Wall clock time and date at job start Tue Mar 31 2020 14:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35556 * 117.00422 * 2 1 4 4 C 1.40129 * 120.30513 * 0.02562 * 3 2 1 5 5 N 1.30757 * 121.77710 * 179.97438 * 4 3 2 6 6 C 1.33675 * 121.99360 * 0.05603 * 5 4 3 7 7 C 1.40669 * 120.85471 * 179.97438 * 6 5 4 8 8 C 1.36107 * 119.76724 * 180.22570 * 7 6 5 9 9 C 1.39292 * 121.03203 * 359.45397 * 8 7 6 10 10 C 1.36295 * 120.80592 * 0.56962 * 9 8 7 11 11 C 1.40049 * 119.65064 * 359.71479 * 10 9 8 12 12 C 1.39518 * 120.30871 * 180.02562 * 3 2 1 13 13 C 1.47463 * 121.14595 * 0.03943 * 12 3 2 14 14 O 1.21599 * 119.99644 * 270.29031 * 13 12 3 15 15 N 1.34774 * 120.00078 * 90.28287 * 13 12 3 16 16 C 1.46497 * 119.99809 * 185.10813 * 15 13 12 17 17 C 1.53004 * 109.46652 * 184.34440 * 16 15 13 18 18 C 1.50698 * 115.55058 * 64.93892 * 17 16 15 19 19 H 1.08006 * 119.99947 * 266.97246 * 18 17 16 20 20 C 1.37877 * 120.00131 * 86.97263 * 18 17 16 21 21 N 1.31516 * 119.99742 * 180.95413 * 20 18 17 22 22 Si 1.86800 * 120.00115 * 0.95102 * 20 18 17 23 23 H 1.48493 * 109.47097 * 84.93173 * 22 20 18 24 24 H 1.48502 * 109.47183 * 204.92798 * 22 20 18 25 25 H 1.48500 * 109.47264 * 324.92935 * 22 20 18 26 26 C 1.53003 * 117.50030 * 279.26140 * 17 16 15 27 27 C 1.53005 * 117.49661 * 210.60329 * 17 16 15 28 28 H 1.08998 * 109.47588 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47265 * 300.00436 * 1 2 3 30 30 H 1.09000 * 109.47346 * 60.00224 * 1 2 3 31 31 H 1.08000 * 119.10895 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.11641 * 359.94594 * 7 6 5 33 33 H 1.07997 * 119.48295 * 179.72161 * 8 7 6 34 34 H 1.07998 * 119.59945 * 180.28807 * 9 8 7 35 35 H 1.07999 * 120.17626 * 179.69171 * 10 9 8 36 36 H 0.96996 * 119.99733 * 5.11256 * 15 13 12 37 37 H 1.09000 * 109.47472 * 304.34614 * 16 15 13 38 38 H 1.08998 * 109.47011 * 64.35130 * 16 15 13 39 39 H 0.97005 * 119.99984 * 179.97438 * 21 20 18 40 40 H 1.09000 * 117.49719 * 0.02562 * 26 17 16 41 41 H 1.09000 * 117.49383 * 145.02291 * 26 17 16 42 42 H 1.08999 * 117.49722 * 214.98177 * 27 17 16 43 43 H 1.08995 * 117.49819 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 6 1.2876 2.3871 0.0005 5 7 1.8512 3.5670 0.0011 6 6 3.1795 3.7174 0.0000 7 6 3.7605 4.9985 0.0000 8 6 5.1155 5.1260 -0.0057 9 6 5.9423 4.0050 -0.0003 10 6 5.4144 2.7484 -0.0007 11 6 4.0240 2.5810 -0.0006 12 6 3.4373 1.2882 -0.0005 13 6 4.2715 0.0722 -0.0020 14 8 4.6115 -0.4331 1.0505 15 7 4.6570 -0.4792 -1.1698 16 6 5.3901 -1.7475 -1.1743 17 6 5.7992 -2.0950 -2.6071 18 6 6.7800 -1.1489 -3.2505 19 1 6.4216 -0.3243 -3.8491 20 6 8.1347 -1.3358 -3.0751 21 7 8.9900 -0.4992 -3.6212 22 14 8.7553 -2.7772 -2.0619 23 1 8.8427 -3.9850 -2.9212 24 1 10.0999 -2.4579 -1.5186 25 1 7.8165 -3.0345 -0.9404 26 6 4.7420 -2.7370 -3.5077 27 6 5.9041 -3.5771 -2.9721 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2098 2.3196 0.0014 32 1 3.1335 5.8778 0.0001 33 1 5.5567 6.1118 -0.0102 34 1 7.0146 4.1330 -0.0004 35 1 6.0649 1.8863 -0.0015 36 1 4.4490 -0.0362 -2.0073 37 1 6.2817 -1.6541 -0.5543 38 1 4.7524 -2.5372 -0.7769 39 1 9.9431 -0.6304 -3.4975 40 1 3.7549 -2.9114 -3.0796 41 1 4.7561 -2.4752 -4.5657 42 1 6.6822 -3.8678 -3.6779 43 1 5.6821 -4.3046 -2.1914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338465546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:14 Heat of formation + Delta-G solvation = 13.300489 kcal Electronic energy + Delta-G solvation = -27570.238927 eV Core-core repulsion = 23774.866865 eV Total energy + Delta-G solvation = -3795.372062 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.27269 -39.12607 -38.95305 -37.05078 -36.57693 -33.61076 -33.11029 -32.14488 -30.39784 -30.00452 -27.56095 -27.00905 -25.53894 -24.43892 -23.29042 -22.57666 -21.75210 -20.06047 -19.33024 -18.76838 -18.13793 -17.71418 -16.62027 -16.35161 -16.04638 -15.47356 -15.19776 -14.95929 -14.93804 -14.50768 -14.22858 -14.17710 -13.90471 -13.74499 -13.36923 -12.94744 -12.76330 -12.44708 -12.29683 -12.13429 -12.03508 -11.68680 -11.54166 -11.45405 -11.19187 -10.81721 -10.51320 -10.28454 -10.15159 -10.01718 -9.70274 -9.37613 -9.21232 -8.69173 -8.65189 -8.59573 -8.36271 -8.04689 -6.17499 -4.22294 0.19115 0.73961 1.84831 2.79169 2.88691 2.93735 3.27231 3.37360 3.41377 3.56017 3.99654 4.09108 4.33724 4.37999 4.64001 4.68510 4.80286 4.89553 4.93045 4.93426 5.08340 5.10291 5.19300 5.26009 5.35063 5.43165 5.65614 5.67038 5.82379 5.97466 5.98940 6.03734 6.19838 6.21584 6.36738 6.40012 6.46837 6.47212 6.67415 6.73825 6.95170 6.97778 7.02833 7.06517 7.65171 7.65724 8.04537 8.39122 8.62162 8.82601 9.45347 10.93656 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.004560 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.778795 B = 6139.382692 C = 7690.203986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.299 6.299 3 C 0.103 3.897 4 C 0.067 3.933 5 N -0.432 5.432 6 C 0.094 3.906 7 C -0.084 4.084 8 C -0.109 4.109 9 C -0.097 4.097 10 C -0.097 4.097 11 C -0.034 4.034 12 C -0.104 4.104 13 C 0.568 3.432 14 O -0.540 6.540 15 N -0.687 5.687 16 C 0.155 3.845 17 C -0.017 4.017 18 C -0.490 4.490 19 H 0.078 0.922 20 C 0.081 3.919 21 N -0.894 5.894 22 Si 0.879 3.121 23 H -0.276 1.276 24 H -0.294 1.294 25 H -0.259 1.259 26 C -0.178 4.178 27 C -0.193 4.193 28 H 0.105 0.895 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.167 0.833 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.405 0.595 37 H 0.069 0.931 38 H 0.045 0.955 39 H 0.266 0.734 40 H 0.073 0.927 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.831 7.007 6.170 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.210 6.210 3 C 0.054 3.946 4 C -0.108 4.108 5 N -0.141 5.141 6 C -0.027 4.027 7 C -0.102 4.102 8 C -0.129 4.129 9 C -0.115 4.115 10 C -0.116 4.116 11 C -0.037 4.037 12 C -0.116 4.116 13 C 0.352 3.648 14 O -0.418 6.418 15 N -0.335 5.335 16 C 0.032 3.968 17 C -0.018 4.018 18 C -0.527 4.527 19 H 0.096 0.904 20 C -0.122 4.122 21 N -0.530 5.530 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.221 1.221 25 H -0.184 1.184 26 C -0.215 4.215 27 C -0.231 4.231 28 H 0.124 0.876 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.184 0.816 32 H 0.154 0.846 33 H 0.149 0.851 34 H 0.151 0.849 35 H 0.154 0.846 36 H 0.240 0.760 37 H 0.087 0.913 38 H 0.063 0.937 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.731 7.263 6.879 17.806 hybrid contribution 0.621 -1.287 0.040 1.430 sum -14.110 5.976 6.918 16.812 Atomic orbital electron populations 1.23194 0.77740 1.04775 1.01572 1.86124 1.21787 1.25390 1.87687 1.20026 0.91409 0.86198 0.97013 1.23111 1.00496 0.86573 1.00619 1.67588 1.11686 1.25491 1.09297 1.18689 0.88244 0.93363 1.02377 1.20732 0.94911 0.95108 0.99490 1.20914 0.93222 0.99210 0.99510 1.21036 1.00751 0.91993 0.97711 1.21056 0.92981 0.98891 0.98649 1.18434 0.94960 0.90961 0.99332 1.19707 0.91090 0.94315 1.06463 1.17626 0.79767 0.82780 0.84657 1.90787 1.56454 1.63132 1.31472 1.45816 1.55445 1.24437 1.07846 1.21225 0.94731 0.83017 0.97857 1.19631 0.98625 0.92337 0.91248 1.20167 0.88987 1.12030 1.31517 0.90381 1.24954 0.96680 0.95942 0.94625 1.69884 1.02437 1.36690 1.44030 0.86884 0.77970 0.83002 0.81479 1.20206 1.22112 1.18372 1.22844 0.92579 1.06122 0.99957 1.22968 1.01707 0.94860 1.03559 0.87649 0.92243 0.92092 0.81612 0.84646 0.85092 0.84937 0.84633 0.76003 0.91283 0.93673 0.92464 0.90834 0.89379 0.89039 0.90710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 101.05 0.99 1.16 16 2 O -0.30 -4.04 9.99 -18.36 -0.18 -4.23 16 3 C 0.10 1.49 6.73 -38.40 -0.26 1.23 16 4 C 0.07 0.81 10.20 -17.30 -0.18 0.64 16 5 N -0.43 -5.96 10.28 -10.85 -0.11 -6.07 16 6 C 0.09 1.38 6.61 -84.87 -0.56 0.82 16 7 C -0.08 -1.01 9.98 -39.43 -0.39 -1.41 16 8 C -0.11 -1.21 9.94 -39.96 -0.40 -1.61 16 9 C -0.10 -1.26 9.96 -39.89 -0.40 -1.66 16 10 C -0.10 -1.54 9.42 -39.60 -0.37 -1.92 16 11 C -0.03 -0.56 5.76 -106.52 -0.61 -1.17 16 12 C -0.10 -1.77 5.70 -104.24 -0.59 -2.36 16 13 C 0.57 11.21 5.62 -12.50 -0.07 11.14 16 14 O -0.54 -12.38 17.09 5.28 0.09 -12.29 16 15 N -0.69 -13.46 5.45 -61.37 -0.33 -13.79 16 16 C 0.15 3.30 5.23 -4.04 -0.02 3.28 16 17 C -0.02 -0.38 0.85 -155.65 -0.13 -0.51 16 18 C -0.49 -12.77 9.29 -34.44 -0.32 -13.09 16 19 H 0.08 2.21 8.06 -52.48 -0.42 1.78 16 20 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 21 N -0.89 -26.11 13.96 55.43 0.77 -25.33 16 22 Si 0.88 21.29 24.75 -169.99 -4.21 17.08 16 23 H -0.28 -6.51 7.01 56.52 0.40 -6.11 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 H -0.26 -6.09 6.00 56.52 0.34 -5.75 16 26 C -0.18 -3.39 9.96 -26.69 -0.27 -3.65 16 27 C -0.19 -3.93 7.59 -26.69 -0.20 -4.13 16 28 H 0.11 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 30 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 31 H 0.17 1.36 6.27 -52.49 -0.33 1.03 16 32 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 34 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 35 H 0.14 2.38 7.23 -52.49 -0.38 2.00 16 36 H 0.41 7.56 8.43 -40.82 -0.34 7.22 16 37 H 0.07 1.62 6.76 -51.93 -0.35 1.27 16 38 H 0.05 0.92 8.09 -51.93 -0.42 0.50 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 41 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 42 H 0.09 1.96 7.06 -51.93 -0.37 1.59 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 362.03 15.07 5.46 5.46 Total: -1.00 -32.83 362.03 -7.97 -40.80 By element: Atomic # 1 Polarization: 15.07 SS G_CDS: -5.57 Total: 9.49 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: -3.88 Total: -11.11 kcal Atomic # 7 Polarization: -45.52 SS G_CDS: 0.33 Total: -45.20 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -0.09 Total: -16.52 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.21 Total: 17.08 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.83 -7.97 -40.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338465546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.100 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds