Wall clock time and date at job start Tue Mar 31 2020 14:57:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00393 * 2 1 4 4 H 1.48496 * 109.47201 * 240.00162 * 3 2 1 5 5 H 1.48502 * 109.46808 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47138 * 119.99580 * 3 2 1 7 7 C 1.37882 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99770 * 179.97438 * 10 9 7 12 12 O 1.21589 * 120.00132 * 4.97860 * 11 10 9 13 13 N 1.34776 * 120.00059 * 184.97367 * 11 10 9 14 14 C 1.46992 * 121.33053 * 354.82838 * 13 11 10 15 15 C 1.50349 * 109.18363 * 223.05254 * 14 13 11 16 16 C 1.31263 * 123.41410 * 349.40071 * 15 14 13 17 17 C 1.47613 * 117.81619 * 180.58328 * 16 15 14 18 18 C 1.35777 * 126.74544 * 104.75890 * 17 16 15 19 19 N 1.36538 * 109.70337 * 179.97438 * 18 17 16 20 20 H 0.96994 * 124.82795 * 179.97438 * 19 18 17 21 21 C 1.37550 * 110.34691 * 359.97438 * 19 18 17 22 22 N 1.32708 * 132.95982 * 179.97438 * 21 19 18 23 23 C 1.31582 * 121.68511 * 179.97438 * 22 21 19 24 24 C 1.38626 * 121.55187 * 0.02562 * 23 22 21 25 25 C 1.38291 * 119.35710 * 359.97438 * 24 23 22 26 26 C 1.39450 * 118.05993 * 359.73921 * 25 24 23 27 27 C 1.49985 * 124.36579 * 0.29623 * 16 15 14 28 28 C 1.47312 * 121.33411 * 174.79854 * 13 11 10 29 29 H 0.96997 * 120.00017 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46810 * 59.99730 * 9 7 2 31 31 H 1.08995 * 109.47273 * 300.00186 * 9 7 2 32 32 H 0.96996 * 120.00217 * 0.02562 * 10 9 7 33 33 H 1.08996 * 109.52643 * 343.14892 * 14 13 11 34 34 H 1.09000 * 109.52190 * 103.34813 * 14 13 11 35 35 H 1.08006 * 118.28659 * 169.16474 * 15 14 13 36 36 H 1.08003 * 125.14564 * 359.92506 * 18 17 16 37 37 H 1.07997 * 119.22539 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.32631 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.97222 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.31096 * 101.56087 * 27 16 15 41 41 H 1.09002 * 109.31767 * 220.98425 * 27 16 15 42 42 H 1.08995 * 109.75814 * 358.10175 * 28 13 11 43 43 H 1.08995 * 109.80262 * 237.35628 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5618 -5.1069 -0.0899 13 7 2.6252 -5.9064 0.1022 14 6 4.0770 -5.6765 0.1005 15 6 4.7391 -6.7050 -0.7737 16 6 4.1157 -7.7567 -1.2516 17 6 4.8897 -8.6954 -2.0874 18 6 5.3543 -9.9171 -1.7197 19 7 6.0241 -10.4882 -2.7634 20 1 6.4457 -11.3614 -2.7398 21 6 6.0161 -9.6491 -3.8533 22 7 6.5214 -9.7502 -5.0763 23 6 6.3782 -8.7903 -5.9648 24 6 5.6917 -7.6232 -5.6676 25 6 5.1429 -7.4614 -4.4086 26 6 5.3024 -8.4946 -3.4857 27 6 2.6709 -8.0713 -1.0001 28 6 2.1611 -7.2995 0.2197 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8902 32 1 3.1565 -3.4355 0.0009 33 1 4.2874 -4.6784 -0.2836 34 1 4.4610 -5.7652 1.1168 35 1 5.7808 -6.5695 -1.0244 36 1 5.2157 -10.3684 -0.7483 37 1 6.8063 -8.9142 -6.9485 38 1 5.5864 -6.8478 -6.4120 39 1 4.6026 -6.5631 -4.1491 40 1 2.0836 -7.7920 -1.8748 41 1 2.5605 -9.1410 -0.8219 42 1 1.0716 -7.3243 0.2425 43 1 2.5590 -7.7458 1.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336105308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:37 Heat of formation + Delta-G solvation = 63.303518 kcal Electronic energy + Delta-G solvation = -26393.577697 eV Core-core repulsion = 22632.666680 eV Total energy + Delta-G solvation = -3760.911017 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.77112 -39.78035 -38.15271 -37.17790 -34.21544 -33.90695 -32.58931 -32.11154 -30.92265 -30.08209 -29.15287 -27.14150 -25.25584 -23.95417 -23.67017 -22.75120 -22.26430 -20.85448 -19.61264 -18.65511 -18.44579 -17.03588 -16.77813 -16.14878 -15.93608 -15.81561 -15.27283 -15.19767 -14.97298 -14.64332 -14.35682 -13.99232 -13.67637 -13.51158 -13.30836 -13.15495 -13.06968 -12.60743 -12.43493 -12.32656 -12.15213 -11.90122 -11.67633 -11.48903 -10.95363 -10.86538 -10.83892 -10.52160 -10.27367 -9.67742 -9.37976 -9.35057 -8.94858 -8.72688 -8.70340 -8.39419 -8.14101 -7.70533 -6.13026 -4.19577 0.74852 1.13487 1.91434 2.37851 2.50237 3.18654 3.27271 3.32320 3.34301 3.67093 3.92110 4.21731 4.33145 4.41325 4.48999 4.71384 4.75446 4.93284 4.94934 5.01333 5.08509 5.18682 5.22933 5.28958 5.33796 5.44979 5.52762 5.60237 5.63236 5.76241 5.95263 6.04516 6.09173 6.15686 6.23450 6.45629 6.69071 6.74184 6.80749 6.99071 7.18620 7.53971 7.57647 7.60337 7.75400 7.89222 8.04929 8.78116 8.93007 9.34737 9.50177 10.97221 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.002626 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.649432 B =10660.963478 C =11778.494328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.903 3.097 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.701 3.299 12 O -0.598 6.598 13 N -0.640 5.640 14 C 0.145 3.855 15 C -0.154 4.154 16 C -0.043 4.043 17 C -0.128 4.128 18 C 0.070 3.930 19 N -0.579 5.579 20 H 0.419 0.581 21 C 0.282 3.718 22 N -0.503 5.503 23 C 0.136 3.864 24 C -0.202 4.202 25 C -0.023 4.023 26 C -0.138 4.138 27 C -0.093 4.093 28 C 0.133 3.867 29 H 0.266 0.734 30 H 0.025 0.975 31 H 0.024 0.976 32 H 0.385 0.615 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.116 0.884 36 H 0.180 0.820 37 H 0.160 0.840 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.096 0.904 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.915 -21.232 -5.281 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.580 4.580 8 H 0.079 0.921 9 C 0.146 3.854 10 N -0.383 5.383 11 C 0.402 3.598 12 O -0.477 6.477 13 N -0.380 5.380 14 C 0.022 3.978 15 C -0.173 4.173 16 C -0.044 4.044 17 C -0.135 4.135 18 C -0.057 4.057 19 N -0.185 5.185 20 H 0.257 0.743 21 C 0.049 3.951 22 N -0.216 5.216 23 C -0.029 4.029 24 C -0.224 4.224 25 C -0.049 4.049 26 C -0.145 4.145 27 C -0.131 4.131 28 C 0.009 3.991 29 H 0.076 0.924 30 H 0.043 0.957 31 H 0.042 0.958 32 H 0.219 0.781 33 H 0.108 0.892 34 H 0.093 0.907 35 H 0.134 0.866 36 H 0.197 0.803 37 H 0.177 0.823 38 H 0.156 0.844 39 H 0.154 0.846 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.114 0.886 43 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.315 -22.102 -5.463 26.893 hybrid contribution 0.826 1.301 0.079 1.543 sum 15.141 -20.801 -5.384 26.286 Atomic orbital electron populations 1.69967 1.06083 1.27353 1.48883 1.24938 0.94903 0.99352 0.94783 0.86483 0.79414 0.82383 0.78658 1.20088 1.21093 1.20091 1.21181 0.93180 0.90464 1.53197 0.92069 1.18976 0.87806 0.81074 0.97588 1.45846 1.10806 1.04415 1.77196 1.15989 0.84695 0.80944 0.78159 1.90858 1.14362 1.83808 1.58676 1.47360 1.04995 1.06152 1.79542 1.20375 0.80504 0.98135 0.98805 1.22751 0.99932 0.95431 0.99136 1.18806 0.94152 0.94305 0.97126 1.19109 1.06106 0.95758 0.92565 1.21964 0.97438 0.93886 0.92379 1.41405 1.49471 1.18398 1.09232 0.74302 1.18365 0.98265 0.89995 0.88450 1.66488 1.22703 1.32231 1.00225 1.22430 0.95053 0.88357 0.97107 1.21919 1.02577 1.00117 0.97745 1.21036 0.94998 0.97200 0.91673 1.19784 1.03555 0.95941 0.95176 1.20756 0.92451 1.00223 0.99684 1.21385 1.01418 0.80039 0.96253 0.92419 0.95700 0.95817 0.78053 0.89236 0.90656 0.86646 0.80251 0.82298 0.84407 0.84629 0.90316 0.90368 0.88580 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.22 13.29 55.43 0.74 -25.48 16 2 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 9 C 0.27 7.20 5.43 -5.19 -0.03 7.17 16 10 N -0.73 -15.90 5.45 -66.41 -0.36 -16.26 16 11 C 0.70 14.80 8.32 -86.91 -0.72 14.08 16 12 O -0.60 -15.09 15.85 5.29 0.08 -15.01 16 13 N -0.64 -10.03 2.96 -179.90 -0.53 -10.57 16 14 C 0.15 1.76 6.47 -5.10 -0.03 1.72 16 15 C -0.15 -1.65 9.58 -36.26 -0.35 -2.00 16 16 C -0.04 -0.46 5.71 -102.93 -0.59 -1.05 16 17 C -0.13 -1.31 5.40 -103.33 -0.56 -1.87 16 18 C 0.07 0.54 11.80 -16.34 -0.19 0.35 16 19 N -0.58 -4.73 6.02 -11.88 -0.07 -4.80 16 20 H 0.42 2.25 8.96 -40.82 -0.37 1.88 16 21 C 0.28 3.17 8.41 -155.59 -1.31 1.86 16 22 N -0.50 -5.73 10.39 -12.29 -0.13 -5.86 16 23 C 0.14 1.27 11.15 -17.52 -0.20 1.08 16 24 C -0.20 -1.86 10.10 -39.42 -0.40 -2.26 16 25 C -0.02 -0.25 10.22 -39.11 -0.40 -0.65 16 26 C -0.14 -1.60 6.37 -104.92 -0.67 -2.27 16 27 C -0.09 -1.03 5.95 -28.19 -0.17 -1.20 16 28 C 0.13 1.72 6.48 -3.56 -0.02 1.70 16 29 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 30 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.02 0.71 8.14 -51.93 -0.42 0.28 16 32 H 0.39 7.23 6.00 -40.82 -0.25 6.99 16 33 H 0.09 1.09 6.04 -51.93 -0.31 0.78 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.12 1.14 7.94 -52.48 -0.42 0.72 16 36 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.14 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.14 1.44 8.06 -52.49 -0.42 1.01 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.08 0.68 8.13 -51.93 -0.42 0.26 16 42 H 0.10 1.43 7.08 -51.93 -0.37 1.06 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 363.96 15.07 5.48 5.48 Total: -1.00 -35.72 363.96 -11.33 -47.05 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -5.47 Total: 6.37 kcal Atomic # 6 Polarization: 9.28 SS G_CDS: -6.05 Total: 3.23 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: -0.36 Total: -62.97 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: 0.08 Total: -15.01 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.72 -11.33 -47.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336105308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.350 kcal (2) G-P(sol) polarization free energy of solvation -35.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.330 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds