Wall clock time and date at job start Tue Mar 31 2020 14:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00193 * 2 1 4 4 C 1.52995 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46841 * 180.02562 * 4 3 2 6 6 C 1.38854 * 120.75117 * 269.97101 * 5 4 3 7 7 C 1.38070 * 119.31601 * 180.02562 * 6 5 4 8 8 N 1.31930 * 120.85508 * 359.72955 * 7 6 5 9 9 C 1.32371 * 121.63059 * 0.56596 * 8 7 6 10 10 N 1.39287 * 119.70019 * 179.71293 * 9 8 7 11 11 C 1.34777 * 120.00043 * 354.11763 * 10 9 8 12 12 O 1.21592 * 119.99565 * 5.76155 * 11 10 9 13 13 C 1.47577 * 120.00388 * 185.75526 * 11 10 9 14 14 C 1.40041 * 119.89484 * 359.73268 * 13 11 10 15 15 C 1.36308 * 120.10340 * 179.71414 * 14 13 11 16 16 C 1.40899 * 119.89155 * 0.57793 * 15 14 13 17 17 C 1.41092 * 120.09808 * 179.67138 * 16 15 14 18 18 H 1.08000 * 120.00317 * 213.74582 * 17 16 15 19 19 C 1.40235 * 120.00211 * 33.75371 * 17 16 15 20 20 N 1.30649 * 119.99734 * 358.25242 * 19 17 16 21 21 Si 1.86796 * 120.00451 * 178.25615 * 19 17 16 22 22 H 1.48501 * 109.46878 * 59.99645 * 21 19 17 23 23 H 1.48498 * 109.47615 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46940 * 299.99857 * 21 19 17 25 25 C 1.40888 * 119.79899 * 359.69561 * 16 15 14 26 26 C 1.36302 * 119.89515 * 0.02562 * 25 16 15 27 27 C 1.38344 * 120.75462 * 89.99792 * 5 4 3 28 28 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47345 * 300.00351 * 1 2 3 30 30 H 1.08995 * 109.47328 * 60.00211 * 1 2 3 31 31 H 1.08991 * 109.47203 * 59.99688 * 3 2 1 32 32 H 1.08995 * 109.46682 * 299.99814 * 3 2 1 33 33 H 1.08997 * 109.48075 * 60.00131 * 4 3 2 34 34 H 1.09000 * 109.47602 * 299.99552 * 4 3 2 35 35 H 1.07999 * 120.33729 * 0.02562 * 6 5 4 36 36 H 1.08005 * 119.57379 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00248 * 174.12764 * 10 9 8 38 38 H 1.08002 * 119.95196 * 359.97438 * 14 13 11 39 39 H 1.07998 * 120.05142 * 180.27391 * 15 14 13 40 40 H 0.97005 * 119.99742 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.05436 * 179.97438 * 25 16 15 42 42 H 1.08002 * 119.95278 * 179.97438 * 26 25 16 43 43 H 1.07999 * 120.45101 * 359.95938 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 0.0000 6 6 4.4372 3.2104 -1.1930 7 6 4.9991 4.4711 -1.1579 8 7 5.2582 5.0646 -0.0084 9 6 5.0026 4.4765 1.1496 10 7 5.2979 5.1378 2.3394 11 6 5.9486 6.3177 2.3111 12 8 6.1852 6.8560 1.2468 13 6 6.3738 6.9565 3.5717 14 6 6.0951 6.3374 4.7965 15 6 6.4910 6.9207 5.9631 16 6 7.1709 8.1545 5.9359 17 6 7.5766 8.7656 7.1412 18 1 7.5818 9.8422 7.2257 19 6 7.9732 7.9749 8.2294 20 7 7.9345 6.6722 8.1387 21 14 8.5566 8.7843 9.8086 22 1 7.4707 9.6343 10.3595 23 1 8.9154 7.7371 10.7984 24 1 9.7470 9.6251 9.5233 25 6 7.4440 8.7763 4.7015 26 6 7.0493 8.1828 3.5398 27 6 4.4365 3.2068 1.1892 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8568 0.6438 -0.8908 34 1 3.8574 0.6435 0.8891 35 1 4.2246 2.7340 -2.1386 36 1 5.2252 4.9799 -2.0833 37 1 5.0353 4.7491 3.1884 38 1 5.5693 5.3942 4.8166 39 1 6.2795 6.4404 6.9070 40 1 8.2085 6.1253 8.8916 41 1 7.9646 9.7223 4.6759 42 1 7.2578 8.6588 2.5930 43 1 4.2246 2.7313 2.1354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000341873141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:06 Heat of formation + Delta-G solvation = -23.070618 kcal Electronic energy + Delta-G solvation = -25551.836405 eV Core-core repulsion = 21754.887174 eV Total energy + Delta-G solvation = -3796.949232 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.61800 -38.94492 -38.18383 -37.15314 -34.79445 -34.06274 -33.81467 -30.72331 -29.97844 -29.52644 -29.41639 -26.78307 -26.04836 -24.18964 -23.35780 -22.56096 -21.25549 -20.85645 -19.52594 -17.88926 -17.52131 -16.93943 -16.57813 -16.22724 -15.98872 -15.55441 -15.37997 -15.33112 -14.77605 -14.48259 -14.06222 -13.95630 -13.47278 -13.34372 -13.21987 -12.85638 -12.72809 -12.34818 -12.21662 -12.10054 -11.88798 -11.59074 -11.54252 -11.50395 -11.26657 -11.01913 -10.70484 -10.39139 -10.08796 -10.02908 -9.65841 -9.60182 -9.57182 -9.43910 -8.64009 -8.09448 -7.79456 -7.48859 -6.93547 -4.68182 1.18179 1.27979 2.16544 2.93014 2.94180 2.95967 2.97067 3.25437 3.39511 3.69375 3.76562 4.09313 4.50037 4.57515 4.60104 4.75849 4.78513 4.98262 5.04399 5.06662 5.09104 5.14413 5.19885 5.30744 5.46756 5.54615 5.61600 5.72066 5.77271 5.92552 5.99830 6.24129 6.26197 6.46878 6.70854 6.76772 6.81323 6.89644 7.01044 7.09977 7.38678 7.47282 7.66648 7.81124 7.83787 8.03787 8.34195 8.37633 8.60917 8.69290 8.93814 9.95241 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.002202 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.986527 B =12711.036587 C =13955.564649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.067 3.933 4 C -0.077 4.077 5 C -0.015 4.015 6 C -0.216 4.216 7 C 0.136 3.864 8 N -0.477 5.477 9 C 0.380 3.620 10 N -0.665 5.665 11 C 0.560 3.440 12 O -0.504 6.504 13 C -0.274 4.274 14 C -0.070 4.070 15 C -0.165 4.165 16 C 0.127 3.873 17 C -0.445 4.445 18 H 0.083 0.917 19 C 0.069 3.931 20 N -0.790 5.790 21 Si 0.921 3.079 22 H -0.262 1.262 23 H -0.276 1.276 24 H -0.263 1.263 25 C -0.228 4.228 26 C -0.026 4.026 27 C -0.215 4.215 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.041 0.959 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.131 0.869 36 H 0.156 0.844 37 H 0.414 0.586 38 H 0.089 0.911 39 H 0.131 0.869 40 H 0.285 0.715 41 H 0.101 0.899 42 H 0.104 0.896 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.354 -11.591 -9.877 18.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.010 4.010 4 C -0.114 4.114 5 C -0.023 4.023 6 C -0.238 4.238 7 C -0.023 4.023 8 N -0.192 5.192 9 C 0.148 3.852 10 N -0.311 5.311 11 C 0.354 3.646 12 O -0.378 6.378 13 C -0.279 4.279 14 C -0.090 4.090 15 C -0.184 4.184 16 C 0.123 3.877 17 C -0.474 4.474 18 H 0.101 0.899 19 C -0.150 4.150 20 N -0.414 5.414 21 Si 0.745 3.255 22 H -0.187 1.187 23 H -0.201 1.201 24 H -0.187 1.187 25 C -0.248 4.248 26 C -0.045 4.045 27 C -0.238 4.238 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.104 0.896 34 H 0.103 0.897 35 H 0.148 0.852 36 H 0.173 0.827 37 H 0.252 0.748 38 H 0.107 0.893 39 H 0.149 0.851 40 H 0.096 0.904 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -9.586 -10.654 -10.373 17.691 hybrid contribution -0.366 -0.634 1.203 1.408 sum -9.953 -11.287 -9.170 17.622 Atomic orbital electron populations 1.22745 0.80779 1.02794 1.00152 1.87845 1.19907 1.28022 1.95495 1.22480 0.93063 0.84582 1.00854 1.20442 0.93177 0.93157 1.04669 1.19725 0.95097 0.94888 0.92607 1.21862 1.05981 0.97714 0.98246 1.22683 0.92419 0.91528 0.95671 1.67811 1.19161 1.35343 0.96847 1.18613 0.91291 0.88322 0.87004 1.43860 1.57692 1.23066 1.06486 1.18853 0.76413 0.78987 0.90354 1.90757 1.53509 1.61621 1.31868 1.18913 1.17578 1.00905 0.90496 1.20549 0.98551 0.97134 0.92718 1.21235 1.01465 0.98571 0.97170 1.17865 0.86194 0.91403 0.92198 1.19771 1.36974 0.94976 0.95679 0.89894 1.26075 0.93789 0.94772 1.00324 1.69664 1.34331 1.05284 1.32165 0.86140 0.80122 0.79634 0.79594 1.18676 1.20105 1.18728 1.20843 1.09013 1.02653 0.92247 1.20383 0.93897 0.92876 0.97388 1.21356 1.07634 0.95483 0.99371 0.89548 0.93933 0.94017 0.92862 0.92922 0.89622 0.89654 0.85153 0.82713 0.74765 0.89294 0.85112 0.90384 0.88111 0.87841 0.84842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.72 10.70 -35.23 -0.38 -4.10 16 3 C 0.07 0.57 5.92 37.15 0.22 0.79 16 4 C -0.08 -0.67 5.76 -27.89 -0.16 -0.83 16 5 C -0.01 -0.16 5.17 -104.35 -0.54 -0.70 16 6 C -0.22 -2.36 9.81 -39.42 -0.39 -2.74 16 7 C 0.14 1.83 11.17 -17.57 -0.20 1.64 16 8 N -0.48 -8.52 7.89 -12.38 -0.10 -8.62 16 9 C 0.38 6.26 7.42 -154.79 -1.15 5.12 16 10 N -0.67 -11.57 5.33 -12.36 -0.07 -11.64 16 11 C 0.56 12.00 7.72 -12.45 -0.10 11.90 16 12 O -0.50 -12.16 14.59 5.28 0.08 -12.08 16 13 C -0.27 -6.14 5.89 -104.74 -0.62 -6.76 16 14 C -0.07 -1.51 9.47 -39.60 -0.37 -1.88 16 15 C -0.17 -3.95 8.60 -39.27 -0.34 -4.29 16 16 C 0.13 3.17 5.55 -106.81 -0.59 2.57 16 17 C -0.45 -10.94 9.04 -37.75 -0.34 -11.28 16 18 H 0.08 1.94 7.85 -52.49 -0.41 1.53 16 19 C 0.07 1.60 5.41 -17.30 -0.09 1.51 16 20 N -0.79 -18.79 10.61 55.56 0.59 -18.20 16 21 Si 0.92 17.37 29.56 -169.99 -5.03 12.35 16 22 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 23 H -0.28 -5.08 7.11 56.52 0.40 -4.68 16 24 H -0.26 -4.96 7.11 56.52 0.40 -4.56 16 25 C -0.23 -5.41 9.73 -39.28 -0.38 -5.79 16 26 C -0.03 -0.61 9.52 -39.60 -0.38 -0.98 16 27 C -0.21 -2.71 9.64 -39.23 -0.38 -3.09 16 28 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.08 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 37 H 0.41 5.98 6.72 -40.82 -0.27 5.71 16 38 H 0.09 1.58 6.39 -52.49 -0.34 1.24 16 39 H 0.13 3.19 6.14 -52.49 -0.32 2.87 16 40 H 0.28 6.17 8.29 -40.82 -0.34 5.83 16 41 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 42 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 43 H 0.13 1.37 8.06 -52.49 -0.42 0.94 16 LS Contribution 368.99 15.07 5.56 5.56 Total: -1.00 -30.42 368.99 -9.55 -39.97 By element: Atomic # 1 Polarization: 15.78 SS G_CDS: -5.52 Total: 10.25 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -4.69 Total: -13.49 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: 0.43 Total: -38.46 kcal Atomic # 8 Polarization: -15.88 SS G_CDS: -0.30 Total: -16.18 kcal Atomic # 14 Polarization: 17.37 SS G_CDS: -5.03 Total: 12.35 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.42 -9.55 -39.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341873141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.903 kcal (2) G-P(sol) polarization free energy of solvation -30.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds