Wall clock time and date at job start Tue Mar 31 2020 14:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35556 * 117.00422 * 2 1 4 4 C 1.40129 * 120.30513 * 0.02562 * 3 2 1 5 5 N 1.30757 * 121.77710 * 179.97438 * 4 3 2 6 6 C 1.33675 * 121.99360 * 0.05603 * 5 4 3 7 7 C 1.40669 * 120.85471 * 179.97438 * 6 5 4 8 8 C 1.36107 * 119.76724 * 180.22570 * 7 6 5 9 9 C 1.39292 * 121.03203 * 359.45397 * 8 7 6 10 10 C 1.36295 * 120.80592 * 0.56962 * 9 8 7 11 11 C 1.40049 * 119.65064 * 359.71479 * 10 9 8 12 12 C 1.39518 * 120.30871 * 180.02562 * 3 2 1 13 13 C 1.47463 * 121.14595 * 0.03943 * 12 3 2 14 14 O 1.21599 * 119.99644 * 270.29031 * 13 12 3 15 15 N 1.34774 * 120.00078 * 90.28287 * 13 12 3 16 16 C 1.46497 * 119.99809 * 185.10813 * 15 13 12 17 17 C 1.53004 * 109.46652 * 184.34440 * 16 15 13 18 18 C 1.50698 * 115.55058 * 64.93892 * 17 16 15 19 19 H 1.08006 * 119.99947 * 266.97246 * 18 17 16 20 20 C 1.37877 * 120.00131 * 86.97263 * 18 17 16 21 21 N 1.31516 * 119.99742 * 180.95413 * 20 18 17 22 22 Si 1.86800 * 120.00115 * 0.95102 * 20 18 17 23 23 H 1.48493 * 109.47097 * 84.93173 * 22 20 18 24 24 H 1.48502 * 109.47183 * 204.92798 * 22 20 18 25 25 H 1.48500 * 109.47264 * 324.92935 * 22 20 18 26 26 C 1.53003 * 117.50030 * 279.26140 * 17 16 15 27 27 C 1.53005 * 117.49661 * 210.60329 * 17 16 15 28 28 H 1.08998 * 109.47588 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47265 * 300.00436 * 1 2 3 30 30 H 1.09000 * 109.47346 * 60.00224 * 1 2 3 31 31 H 1.08000 * 119.10895 * 0.02562 * 4 3 2 32 32 H 1.07994 * 120.11641 * 359.94594 * 7 6 5 33 33 H 1.07997 * 119.48295 * 179.72161 * 8 7 6 34 34 H 1.07998 * 119.59945 * 180.28807 * 9 8 7 35 35 H 1.07999 * 120.17626 * 179.69171 * 10 9 8 36 36 H 0.96996 * 119.99733 * 5.11256 * 15 13 12 37 37 H 1.09000 * 109.47472 * 304.34614 * 16 15 13 38 38 H 1.08998 * 109.47011 * 64.35130 * 16 15 13 39 39 H 0.97005 * 119.99984 * 179.97438 * 21 20 18 40 40 H 1.09000 * 117.49719 * 0.02562 * 26 17 16 41 41 H 1.09000 * 117.49383 * 145.02291 * 26 17 16 42 42 H 1.08999 * 117.49722 * 214.98177 * 27 17 16 43 43 H 1.08995 * 117.49819 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0445 1.2078 0.0000 4 6 1.2876 2.3871 0.0005 5 7 1.8512 3.5670 0.0011 6 6 3.1795 3.7174 0.0000 7 6 3.7605 4.9985 0.0000 8 6 5.1155 5.1260 -0.0057 9 6 5.9423 4.0050 -0.0003 10 6 5.4144 2.7484 -0.0007 11 6 4.0240 2.5810 -0.0006 12 6 3.4373 1.2882 -0.0005 13 6 4.2715 0.0722 -0.0020 14 8 4.6115 -0.4331 1.0505 15 7 4.6570 -0.4792 -1.1698 16 6 5.3901 -1.7475 -1.1743 17 6 5.7992 -2.0950 -2.6071 18 6 6.7800 -1.1489 -3.2505 19 1 6.4216 -0.3243 -3.8491 20 6 8.1347 -1.3358 -3.0751 21 7 8.9900 -0.4992 -3.6212 22 14 8.7553 -2.7772 -2.0619 23 1 8.8427 -3.9850 -2.9212 24 1 10.0999 -2.4579 -1.5186 25 1 7.8165 -3.0345 -0.9404 26 6 4.7420 -2.7370 -3.5077 27 6 5.9041 -3.5771 -2.9721 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 0.2098 2.3196 0.0014 32 1 3.1335 5.8778 0.0001 33 1 5.5567 6.1118 -0.0102 34 1 7.0146 4.1330 -0.0004 35 1 6.0649 1.8863 -0.0015 36 1 4.4490 -0.0362 -2.0073 37 1 6.2817 -1.6541 -0.5543 38 1 4.7524 -2.5372 -0.7769 39 1 9.9431 -0.6304 -3.4975 40 1 3.7549 -2.9114 -3.0796 41 1 4.7561 -2.4752 -4.5657 42 1 6.6822 -3.8678 -3.6779 43 1 5.6821 -4.3046 -2.1914 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338465546.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:43:13 Heat of formation + Delta-G solvation = -9.706146 kcal Electronic energy + Delta-G solvation = -27571.236570 eV Core-core repulsion = 23774.866865 eV Total energy + Delta-G solvation = -3796.369705 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.36747 -40.50190 -40.08473 -38.75149 -37.57169 -35.17726 -34.36444 -34.18741 -31.43442 -30.99557 -28.73878 -28.22061 -27.41716 -25.69130 -24.31195 -23.77003 -23.34568 -21.50328 -21.07200 -19.75336 -19.32754 -18.94775 -18.31962 -17.62338 -17.21097 -16.89962 -16.73968 -16.38161 -16.03366 -15.81350 -15.55644 -15.18129 -15.12812 -14.89112 -14.82312 -14.61500 -14.44657 -14.14620 -13.73327 -13.12363 -13.03116 -12.97915 -12.69213 -12.63959 -12.48103 -12.40294 -12.21128 -12.03188 -11.72063 -11.50798 -11.09131 -11.02077 -10.70747 -10.65958 -10.37793 -10.04017 -9.67411 -9.11249 -8.31536 -6.38093 -0.88598 -0.29024 0.75082 1.31670 1.37131 1.38684 1.46913 1.78185 2.04759 2.10900 2.34303 2.93942 3.02664 3.13156 3.18604 3.32838 3.50960 3.72514 3.81013 3.95593 4.04513 4.11786 4.27204 4.31515 4.36869 4.37634 4.38442 4.40281 4.45759 4.64162 4.74662 4.76303 4.83994 4.87142 4.94906 5.05607 5.21331 5.25041 5.34001 5.38909 5.43988 5.46942 5.66814 5.77351 6.06591 6.25812 6.46982 6.61020 6.69756 7.06613 7.32214 8.83042 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012177 B = 0.004560 C = 0.003640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.778795 B = 6139.382692 C = 7690.203986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.007 3.993 2 O -0.323 6.323 3 C 0.116 3.884 4 C 0.076 3.924 5 N -0.430 5.430 6 C 0.075 3.925 7 C -0.077 4.077 8 C -0.104 4.104 9 C -0.088 4.088 10 C -0.138 4.138 11 C -0.047 4.047 12 C -0.148 4.148 13 C 0.574 3.426 14 O -0.582 6.582 15 N -0.685 5.685 16 C 0.164 3.836 17 C -0.044 4.044 18 C -0.479 4.479 19 H 0.042 0.958 20 C 0.029 3.971 21 N -0.941 5.941 22 Si 0.929 3.071 23 H -0.259 1.259 24 H -0.302 1.302 25 H -0.249 1.249 26 C -0.151 4.151 27 C -0.189 4.189 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.083 0.917 31 H 0.212 0.788 32 H 0.166 0.834 33 H 0.172 0.828 34 H 0.147 0.853 35 H 0.101 0.899 36 H 0.408 0.592 37 H 0.038 0.962 38 H 0.061 0.939 39 H 0.265 0.735 40 H 0.103 0.897 41 H 0.086 0.914 42 H 0.081 0.919 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.873 7.469 6.576 20.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 O -0.234 6.234 3 C 0.067 3.933 4 C -0.100 4.100 5 N -0.138 5.138 6 C -0.046 4.046 7 C -0.095 4.095 8 C -0.123 4.123 9 C -0.106 4.106 10 C -0.157 4.157 11 C -0.050 4.050 12 C -0.160 4.160 13 C 0.360 3.640 14 O -0.463 6.463 15 N -0.333 5.333 16 C 0.040 3.960 17 C -0.045 4.045 18 C -0.516 4.516 19 H 0.060 0.940 20 C -0.169 4.169 21 N -0.581 5.581 22 Si 0.754 3.246 23 H -0.184 1.184 24 H -0.230 1.230 25 H -0.173 1.173 26 C -0.188 4.188 27 C -0.227 4.227 28 H 0.139 0.861 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.229 0.771 32 H 0.183 0.817 33 H 0.190 0.810 34 H 0.165 0.835 35 H 0.119 0.881 36 H 0.243 0.757 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.105 0.895 42 H 0.099 0.901 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.802 7.716 7.265 20.718 hybrid contribution 1.421 -1.362 -0.122 1.972 sum -16.382 6.353 7.143 18.967 Atomic orbital electron populations 1.23642 0.74651 1.06637 1.03680 1.86105 1.25029 1.25208 1.87093 1.20167 0.90588 0.87481 0.95110 1.23754 1.02196 0.85140 0.98883 1.67683 1.11089 1.26022 1.09023 1.19016 0.88589 0.93755 1.03191 1.21146 0.95625 0.94986 0.97727 1.21296 0.92830 1.00071 0.98143 1.21342 1.01975 0.91608 0.95674 1.20926 0.93096 0.99117 1.02549 1.18535 0.95122 0.91390 0.99931 1.19580 0.92232 0.93332 1.10854 1.18023 0.79073 0.83142 0.83730 1.90734 1.58141 1.64700 1.32713 1.45799 1.55162 1.24135 1.08193 1.20996 0.94032 0.84188 0.96783 1.19451 1.00087 0.92979 0.91955 1.20299 0.89763 1.11487 1.30087 0.93974 1.25678 0.97123 0.98297 0.95841 1.70013 1.02656 1.38909 1.46473 0.86064 0.77088 0.80766 0.80639 1.18408 1.22971 1.17260 1.22876 0.93229 1.03290 0.99366 1.23034 1.01979 0.93771 1.03877 0.86135 0.90184 0.89814 0.77121 0.81687 0.81033 0.83527 0.88109 0.75684 0.94316 0.92109 0.92634 0.87865 0.89498 0.90058 0.88177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.09 9.81 113.37 1.11 1.20 16 2 O -0.32 -8.25 9.99 -88.62 -0.89 -9.13 16 3 C 0.12 3.26 6.73 23.04 0.15 3.42 16 4 C 0.08 1.65 10.20 85.31 0.87 2.52 16 5 N -0.43 -10.85 10.28 -188.23 -1.93 -12.78 16 6 C 0.07 2.11 6.61 40.28 0.27 2.37 16 7 C -0.08 -1.67 9.98 22.37 0.22 -1.45 16 8 C -0.10 -2.09 9.94 22.03 0.22 -1.87 16 9 C -0.09 -2.31 9.96 22.07 0.22 -2.09 16 10 C -0.14 -4.71 9.42 22.26 0.21 -4.50 16 11 C -0.05 -1.59 5.76 -21.09 -0.12 -1.71 16 12 C -0.15 -5.23 5.70 -19.61 -0.11 -5.34 16 13 C 0.57 23.84 5.62 86.67 0.49 24.33 16 14 O -0.58 -28.14 17.09 -4.03 -0.07 -28.20 16 15 N -0.69 -27.94 5.45 -466.34 -2.54 -30.48 16 16 C 0.16 7.07 5.23 86.38 0.45 7.52 16 17 C -0.04 -1.91 0.85 -52.92 -0.04 -1.95 16 18 C -0.48 -25.84 9.29 25.60 0.24 -25.60 16 19 H 0.04 2.52 8.06 -2.91 -0.02 2.49 16 20 C 0.03 1.64 5.47 84.65 0.46 2.11 16 21 N -0.94 -57.42 13.96 21.45 0.30 -57.12 16 22 Si 0.93 44.61 24.75 68.60 1.70 46.31 16 23 H -0.26 -11.66 7.01 99.48 0.70 -10.97 16 24 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 25 H -0.25 -11.44 6.00 99.48 0.60 -10.85 16 26 C -0.15 -5.44 9.96 30.62 0.30 -5.13 16 27 C -0.19 -7.31 7.59 30.62 0.23 -7.07 16 28 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.08 0.67 7.66 -2.39 -0.02 0.65 16 30 H 0.08 0.67 7.67 -2.39 -0.02 0.65 16 31 H 0.21 2.48 6.27 -2.91 -0.02 2.46 16 32 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.17 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.15 3.27 8.06 -2.91 -0.02 3.25 16 35 H 0.10 4.02 7.23 -2.91 -0.02 4.00 16 36 H 0.41 15.98 8.43 -92.71 -0.78 15.20 16 37 H 0.04 1.89 6.76 -2.39 -0.02 1.87 16 38 H 0.06 2.42 8.09 -2.39 -0.02 2.40 16 39 H 0.26 15.34 8.31 -92.70 -0.77 14.57 16 40 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 41 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 42 H 0.08 3.33 7.06 -2.39 -0.02 3.31 16 43 H 0.10 3.39 8.14 -2.39 -0.02 3.37 16 Total: -1.00 -76.30 362.03 1.89 -74.41 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.15 Total: 30.26 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: 5.17 Total: -13.26 kcal Atomic # 7 Polarization: -96.21 SS G_CDS: -4.18 Total: -100.38 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.95 Total: -37.34 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.70 Total: 46.31 kcal Total: -76.30 1.89 -74.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338465546.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.706 kcal (2) G-P(sol) polarization free energy of solvation -76.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds