Wall clock time and date at job start Tue Mar 31 2020 14:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00393 * 2 1 4 4 H 1.48496 * 109.47201 * 240.00162 * 3 2 1 5 5 H 1.48502 * 109.46808 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47138 * 119.99580 * 3 2 1 7 7 C 1.37882 * 119.99684 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99861 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00050 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99770 * 179.97438 * 10 9 7 12 12 O 1.21589 * 120.00132 * 4.97860 * 11 10 9 13 13 N 1.34776 * 120.00059 * 184.97367 * 11 10 9 14 14 C 1.46992 * 121.33053 * 354.82838 * 13 11 10 15 15 C 1.50349 * 109.18363 * 223.05254 * 14 13 11 16 16 C 1.31263 * 123.41410 * 349.40071 * 15 14 13 17 17 C 1.47613 * 117.81619 * 180.58328 * 16 15 14 18 18 C 1.35777 * 126.74544 * 104.75890 * 17 16 15 19 19 N 1.36538 * 109.70337 * 179.97438 * 18 17 16 20 20 H 0.96994 * 124.82795 * 179.97438 * 19 18 17 21 21 C 1.37550 * 110.34691 * 359.97438 * 19 18 17 22 22 N 1.32708 * 132.95982 * 179.97438 * 21 19 18 23 23 C 1.31582 * 121.68511 * 179.97438 * 22 21 19 24 24 C 1.38626 * 121.55187 * 0.02562 * 23 22 21 25 25 C 1.38291 * 119.35710 * 359.97438 * 24 23 22 26 26 C 1.39450 * 118.05993 * 359.73921 * 25 24 23 27 27 C 1.49985 * 124.36579 * 0.29623 * 16 15 14 28 28 C 1.47312 * 121.33411 * 174.79854 * 13 11 10 29 29 H 0.96997 * 120.00017 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46810 * 59.99730 * 9 7 2 31 31 H 1.08995 * 109.47273 * 300.00186 * 9 7 2 32 32 H 0.96996 * 120.00217 * 0.02562 * 10 9 7 33 33 H 1.08996 * 109.52643 * 343.14892 * 14 13 11 34 34 H 1.09000 * 109.52190 * 103.34813 * 14 13 11 35 35 H 1.08006 * 118.28659 * 169.16474 * 15 14 13 36 36 H 1.08003 * 125.14564 * 359.92506 * 18 17 16 37 37 H 1.07997 * 119.22539 * 179.97438 * 23 22 21 38 38 H 1.08004 * 120.32631 * 179.97438 * 24 23 22 39 39 H 1.07993 * 120.97222 * 180.02562 * 25 24 23 40 40 H 1.09000 * 109.31096 * 101.56087 * 27 16 15 41 41 H 1.09002 * 109.31767 * 220.98425 * 27 16 15 42 42 H 1.08995 * 109.75814 * 358.10175 * 28 13 11 43 43 H 1.08995 * 109.80262 * 237.35628 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1942 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7536 -4.8834 0.0011 12 8 0.5618 -5.1069 -0.0899 13 7 2.6252 -5.9064 0.1022 14 6 4.0770 -5.6765 0.1005 15 6 4.7391 -6.7050 -0.7737 16 6 4.1157 -7.7567 -1.2516 17 6 4.8897 -8.6954 -2.0874 18 6 5.3543 -9.9171 -1.7197 19 7 6.0241 -10.4882 -2.7634 20 1 6.4457 -11.3614 -2.7398 21 6 6.0161 -9.6491 -3.8533 22 7 6.5214 -9.7502 -5.0763 23 6 6.3782 -8.7903 -5.9648 24 6 5.6917 -7.6232 -5.6676 25 6 5.1429 -7.4614 -4.4086 26 6 5.3024 -8.4946 -3.4857 27 6 2.6709 -8.0713 -1.0001 28 6 2.1611 -7.2995 0.2197 29 1 -0.4850 0.8400 -0.0004 30 1 0.6246 -2.5570 -0.8897 31 1 0.6239 -2.5567 0.8902 32 1 3.1565 -3.4355 0.0009 33 1 4.2874 -4.6784 -0.2836 34 1 4.4610 -5.7652 1.1168 35 1 5.7808 -6.5695 -1.0244 36 1 5.2157 -10.3684 -0.7483 37 1 6.8063 -8.9142 -6.9485 38 1 5.5864 -6.8478 -6.4120 39 1 4.6026 -6.5631 -4.1491 40 1 2.0836 -7.7920 -1.8748 41 1 2.5605 -9.1410 -0.8219 42 1 1.0716 -7.3243 0.2425 43 1 2.5590 -7.7458 1.1310 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336105308.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:36 Heat of formation + Delta-G solvation = 40.008535 kcal Electronic energy + Delta-G solvation = -26394.587843 eV Core-core repulsion = 22632.666680 eV Total energy + Delta-G solvation = -3761.921163 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.47191 -41.24079 -38.99242 -38.34104 -36.17732 -35.00295 -34.29341 -33.21519 -31.99727 -30.83698 -30.04381 -29.02188 -26.41613 -25.03257 -24.65931 -23.96734 -23.43514 -21.96459 -20.89691 -20.02629 -19.36048 -18.20250 -17.77266 -17.54376 -17.31705 -16.77832 -16.66712 -16.42655 -16.00265 -15.75061 -15.34699 -15.30108 -15.04881 -14.75093 -14.38796 -14.21276 -14.03193 -13.97278 -13.82569 -13.48067 -13.18689 -13.10561 -12.93237 -12.83444 -12.65716 -12.50376 -12.19937 -11.83813 -11.47873 -11.31494 -11.16801 -10.77507 -10.45127 -10.04371 -9.76960 -9.43791 -9.37747 -8.84363 -8.26426 -6.43064 0.02669 0.39656 1.10081 1.44507 1.49225 1.57021 1.67669 1.78914 1.87893 2.23329 2.40355 2.92052 3.08336 3.22628 3.56343 3.62321 3.86930 3.99177 4.05183 4.13023 4.19231 4.28538 4.33738 4.41834 4.55884 4.61005 4.69561 4.77729 4.82083 4.90554 4.97848 5.05403 5.14118 5.29001 5.33166 5.37042 5.49575 5.53603 5.58084 5.63031 5.77003 5.87240 5.94687 5.98743 6.19507 6.41316 6.68213 7.04821 7.20033 7.27087 7.71794 8.85820 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015624 B = 0.002626 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.649432 B =10660.963478 C =11778.494328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.985 3.015 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.261 1.261 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.724 5.724 11 C 0.696 3.304 12 O -0.648 6.648 13 N -0.631 5.631 14 C 0.141 3.859 15 C -0.153 4.153 16 C -0.037 4.037 17 C -0.161 4.161 18 C 0.099 3.901 19 N -0.569 5.569 20 H 0.433 0.567 21 C 0.258 3.742 22 N -0.521 5.521 23 C 0.128 3.872 24 C -0.199 4.199 25 C -0.048 4.048 26 C -0.157 4.157 27 C -0.085 4.085 28 C 0.128 3.872 29 H 0.269 0.731 30 H -0.017 1.017 31 H -0.014 1.014 32 H 0.402 0.598 33 H 0.087 0.913 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.221 0.779 37 H 0.189 0.811 38 H 0.160 0.840 39 H 0.129 0.871 40 H 0.052 0.948 41 H 0.109 0.891 42 H 0.070 0.930 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.080 -22.175 -4.961 29.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.808 3.192 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.185 1.185 7 C -0.593 4.593 8 H 0.101 0.899 9 C 0.163 3.837 10 N -0.379 5.379 11 C 0.397 3.603 12 O -0.531 6.531 13 N -0.369 5.369 14 C 0.019 3.981 15 C -0.172 4.172 16 C -0.038 4.038 17 C -0.168 4.168 18 C -0.029 4.029 19 N -0.176 5.176 20 H 0.273 0.727 21 C 0.025 3.975 22 N -0.234 5.234 23 C -0.038 4.038 24 C -0.220 4.220 25 C -0.074 4.074 26 C -0.164 4.164 27 C -0.123 4.123 28 C 0.005 3.995 29 H 0.078 0.922 30 H 0.001 0.999 31 H 0.004 0.996 32 H 0.239 0.761 33 H 0.105 0.895 34 H 0.120 0.880 35 H 0.147 0.853 36 H 0.237 0.763 37 H 0.206 0.794 38 H 0.177 0.823 39 H 0.147 0.853 40 H 0.071 0.929 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 17.571 -23.122 -5.143 29.493 hybrid contribution -0.161 1.454 -0.050 1.464 sum 17.410 -21.668 -5.193 28.277 Atomic orbital electron populations 1.70139 1.08290 1.28624 1.49886 1.26065 0.95771 1.03845 0.93840 0.85202 0.77909 0.76535 0.79532 1.18681 1.21104 1.18523 1.21553 0.94245 0.90446 1.53028 0.89899 1.18395 0.88096 0.83366 0.93840 1.45442 1.10838 1.03870 1.77763 1.16172 0.84699 0.81562 0.77834 1.90818 1.16927 1.84619 1.60715 1.47380 1.06067 1.05865 1.77606 1.20652 0.77965 0.98685 1.00821 1.22703 1.00441 0.94865 0.99144 1.18741 0.93621 0.94576 0.96904 1.19076 1.08314 0.97157 0.92262 1.22562 0.94580 0.92596 0.93133 1.41494 1.48969 1.18647 1.08497 0.72691 1.18633 0.98971 0.90740 0.89127 1.66545 1.23197 1.33037 1.00669 1.22974 0.94811 0.87958 0.98015 1.22201 1.01563 1.00666 0.97544 1.21179 0.96125 0.97353 0.92762 1.20072 1.03944 0.96319 0.96070 1.20685 0.92474 1.01644 0.97515 1.21643 1.00318 0.78711 0.98819 0.92237 0.99916 0.99626 0.76072 0.89504 0.88048 0.85344 0.76268 0.79378 0.82255 0.85338 0.92916 0.87305 0.91100 0.88325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.75 13.29 21.45 0.28 -56.47 16 2 C 0.00 0.25 5.46 84.66 0.46 0.71 16 3 Si 0.99 42.44 29.54 68.60 2.03 44.47 16 4 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 5 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 6 H -0.26 -10.57 7.11 99.48 0.71 -9.87 16 7 C -0.55 -30.61 9.28 25.60 0.24 -30.37 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.29 16.24 5.43 85.63 0.47 16.70 16 10 N -0.72 -32.48 5.45 -482.29 -2.63 -35.11 16 11 C 0.70 30.40 8.32 179.05 1.49 31.89 16 12 O -0.65 -34.61 15.85 -4.00 -0.06 -34.67 16 13 N -0.63 -19.55 2.96 -841.34 -2.49 -22.04 16 14 C 0.14 3.15 6.47 85.43 0.55 3.70 16 15 C -0.15 -2.97 9.58 25.28 0.24 -2.73 16 16 C -0.04 -0.74 5.71 -17.91 -0.10 -0.84 16 17 C -0.16 -2.98 5.40 -19.03 -0.10 -3.08 16 18 C 0.10 1.19 11.80 83.39 0.98 2.17 16 19 N -0.57 -7.85 6.02 -191.50 -1.15 -9.01 16 20 H 0.43 3.46 8.96 -92.71 -0.83 2.63 16 21 C 0.26 5.45 8.41 133.83 1.13 6.57 16 22 N -0.52 -11.26 10.39 -192.78 -2.00 -13.27 16 23 C 0.13 2.22 11.15 84.82 0.95 3.17 16 24 C -0.20 -3.51 10.10 22.37 0.23 -3.28 16 25 C -0.05 -1.04 10.22 22.57 0.23 -0.81 16 26 C -0.16 -3.51 6.37 -20.06 -0.13 -3.64 16 27 C -0.09 -1.79 5.95 29.65 0.18 -1.61 16 28 C 0.13 3.20 6.48 86.25 0.56 3.76 16 29 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 30 H -0.02 -1.10 8.14 -2.38 -0.02 -1.12 16 31 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 32 H 0.40 15.03 6.00 -92.71 -0.56 14.48 16 33 H 0.09 2.00 6.04 -2.39 -0.01 1.98 16 34 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.13 2.23 7.94 -2.91 -0.02 2.20 16 36 H 0.22 0.74 8.06 -2.91 -0.02 0.72 16 37 H 0.19 1.92 8.06 -2.91 -0.02 1.89 16 38 H 0.16 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.13 2.84 8.06 -2.91 -0.02 2.81 16 40 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.11 1.61 8.13 -2.39 -0.02 1.59 16 42 H 0.07 2.16 7.08 -2.39 -0.02 2.15 16 43 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -82.19 363.96 1.01 -81.18 By element: Atomic # 1 Polarization: 22.91 SS G_CDS: -0.32 Total: 22.59 kcal Atomic # 6 Polarization: 14.95 SS G_CDS: 7.36 Total: 22.32 kcal Atomic # 7 Polarization: -127.90 SS G_CDS: -7.99 Total: -135.89 kcal Atomic # 8 Polarization: -34.61 SS G_CDS: -0.06 Total: -34.67 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -82.19 1.01 -81.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336105308.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.191 kcal (2) G-P(sol) polarization free energy of solvation -82.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds