Wall clock time and date at job start Tue Mar 31 2020 14:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.34783 * 119.99782 * 2 1 4 4 O 1.21544 * 120.00105 * 359.97438 * 3 2 1 5 5 C 1.47852 * 119.99737 * 179.97438 * 3 2 1 6 6 C 1.39581 * 120.14283 * 0.30039 * 5 3 2 7 7 C 1.37958 * 119.84519 * 180.20360 * 6 5 3 8 8 C 1.38358 * 120.15122 * 359.51675 * 7 6 5 9 9 C 1.50689 * 119.85623 * 180.25045 * 8 7 6 10 10 N 1.46506 * 109.47161 * 90.00222 * 9 8 7 11 11 C 1.39676 * 120.00098 * 180.02562 * 10 9 8 12 12 C 1.38995 * 120.04097 * 359.71782 * 11 10 9 13 13 C 1.38146 * 120.06328 * 179.74402 * 12 11 10 14 14 C 1.38176 * 120.14028 * 0.51576 * 13 12 11 15 15 C 1.38912 * 120.07965 * 359.76278 * 14 13 12 16 16 O 1.35749 * 120.03441 * 179.97438 * 15 14 13 17 17 C 1.34826 * 117.00112 * 174.48760 * 16 15 14 18 18 H 1.08001 * 120.00305 * 5.05201 * 17 16 15 19 19 C 1.38656 * 119.99709 * 185.05823 * 17 16 15 20 20 N 1.31553 * 120.00105 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99899 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47307 * 59.99508 * 21 19 17 23 23 H 1.48503 * 109.47317 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47346 * 300.00195 * 21 19 17 25 25 C 1.38748 * 120.03672 * 179.97438 * 11 10 9 26 26 C 1.38365 * 120.28735 * 0.23037 * 8 7 6 27 27 C 1.37955 * 120.14815 * 0.02562 * 26 8 7 28 28 H 1.09001 * 109.47767 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47467 * 300.00216 * 1 2 3 30 30 H 1.08999 * 109.47478 * 59.99751 * 1 2 3 31 31 H 0.97003 * 120.00136 * 179.97438 * 2 1 3 32 32 H 1.07991 * 120.07436 * 359.97241 * 6 5 3 33 33 H 1.08006 * 119.91853 * 179.79044 * 7 6 5 34 34 H 1.09001 * 109.47627 * 209.99591 * 9 8 7 35 35 H 1.09004 * 109.47385 * 330.00442 * 9 8 7 36 36 H 0.97005 * 119.99681 * 359.97438 * 10 9 8 37 37 H 1.08003 * 119.96737 * 359.97438 * 12 11 10 38 38 H 1.07997 * 119.93482 * 180.23921 * 13 12 11 39 39 H 1.07998 * 119.95939 * 179.74474 * 14 13 12 40 40 H 0.97008 * 119.99810 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.07206 * 359.97438 * 25 11 10 42 42 H 1.08004 * 119.92354 * 180.02562 * 26 8 7 43 43 H 1.08003 * 120.07553 * 180.02562 * 27 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 1.5310 2.2199 -0.0005 5 6 3.6173 1.1673 0.0006 6 6 4.3182 -0.0398 -0.0052 7 6 5.6978 -0.0327 -0.0004 8 6 6.3865 1.1673 0.0001 9 6 7.8934 1.1673 -0.0004 10 7 8.3814 1.1681 -1.3818 11 6 9.7545 1.1678 -1.6374 12 6 10.6588 1.1726 -0.5819 13 6 12.0171 1.1669 -0.8341 14 6 12.4810 1.1671 -2.1357 15 6 11.5825 1.1682 -3.1951 16 8 12.0393 1.1690 -4.4734 17 6 11.1192 1.0546 -5.4523 18 1 10.0674 1.0498 -5.2070 19 6 11.5234 0.9429 -6.7739 20 7 12.8045 0.9490 -7.0728 21 14 10.2487 0.7837 -8.1301 22 1 9.3675 1.9790 -8.1242 23 1 10.9336 0.6807 -9.4437 24 1 9.4313 -0.4348 -7.9007 25 6 10.2175 1.1680 -2.9454 26 6 5.6977 2.3673 0.0005 27 6 4.3181 2.3743 0.0010 28 1 -0.3635 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.9499 -0.8401 0.0004 32 1 3.7818 -0.9770 -0.0097 33 1 6.2413 -0.9660 -0.0014 34 1 8.2570 2.0571 0.5138 35 1 8.2570 0.2770 0.5128 36 1 7.7508 1.1682 -2.1189 37 1 10.2993 1.1770 0.4365 38 1 12.7178 1.1667 -0.0124 39 1 13.5434 1.1668 -2.3296 40 1 13.0872 0.8713 -7.9975 41 1 9.5170 1.1681 -3.7674 42 1 6.2413 3.3006 0.0004 43 1 3.7816 3.3116 0.0009 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315128268.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:19:55 Heat of formation + Delta-G solvation = -30.026298 kcal Electronic energy + Delta-G solvation = -25370.987977 eV Core-core repulsion = 21573.737125 eV Total energy + Delta-G solvation = -3797.250852 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.33027 -40.74057 -39.72589 -38.53996 -36.14714 -35.79839 -34.21547 -33.03077 -32.02462 -30.79004 -29.81767 -28.17370 -27.21087 -26.40115 -23.81817 -23.53706 -23.15923 -22.09972 -21.37016 -19.74929 -19.32176 -19.04048 -17.50813 -17.28527 -16.73910 -16.38362 -16.31095 -16.06437 -16.02451 -15.86373 -15.82521 -15.46411 -15.17287 -14.64333 -14.48711 -14.35023 -14.19658 -14.12675 -14.04521 -13.49557 -13.36380 -13.14819 -12.96269 -12.57532 -12.54830 -12.44953 -12.19974 -12.06083 -12.02313 -11.28741 -11.19239 -10.94068 -10.59539 -10.33307 -10.02063 -9.89279 -9.07602 -8.43728 -8.21994 -6.11831 -0.32674 0.34820 0.79326 0.94729 1.34680 1.46201 1.50919 1.67780 2.15570 2.19497 2.54601 2.91265 2.96458 3.29527 3.52727 3.62356 3.75030 3.79503 3.94674 4.23882 4.26413 4.33424 4.43524 4.44477 4.58543 4.60883 4.64614 4.66485 4.77054 4.80400 4.91648 5.00856 5.07637 5.16049 5.17666 5.19672 5.29603 5.31947 5.48269 5.51564 5.77853 5.81403 5.83750 6.05136 6.13686 6.42646 6.60677 6.83987 7.01575 7.09970 7.85524 8.79623 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012374 B = 0.002408 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2262.248647 B =11623.106043 C =13393.126976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.717 5.717 3 C 0.552 3.448 4 O -0.583 6.583 5 C -0.146 4.146 6 C -0.078 4.078 7 C -0.107 4.107 8 C -0.077 4.077 9 C 0.166 3.834 10 N -0.741 5.741 11 C 0.257 3.743 12 C -0.262 4.262 13 C -0.026 4.026 14 C -0.262 4.262 15 C 0.151 3.849 16 O -0.233 6.233 17 C -0.409 4.409 18 H 0.099 0.901 19 C -0.025 4.025 20 N -0.922 5.922 21 Si 1.017 2.983 22 H -0.259 1.259 23 H -0.272 1.272 24 H -0.257 1.257 25 C -0.316 4.316 26 C -0.111 4.111 27 C -0.076 4.076 28 H 0.115 0.885 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.418 0.582 32 H 0.161 0.839 33 H 0.151 0.849 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.398 0.602 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.105 0.895 40 H 0.272 0.728 41 H 0.112 0.888 42 H 0.138 0.862 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.863 -5.540 18.481 29.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.369 5.369 3 C 0.340 3.660 4 O -0.465 6.465 5 C -0.149 4.149 6 C -0.096 4.096 7 C -0.125 4.125 8 C -0.077 4.077 9 C 0.043 3.957 10 N -0.371 5.371 11 C 0.154 3.846 12 C -0.284 4.284 13 C -0.045 4.045 14 C -0.283 4.283 15 C 0.100 3.900 16 O -0.140 6.140 17 C -0.485 4.485 18 H 0.116 0.884 19 C -0.222 4.222 20 N -0.560 5.560 21 Si 0.836 3.164 22 H -0.184 1.184 23 H -0.196 1.196 24 H -0.182 1.182 25 C -0.340 4.340 26 C -0.129 4.129 27 C -0.095 4.095 28 H 0.133 0.867 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.256 0.744 32 H 0.178 0.822 33 H 0.169 0.831 34 H 0.094 0.906 35 H 0.101 0.899 36 H 0.232 0.768 37 H 0.164 0.836 38 H 0.170 0.830 39 H 0.123 0.877 40 H 0.081 0.919 41 H 0.129 0.871 42 H 0.156 0.844 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -22.020 -4.827 18.439 29.123 hybrid contribution -0.227 -0.076 -1.345 1.366 sum -22.246 -4.902 17.094 28.481 Atomic orbital electron populations 1.21733 0.78191 1.04596 1.01630 1.45676 1.08685 1.08368 1.74219 1.18615 0.87835 0.83972 0.75555 1.90754 1.70842 1.32947 1.51924 1.20004 0.92157 0.95425 1.07351 1.21551 0.94424 0.97246 0.96413 1.21337 0.94089 0.98437 0.98686 1.20160 0.95155 0.93741 0.98680 1.20325 0.88814 1.03211 0.83315 1.44639 1.02304 1.82770 1.07404 1.17501 0.84621 0.90648 0.91862 1.20578 0.92263 1.17653 0.97945 1.20842 0.95810 0.93355 0.94476 1.20278 0.98131 1.17931 0.91955 1.19655 0.93125 0.91904 0.85354 1.83946 1.36838 1.81384 1.11800 1.21722 0.89048 1.52302 0.85460 0.88409 1.26566 0.99612 0.96109 0.99895 1.70185 1.16650 1.48997 1.20194 0.84677 0.76455 0.79768 0.75474 1.18387 1.19615 1.18151 1.20508 0.94733 1.22375 0.96369 1.21221 0.93501 0.98753 0.99459 1.21311 0.94247 0.97892 0.96098 0.86691 0.92845 0.93149 0.74414 0.82193 0.83122 0.90565 0.89852 0.76777 0.83585 0.82987 0.87713 0.91942 0.87057 0.84383 0.85548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.70 127.77 1.37 2.12 16 2 N -0.72 -8.18 5.66 -487.48 -2.76 -10.94 16 3 C 0.55 10.90 7.77 86.79 0.67 11.58 16 4 O -0.58 -16.60 16.35 -3.85 -0.06 -16.67 16 5 C -0.15 -2.54 5.87 -20.09 -0.12 -2.66 16 6 C -0.08 -0.91 9.54 22.53 0.21 -0.69 16 7 C -0.11 -1.38 9.68 22.23 0.22 -1.17 16 8 C -0.08 -1.22 5.25 -19.81 -0.10 -1.32 16 9 C 0.17 2.91 5.03 85.63 0.43 3.34 16 10 N -0.74 -18.75 5.72 -343.19 -1.96 -20.72 16 11 C 0.26 8.76 6.65 38.19 0.25 9.01 16 12 C -0.26 -7.94 9.31 22.43 0.21 -7.74 16 13 C -0.03 -0.87 10.03 22.23 0.22 -0.65 16 14 C -0.26 -11.47 9.99 22.42 0.22 -11.24 16 15 C 0.15 7.71 6.64 22.56 0.15 7.86 16 16 O -0.23 -14.40 9.76 -22.69 -0.22 -14.63 16 17 C -0.41 -24.30 9.49 67.92 0.64 -23.65 16 18 H 0.10 5.36 5.20 -2.91 -0.02 5.34 16 19 C -0.02 -1.43 5.49 84.83 0.47 -0.96 16 20 N -0.92 -57.49 13.67 21.61 0.30 -57.20 16 21 Si 1.02 43.55 29.55 68.60 2.03 45.58 16 22 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 C -0.32 -13.96 9.01 22.52 0.20 -13.76 16 26 C -0.11 -1.91 9.68 22.23 0.22 -1.70 16 27 C -0.08 -1.48 9.60 22.53 0.22 -1.26 16 28 H 0.11 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.42 1.86 6.86 -92.71 -0.64 1.22 16 32 H 0.16 0.66 6.41 -2.92 -0.02 0.65 16 33 H 0.15 1.43 8.06 -2.91 -0.02 1.41 16 34 H 0.08 1.26 7.88 -2.39 -0.02 1.24 16 35 H 0.08 1.27 7.90 -2.38 -0.02 1.25 16 36 H 0.40 10.03 8.47 -92.70 -0.79 9.24 16 37 H 0.15 3.27 6.73 -2.91 -0.02 3.25 16 38 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 39 H 0.10 4.61 8.06 -2.91 -0.02 4.58 16 40 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 41 H 0.11 5.08 5.64 -2.91 -0.02 5.06 16 42 H 0.14 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.13 2.63 7.65 -2.91 -0.02 2.61 16 Total: -1.00 -81.90 369.48 2.44 -79.46 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.35 Total: 28.00 kcal Atomic # 6 Polarization: -38.37 SS G_CDS: 5.49 Total: -32.89 kcal Atomic # 7 Polarization: -84.43 SS G_CDS: -4.43 Total: -88.86 kcal Atomic # 8 Polarization: -31.01 SS G_CDS: -0.28 Total: -31.29 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -81.90 2.44 -79.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315128268.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.432 kcal (2) G-P(sol) polarization free energy of solvation -81.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.459 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds