 11 10 9 26 26 C 1.38365 * 120.28735 * 0.23037 * 8 7 6 27 27 C 1.37955 * 120.14815 * 0.02562 * 26 8 7 28 28 H 1.09001 * 109.47767 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47467 * 300.00216 * 1 2 3 30 30 H 1.08999 * 109.47478 * 59.99751 * 1 2 3 31 31 H 0.97003 * 120.00136 * 179.97438 * 2 1 3 32 32 H 1.07991 * 120.07436 * 359.97241 * 6 5 3 33 33 H 1.08006 * 119.91853 * 179.79044 * 7 6 5 34 34 H 1.09001 * 109.47627 * 209.99591 * 9 8 7 35 35 H 1.09004 * 109.47385 * 330.00442 * 9 8 7 36 36 H 0.97005 * 119.99681 * 359.97438 * 10 9 8 37 37 H 1.08003 * 119.96737 * 359.97438 * 12 11 10 38 38 H 1.07997 * 119.93482 * 180.23921 * 13 12 11 39 39 H 1.07998 * 119.95939 * 179.74474 * 14 13 12 40 40 H 0.97008 * 119.99810 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.07206 * 359.97438 * 25 11 10 42 42 H 1.08004 * 119.92354 * 180.02562 * 26 8 7 43 43 H 1.08003 * 120.07553 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5310 2.2199 -0.0005 5 6 3.6173 1.1673 0.0006 6 6 4.3182 -0.0398 -0.0052 7 6 5.6978 -0.0327 -0.0004 8 6 6.3865 1.1673 0.0001 9 6 7.8934 1.1673 -0.0004 10 7 8.3814 1.1681 -1.3818 11 6 9.7545 1.1678 -1.6374 12 6 10.6588 1.1726 -0.5819 13 6 12.0171 1.1669 -0.8341 14 6 12.4810 1.1671 -2.1357 15 6 11.5825 1.1682 -3.1951 16 8 12.0393 1.1690 -4.4734 17 6 11.1192 1.0546 -5.4523 18 1 10.0674 1.0498 -5.2070 19 6 11.5234 0.9429 -6.7739 20 7 12.8045 0.9490 -7.0728 21 14 10.2487 0.7837 -8.1301 22 1 9.3675 1.9790 -8.1242 23 1 10.9336 0.6807 -9.4437 24 1 9.4313 -0.4348 -7.9007 25 6 10.2175 1.1680 -2.9454 26 6 5.6977 2.3673 0.0005 27 6 4.3181 2.3743 0.0010 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9499 -0.8401 0.0004 32 1 3.7818 -0.9770 -0.0097 33 1 6.2413 -0.9660 -0.0014 34 1 8.2570 2.0571 0.5138 35 1 8.2570 0.2770 0.5128 36 1 7.7508 1.1682 -2.1189 37 1 10.2993 1.1770 0.4365 38 1 12.7178 1.1667 -0.0124 39 1 13.5434 1.1668 -2.3296 40 1 13.0872 0.8713 -7.9975 41 1 9.5170 1.1681 -3.7674 42 1 6.2413 3.3006 0.0004 43 1 3.7816 3.3116 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315128268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:56 Heat of formation + Delta-G solvation = -6.446898 kcal Electronic energy + Delta-G solvation = -25369.965498 eV Core-core repulsion = 21573.737125 eV Total energy + Delta-G solvation = -3796.228373 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.58656 -39.23210 -38.74618 -36.96730 -35.12363 -34.83637 -32.31371 -31.95044 -31.34686 -29.35980 -28.40085 -27.32860 -25.55132 -25.21763 -23.04957 -22.64716 -21.68224 -20.80728 -20.40915 -18.67304 -17.88241 -17.46909 -16.61223 -16.12494 -15.62797 -15.32565 -15.27867 -15.19583 -14.95304 -14.66600 -14.19996 -13.98480 -13.79125 -13.67085 -13.54333 -13.38878 -13.21145 -12.88835 -12.74182 -12.62944 -12.31487 -11.69910 -11.62408 -11.54302 -11.29574 -10.92374 -10.80567 -10.62454 -10.40394 -10.37680 -9.64946 -9.44576 -9.39654 -9.34559 -9.17386 -8.75085 -7.35304 -6.79880 -6.40067 -3.99359 0.40773 1.01842 2.37949 2.45160 2.56475 2.75102 3.15125 3.16411 3.18749 3.41809 3.95994 4.01038 4.22702 4.37142 4.49926 4.59979 4.70305 4.77829 4.98041 5.02226 5.05560 5.16242 5.30881 5.34809 5.38093 5.44234 5.56949 5.67282 5.70003 5.85467 5.90694 5.96717 5.99009 6.23650 6.27595 6.35570 6.49539 6.61915 6.65020 6.99859 7.02702 7.15551 7.38698 7.48755 7.65624 7.77189 7.99141 8.05769 8.17455 9.05932 9.78308 10.78122 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.002408 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.248647 B =11623.106043 C =13393.126976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.733 5.733 3 C 0.559 3.441 4 O -0.536 6.536 5 C -0.137 4.137 6 C -0.089 4.089 7 C -0.108 4.108 8 C -0.071 4.071 9 C 0.168 3.832 10 N -0.751 5.751 11 C 0.248 3.752 12 C -0.280 4.280 13 C -0.040 4.040 14 C -0.235 4.235 15 C 0.189 3.811 16 O -0.178 6.178 17 C -0.389 4.389 18 H 0.090 0.910 19 C 0.038 3.962 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.271 1.271 25 C -0.301 4.301 26 C -0.107 4.107 27 C -0.060 4.060 28 H 0.077 0.923 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.402 0.598 32 H 0.126 0.874 33 H 0.133 0.867 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.396 0.604 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.269 0.731 41 H 0.124 0.876 42 H 0.134 0.866 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.552 -3.842 16.048 25.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.385 5.385 3 C 0.347 3.653 4 O -0.413 6.413 5 C -0.140 4.140 6 C -0.107 4.107 7 C -0.127 4.127 8 C -0.072 4.072 9 C 0.044 3.956 10 N -0.383 5.383 11 C 0.148 3.852 12 C -0.303 4.303 13 C -0.059 4.059 14 C -0.256 4.256 15 C 0.134 3.866 16 O -0.081 6.081 17 C -0.466 4.466 18 H 0.107 0.893 19 C -0.165 4.165 20 N -0.499 5.499 21 Si 0.764 3.236 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.196 1.196 25 C -0.324 4.324 26 C -0.126 4.126 27 C -0.079 4.079 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.237 0.763 32 H 0.144 0.856 33 H 0.151 0.849 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.230 0.770 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.079 0.921 41 H 0.142 0.858 42 H 0.152 0.848 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -19.653 -3.086 15.928 25.485 hybrid contribution -0.800 -0.584 -0.974 1.389 sum -20.453 -3.670 14.954 25.601 Atomic orbital electron populations 1.21568 0.79108 1.02425 1.02570 1.45720 1.07990 1.08682 1.76145 1.18365 0.87367 0.83702 0.75915 1.90779 1.69982 1.31171 1.49401 1.19910 0.92429 0.94729 1.06945 1.21244 0.94520 0.96729 0.98233 1.21083 0.93719 0.98205 0.99647 1.20245 0.95890 0.93305 0.97764 1.20120 0.87963 1.02029 0.85509 1.44487 1.03930 1.84466 1.05452 1.17441 0.82454 0.92242 0.93108 1.20065 0.92891 1.20982 0.96349 1.20377 0.94396 0.95985 0.95151 1.20051 0.98603 1.16118 0.90826 1.19069 0.91188 0.90282 0.86021 1.83986 1.35620 1.78409 1.10065 1.21241 0.88464 1.52091 0.84755 0.89260 1.25265 0.97154 0.96699 0.97427 1.70031 1.14121 1.46227 1.19562 0.85815 0.79387 0.79099 0.79300 1.19590 1.20317 1.19608 1.20498 0.95928 1.21252 0.94750 1.21170 0.93736 0.98253 0.99437 1.21280 0.93839 0.97723 0.95076 0.90450 0.92038 0.91989 0.76294 0.85629 0.84946 0.91510 0.91537 0.77001 0.87840 0.87177 0.86901 0.92067 0.85823 0.84826 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.48 10.70 59.84 0.64 1.12 16 2 N -0.73 -5.03 5.66 -68.05 -0.39 -5.42 16 3 C 0.56 5.81 7.77 -12.32 -0.10 5.72 16 4 O -0.54 -7.52 16.35 5.33 0.09 -7.43 16 5 C -0.14 -1.31 5.87 -104.96 -0.62 -1.93 16 6 C -0.09 -0.67 9.54 -39.18 -0.37 -1.05 16 7 C -0.11 -0.91 9.68 -39.64 -0.38 -1.29 16 8 C -0.07 -0.68 5.25 -104.54 -0.55 -1.23 16 9 C 0.17 1.83 5.03 -5.20 -0.03 1.81 16 10 N -0.75 -10.67 5.72 -59.83 -0.34 -11.01 16 11 C 0.25 4.52 6.65 -83.82 -0.56 3.96 16 12 C -0.28 -4.84 9.31 -39.33 -0.37 -5.20 16 13 C -0.04 -0.73 10.03 -39.64 -0.40 -1.12 16 14 C -0.24 -5.08 9.99 -39.35 -0.39 -5.48 16 15 C 0.19 4.64 6.64 -39.14 -0.26 4.38 16 16 O -0.18 -5.14 9.76 0.06 0.00 -5.14 16 17 C -0.39 -10.97 9.49 30.89 0.29 -10.68 16 18 H 0.09 2.33 5.20 -52.49 -0.27 2.06 16 19 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 20 N -0.86 -25.56 13.67 55.48 0.76 -24.80 16 21 Si 0.94 20.71 29.55 -169.99 -5.02 15.68 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.00 7.11 56.52 0.40 -5.59 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.37 16 25 C -0.30 -6.57 9.01 -39.20 -0.35 -6.93 16 26 C -0.11 -1.03 9.68 -39.64 -0.38 -1.41 16 27 C -0.06 -0.60 9.60 -39.19 -0.38 -0.98 16 28 H 0.08 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.40 1.62 6.86 -40.82 -0.28 1.34 16 32 H 0.13 0.56 6.41 -52.49 -0.34 0.23 16 33 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 34 H 0.07 0.71 7.88 -51.93 -0.41 0.30 16 35 H 0.07 0.69 7.90 -51.93 -0.41 0.28 16 36 H 0.40 5.45 8.47 -40.82 -0.35 5.10 16 37 H 0.10 1.50 6.73 -52.48 -0.35 1.15 16 38 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 39 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 40 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.12 2.73 5.64 -52.48 -0.30 2.44 16 42 H 0.13 1.15 8.06 -52.48 -0.42 0.73 16 43 H 0.14 1.37 7.65 -52.48 -0.40 0.97 16 LS Contribution 369.48 15.07 5.57 5.57 Total: -1.00 -34.42 369.48 -8.83 -43.25 By element: Atomic # 1 Polarization: 13.83 SS G_CDS: -5.20 Total: 8.63 kcal Atomic # 6 Polarization: -15.04 SS G_CDS: -4.30 Total: -19.34 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.03 Total: -41.23 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.09 Total: -12.57 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.42 -8.83 -43.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315128268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.802 kcal (2) G-P(sol) polarization free energy of solvation -34.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds