Wall clock time and date at job start Tue Mar 31 2020 14:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00193 * 2 1 4 4 C 1.52995 * 109.46999 * 180.02562 * 3 2 1 5 5 C 1.50701 * 109.46841 * 180.02562 * 4 3 2 6 6 C 1.38854 * 120.75117 * 269.97101 * 5 4 3 7 7 C 1.38070 * 119.31601 * 180.02562 * 6 5 4 8 8 N 1.31930 * 120.85508 * 359.72955 * 7 6 5 9 9 C 1.32371 * 121.63059 * 0.56596 * 8 7 6 10 10 N 1.39287 * 119.70019 * 179.71293 * 9 8 7 11 11 C 1.34777 * 120.00043 * 354.11763 * 10 9 8 12 12 O 1.21592 * 119.99565 * 5.76155 * 11 10 9 13 13 C 1.47577 * 120.00388 * 185.75526 * 11 10 9 14 14 C 1.40041 * 119.89484 * 359.73268 * 13 11 10 15 15 C 1.36308 * 120.10340 * 179.71414 * 14 13 11 16 16 C 1.40899 * 119.89155 * 0.57793 * 15 14 13 17 17 C 1.41092 * 120.09808 * 179.67138 * 16 15 14 18 18 H 1.08000 * 120.00317 * 213.74582 * 17 16 15 19 19 C 1.40235 * 120.00211 * 33.75371 * 17 16 15 20 20 N 1.30649 * 119.99734 * 358.25242 * 19 17 16 21 21 Si 1.86796 * 120.00451 * 178.25615 * 19 17 16 22 22 H 1.48501 * 109.46878 * 59.99645 * 21 19 17 23 23 H 1.48498 * 109.47615 * 179.97438 * 21 19 17 24 24 H 1.48504 * 109.46940 * 299.99857 * 21 19 17 25 25 C 1.40888 * 119.79899 * 359.69561 * 16 15 14 26 26 C 1.36302 * 119.89515 * 0.02562 * 25 16 15 27 27 C 1.38344 * 120.75462 * 89.99792 * 5 4 3 28 28 H 1.09004 * 109.47159 * 180.02562 * 1 2 3 29 29 H 1.08997 * 109.47345 * 300.00351 * 1 2 3 30 30 H 1.08995 * 109.47328 * 60.00211 * 1 2 3 31 31 H 1.08991 * 109.47203 * 59.99688 * 3 2 1 32 32 H 1.08995 * 109.46682 * 299.99814 * 3 2 1 33 33 H 1.08997 * 109.48075 * 60.00131 * 4 3 2 34 34 H 1.09000 * 109.47602 * 299.99552 * 4 3 2 35 35 H 1.07999 * 120.33729 * 0.02562 * 6 5 4 36 36 H 1.08005 * 119.57379 * 180.02562 * 7 6 5 37 37 H 0.96997 * 120.00248 * 174.12764 * 10 9 8 38 38 H 1.08002 * 119.95196 * 359.97438 * 14 13 11 39 39 H 1.07998 * 120.05142 * 180.27391 * 15 14 13 40 40 H 0.97005 * 119.99742 * 180.02562 * 20 19 17 41 41 H 1.08006 * 120.05436 * 179.97438 * 25 16 15 42 42 H 1.08002 * 119.95278 * 179.97438 * 26 25 16 43 43 H 1.07999 * 120.45101 * 359.95938 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1484 2.5613 0.0000 6 6 4.4372 3.2104 -1.1930 7 6 4.9991 4.4711 -1.1579 8 7 5.2582 5.0646 -0.0084 9 6 5.0026 4.4765 1.1496 10 7 5.2979 5.1378 2.3394 11 6 5.9486 6.3177 2.3111 12 8 6.1852 6.8560 1.2468 13 6 6.3738 6.9565 3.5717 14 6 6.0951 6.3374 4.7965 15 6 6.4910 6.9207 5.9631 16 6 7.1709 8.1545 5.9359 17 6 7.5766 8.7656 7.1412 18 1 7.5818 9.8422 7.2257 19 6 7.9732 7.9749 8.2294 20 7 7.9345 6.6722 8.1387 21 14 8.5566 8.7843 9.8086 22 1 7.4707 9.6343 10.3595 23 1 8.9154 7.7371 10.7984 24 1 9.7470 9.6251 9.5233 25 6 7.4440 8.7763 4.7015 26 6 7.0493 8.1828 3.5398 27 6 4.4365 3.2068 1.1892 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8463 -0.8900 33 1 3.8568 0.6438 -0.8908 34 1 3.8574 0.6435 0.8891 35 1 4.2246 2.7340 -2.1386 36 1 5.2252 4.9799 -2.0833 37 1 5.0353 4.7491 3.1884 38 1 5.5693 5.3942 4.8166 39 1 6.2795 6.4404 6.9070 40 1 8.2085 6.1253 8.8916 41 1 7.9646 9.7223 4.6759 42 1 7.2578 8.6588 2.5930 43 1 4.2246 2.7313 2.1354 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000341873141.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:05 Heat of formation + Delta-G solvation = -39.663182 kcal Electronic energy + Delta-G solvation = -25552.555913 eV Core-core repulsion = 21754.887174 eV Total energy + Delta-G solvation = -3797.668739 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.82052 -40.38687 -39.00939 -38.72413 -36.07631 -35.62945 -35.06843 -32.31723 -31.33691 -30.87209 -30.65960 -27.79420 -27.33839 -25.12034 -24.57023 -23.77675 -22.86287 -22.36472 -20.94154 -19.41675 -19.13113 -18.07770 -17.44930 -17.14923 -17.08085 -16.85892 -16.46910 -16.29592 -15.90770 -15.86950 -15.73957 -15.18716 -14.99233 -14.62873 -14.51455 -14.09381 -13.93464 -13.64460 -13.61303 -13.31558 -13.02914 -12.95451 -12.83179 -12.62951 -12.38381 -12.18121 -12.14475 -11.77423 -11.71515 -11.40481 -11.21971 -11.04248 -10.62874 -10.54811 -9.98435 -9.61881 -9.41783 -9.16901 -8.67377 -6.53310 0.04172 0.29153 0.52414 1.11306 1.40603 1.44999 1.52150 1.98523 2.10722 2.19142 2.69901 2.80744 3.01813 3.50876 3.63295 3.82244 3.89626 4.09620 4.15587 4.19606 4.25158 4.28209 4.39346 4.42307 4.48890 4.55054 4.56379 4.76913 4.83626 4.87993 4.90721 4.92696 5.03742 5.06390 5.11864 5.28586 5.31627 5.44739 5.58952 5.73604 5.85273 5.93059 5.99776 6.19603 6.22261 6.32638 6.54877 6.78707 6.86298 7.11821 7.44179 8.23824 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.002202 C = 0.002006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1554.986527 B =12711.036587 C =13955.564649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.067 3.933 4 C -0.071 4.071 5 C -0.012 4.012 6 C -0.193 4.193 7 C 0.115 3.885 8 N -0.527 5.527 9 C 0.342 3.658 10 N -0.657 5.657 11 C 0.563 3.437 12 O -0.539 6.539 13 C -0.280 4.280 14 C -0.059 4.059 15 C -0.184 4.184 16 C 0.098 3.902 17 C -0.477 4.477 18 H 0.084 0.916 19 C 0.031 3.969 20 N -0.815 5.815 21 Si 0.992 3.008 22 H -0.257 1.257 23 H -0.266 1.266 24 H -0.262 1.262 25 C -0.240 4.240 26 C -0.038 4.038 27 C -0.203 4.203 28 H 0.098 0.902 29 H 0.046 0.954 30 H 0.050 0.950 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.426 0.574 38 H 0.127 0.873 39 H 0.124 0.876 40 H 0.293 0.707 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.441 -13.835 -10.137 20.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C -0.010 4.010 4 C -0.108 4.108 5 C -0.020 4.020 6 C -0.214 4.214 7 C -0.042 4.042 8 N -0.243 5.243 9 C 0.112 3.888 10 N -0.304 5.304 11 C 0.356 3.644 12 O -0.416 6.416 13 C -0.285 4.285 14 C -0.078 4.078 15 C -0.204 4.204 16 C 0.095 3.905 17 C -0.505 4.505 18 H 0.102 0.898 19 C -0.185 4.185 20 N -0.440 5.440 21 Si 0.812 3.188 22 H -0.181 1.181 23 H -0.190 1.190 24 H -0.187 1.187 25 C -0.259 4.259 26 C -0.057 4.057 27 C -0.226 4.226 28 H 0.117 0.883 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.108 0.892 35 H 0.185 0.815 36 H 0.189 0.811 37 H 0.266 0.734 38 H 0.145 0.855 39 H 0.142 0.858 40 H 0.104 0.896 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -10.710 -12.949 -10.660 19.900 hybrid contribution -0.132 -0.090 1.079 1.091 sum -10.842 -13.039 -9.580 19.477 Atomic orbital electron populations 1.22922 0.79485 1.03888 1.00787 1.87808 1.21398 1.28397 1.95622 1.22470 0.92857 0.84493 1.01140 1.20422 0.93177 0.91515 1.05656 1.20032 0.94270 0.95729 0.91974 1.22239 1.02989 0.96289 0.99879 1.23068 0.93180 0.92906 0.95090 1.67632 1.20657 1.37585 0.98380 1.18829 0.93890 0.89810 0.86289 1.43504 1.57094 1.21897 1.07855 1.18666 0.76509 0.79981 0.89262 1.90730 1.55172 1.62972 1.32697 1.19176 1.16972 1.00713 0.91603 1.20820 0.97459 0.98090 0.91441 1.21259 1.02541 0.98848 0.97707 1.18222 0.86962 0.92384 0.92885 1.20026 1.38473 0.95378 0.96624 0.89798 1.26913 0.93313 0.95209 1.03066 1.69705 1.34492 1.06400 1.33383 0.85080 0.79485 0.78751 0.75441 1.18098 1.18983 1.18686 1.20968 1.09540 1.03142 0.92266 1.20525 0.94349 0.93598 0.97247 1.21590 1.05879 0.93840 1.01274 0.88347 0.93537 0.93144 0.93017 0.92289 0.88262 0.89159 0.81547 0.81083 0.73360 0.85480 0.85806 0.89558 0.87469 0.87773 0.82470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -6.68 10.70 -148.98 -1.59 -8.28 16 3 C 0.07 0.94 5.92 71.98 0.43 1.37 16 4 C -0.07 -0.97 5.76 29.85 0.17 -0.80 16 5 C -0.01 -0.22 5.17 -19.69 -0.10 -0.32 16 6 C -0.19 -3.61 9.81 22.38 0.22 -3.39 16 7 C 0.11 2.96 11.17 84.64 0.95 3.90 16 8 N -0.53 -18.79 7.89 -193.09 -1.52 -20.31 16 9 C 0.34 11.03 7.42 132.96 0.99 12.02 16 10 N -0.66 -22.56 5.33 -311.29 -1.66 -24.22 16 11 C 0.56 24.46 7.72 86.71 0.67 25.13 16 12 O -0.54 -26.76 14.59 -4.01 -0.06 -26.82 16 13 C -0.28 -12.74 5.89 -19.94 -0.12 -12.86 16 14 C -0.06 -2.54 9.47 22.26 0.21 -2.33 16 15 C -0.18 -8.98 8.60 22.47 0.19 -8.79 16 16 C 0.10 5.08 5.55 -21.28 -0.12 4.97 16 17 C -0.48 -24.01 9.04 23.46 0.21 -23.79 16 18 H 0.08 4.04 7.85 -2.91 -0.02 4.01 16 19 C 0.03 1.46 5.41 85.35 0.46 1.92 16 20 N -0.81 -39.02 10.61 21.87 0.23 -38.78 16 21 Si 0.99 35.29 29.56 68.60 2.03 37.32 16 22 H -0.26 -8.85 7.11 99.48 0.71 -8.14 16 23 H -0.27 -8.91 7.11 99.48 0.71 -8.20 16 24 H -0.26 -9.25 7.11 99.48 0.71 -8.55 16 25 C -0.24 -11.80 9.73 22.47 0.22 -11.58 16 26 C -0.04 -1.82 9.52 22.26 0.21 -1.61 16 27 C -0.20 -4.66 9.64 22.50 0.22 -4.45 16 28 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.10 1.15 8.10 -2.39 -0.02 1.13 16 34 H 0.09 1.20 8.10 -2.39 -0.02 1.18 16 35 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 36 H 0.17 3.55 8.06 -2.91 -0.02 3.53 16 37 H 0.43 11.78 6.72 -92.71 -0.62 11.16 16 38 H 0.13 4.33 6.39 -2.91 -0.02 4.31 16 39 H 0.12 6.16 6.14 -2.91 -0.02 6.14 16 40 H 0.29 12.63 8.29 -92.70 -0.77 11.86 16 41 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 42 H 0.10 4.87 7.63 -2.91 -0.02 4.85 16 43 H 0.16 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -68.20 368.99 3.90 -64.30 By element: Atomic # 1 Polarization: 35.46 SS G_CDS: 0.42 Total: 35.88 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: 6.05 Total: -19.09 kcal Atomic # 7 Polarization: -80.36 SS G_CDS: -2.95 Total: -83.31 kcal Atomic # 8 Polarization: -33.45 SS G_CDS: -1.65 Total: -35.10 kcal Atomic # 14 Polarization: 35.29 SS G_CDS: 2.03 Total: 37.32 kcal Total: -68.20 3.90 -64.30 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000341873141.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.641 kcal (2) G-P(sol) polarization free energy of solvation -68.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds