Wall clock time and date at job start Tue Mar 31 2020 14:12:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00154 * 2 1 4 4 N 1.34779 * 120.00353 * 354.59698 * 3 2 1 5 5 O 1.21591 * 119.99917 * 174.59861 * 3 2 1 6 6 C 1.40149 * 119.99888 * 180.02562 * 2 1 3 7 7 C 1.38836 * 120.01084 * 300.32961 * 6 2 1 8 8 C 1.38105 * 119.98549 * 180.02562 * 7 6 2 9 9 C 1.38718 * 120.01024 * 0.02562 * 8 7 6 10 10 O 1.35976 * 119.97972 * 179.97438 * 9 8 7 11 11 C 1.42898 * 116.99615 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47160 * 179.97438 * 11 10 9 13 13 C 1.38639 * 119.75367 * 269.72679 * 12 11 10 14 14 C 1.37612 * 120.24709 * 179.72328 * 13 12 11 15 15 C 1.40709 * 119.74868 * 0.56694 * 14 13 12 16 16 C 1.41395 * 120.24816 * 179.68657 * 15 14 13 17 17 H 1.07995 * 120.00341 * 209.92684 * 16 15 14 18 18 C 1.39947 * 119.99939 * 29.92070 * 16 15 14 19 19 N 1.30829 * 119.99999 * 11.12024 * 18 16 15 20 20 Si 1.86803 * 120.00118 * 191.12181 * 18 16 15 21 21 H 1.48508 * 109.47104 * 90.00193 * 20 18 16 22 22 H 1.48499 * 109.46956 * 209.99641 * 20 18 16 23 23 H 1.48492 * 109.47198 * 329.99812 * 20 18 16 24 24 C 1.40714 * 119.51251 * 359.70700 * 15 14 13 25 25 C 1.37616 * 119.74282 * 359.97438 * 24 15 14 26 26 C 1.38710 * 120.03091 * 0.23068 * 9 8 7 27 27 C 1.38097 * 120.01262 * 359.49105 * 26 9 8 28 28 H 1.08998 * 109.47377 * 270.00291 * 1 2 3 29 29 H 1.09005 * 109.46982 * 29.99787 * 1 2 3 30 30 H 1.08998 * 109.47490 * 149.99742 * 1 2 3 31 31 H 0.97000 * 119.99384 * 0.02562 * 4 3 2 32 32 H 0.97000 * 120.00236 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.01039 * 359.97438 * 7 6 2 34 34 H 1.07992 * 119.99400 * 179.97438 * 8 7 6 35 35 H 1.09008 * 109.47271 * 299.99762 * 11 10 9 36 36 H 1.09005 * 109.47482 * 59.99802 * 11 10 9 37 37 H 1.07998 * 119.86957 * 359.97349 * 13 12 11 38 38 H 1.08010 * 120.12584 * 180.28212 * 14 13 12 39 39 H 0.96999 * 119.99545 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.13224 * 179.97438 * 24 15 14 41 41 H 1.08004 * 119.87835 * 179.97438 * 25 24 15 42 42 H 1.08006 * 119.99253 * 179.74691 * 26 9 8 43 43 H 1.08000 * 120.00756 * 180.23203 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 7 1.4696 2.3318 -0.1099 5 8 3.3507 1.1694 0.0991 6 6 2.1657 -1.2137 -0.0005 7 6 1.9871 -2.1191 1.0367 8 6 2.6783 -3.3148 1.0359 9 6 3.5512 -3.6109 -0.0007 10 8 4.2318 -4.7881 -0.0006 11 6 5.1142 -5.0273 -1.0988 12 6 5.7760 -6.3703 -0.9282 13 6 6.9797 -6.4626 -0.2464 14 6 7.5900 -7.6846 -0.0797 15 6 6.9939 -8.8416 -0.6146 16 6 7.6152 -10.1017 -0.4553 17 1 7.4803 -10.8687 -1.2034 18 6 8.4051 -10.3548 0.6719 19 7 8.3965 -9.5185 1.6779 20 14 9.4717 -11.8869 0.7400 21 1 10.8117 -11.5826 0.1767 22 1 9.6163 -12.3270 2.1509 23 1 8.8353 -12.9688 -0.0533 24 6 5.7750 -8.7352 -1.3096 25 6 5.1792 -7.5037 -1.4586 26 6 3.7340 -2.7044 -1.0346 27 6 3.0392 -1.5110 -1.0379 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 0.5028 2.3299 -0.1886 32 1 1.9546 3.1719 -0.1095 33 1 1.3085 -1.8881 1.8445 34 1 2.5398 -4.0189 1.8429 35 1 4.5470 -5.0170 -2.0297 36 1 5.8762 -4.2484 -1.1291 37 1 7.4379 -5.5725 0.1588 38 1 8.5254 -7.7549 0.4557 39 1 8.9437 -9.6942 2.4593 40 1 5.3089 -9.6167 -1.7247 41 1 4.2439 -7.4196 -1.9920 42 1 4.4169 -2.9338 -1.8393 43 1 3.1788 -0.8069 -1.8449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342496720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:01 Heat of formation + Delta-G solvation = -13.902508 kcal Electronic energy + Delta-G solvation = -25621.735296 eV Core-core repulsion = 21825.183624 eV Total energy + Delta-G solvation = -3796.551672 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.81414 -39.57534 -37.85333 -37.02463 -35.34676 -33.88724 -33.58838 -31.18122 -30.67596 -29.37490 -29.01821 -27.31578 -26.64900 -24.09498 -23.05108 -22.24727 -21.06421 -20.38481 -19.91394 -18.75393 -17.94165 -17.41700 -17.33470 -16.40051 -16.06231 -15.50633 -15.30999 -15.06392 -14.60076 -14.34750 -14.14044 -13.82284 -13.52938 -13.38630 -13.32398 -13.20888 -12.86539 -12.53113 -12.28658 -12.11028 -11.99277 -11.66582 -11.23946 -11.13505 -10.83124 -10.79395 -10.53634 -10.49655 -10.29331 -10.02062 -9.66920 -9.42655 -9.30368 -9.25430 -8.96908 -7.76656 -7.53178 -7.37480 -6.76690 -4.44576 1.36519 1.42883 2.44405 2.57080 2.89903 3.01470 3.05290 3.07457 3.09493 3.70207 3.84885 3.91530 3.93559 4.61175 4.65025 4.85716 4.92335 4.96806 5.18872 5.30177 5.39174 5.56545 5.61431 5.64194 5.66098 5.85186 5.97502 6.03635 6.15721 6.26487 6.33622 6.47209 6.50053 6.54787 6.57597 6.88920 6.95943 7.03625 7.19471 7.29121 7.48090 7.55556 7.71183 7.83972 7.99776 8.01829 8.23258 8.32121 8.58086 8.83336 8.89624 10.17731 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.001912 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.392310 B =14638.211652 C =14749.293868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.581 5.581 3 C 0.705 3.295 4 N -0.867 5.867 5 O -0.576 6.576 6 C 0.101 3.899 7 C -0.083 4.083 8 C -0.148 4.148 9 C 0.143 3.857 10 O -0.305 6.305 11 C 0.125 3.875 12 C -0.227 4.227 13 C -0.079 4.079 14 C -0.162 4.162 15 C 0.118 3.882 16 C -0.461 4.461 17 H 0.079 0.921 18 C 0.072 3.928 19 N -0.796 5.796 20 Si 0.913 3.087 21 H -0.268 1.268 22 H -0.277 1.277 23 H -0.262 1.262 24 C -0.225 4.225 25 C -0.068 4.068 26 C -0.202 4.202 27 C -0.063 4.063 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.396 0.604 32 H 0.414 0.586 33 H 0.126 0.874 34 H 0.135 0.865 35 H 0.054 0.946 36 H 0.055 0.945 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.281 0.719 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.132 0.868 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.397 18.080 -2.751 23.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.314 5.314 3 C 0.405 3.595 4 N -0.437 5.437 5 O -0.452 6.452 6 C 0.010 3.990 7 C -0.103 4.103 8 C -0.167 4.167 9 C 0.096 3.904 10 O -0.219 6.219 11 C 0.052 3.948 12 C -0.228 4.228 13 C -0.098 4.098 14 C -0.181 4.181 15 C 0.115 3.885 16 C -0.490 4.490 17 H 0.097 0.903 18 C -0.145 4.145 19 N -0.421 5.421 20 Si 0.737 3.263 21 H -0.193 1.193 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.244 4.244 25 C -0.087 4.087 26 C -0.221 4.221 27 C -0.083 4.083 28 H 0.078 0.922 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.226 0.774 32 H 0.247 0.753 33 H 0.144 0.856 34 H 0.152 0.848 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.108 0.892 38 H 0.137 0.863 39 H 0.092 0.908 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.150 0.850 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -14.502 17.796 -2.304 23.072 hybrid contribution 0.104 -0.113 -0.009 0.154 sum -14.398 17.683 -2.313 22.920 Atomic orbital electron populations 1.21831 0.78979 1.03345 1.02170 1.44344 1.06176 1.03330 1.77573 1.15922 0.85263 0.80592 0.77720 1.43123 1.11197 1.07433 1.81925 1.91024 1.11786 1.85892 1.56504 1.17088 0.99505 0.86319 0.96124 1.20819 0.99639 0.93477 0.96349 1.20315 0.98952 0.98141 0.99319 1.19239 0.91410 0.86047 0.93682 1.86391 1.54859 1.32922 1.47699 1.21507 0.90204 0.96357 0.86773 1.18681 0.99137 0.92156 1.12839 1.20569 0.94941 0.96976 0.97277 1.21308 1.01224 0.90888 1.04686 1.17701 0.89390 0.93157 0.88207 1.19635 1.25296 0.98813 1.05286 0.90307 1.25938 0.95542 0.98246 0.94785 1.69800 1.32443 1.35343 1.04510 0.86237 0.80414 0.81373 0.78242 1.19287 1.20252 1.18623 1.21027 0.97840 0.95567 1.09995 1.20399 0.97189 0.92651 0.98442 1.21179 1.04698 0.95474 1.00793 1.20839 0.95189 0.95580 0.96684 0.92202 0.91265 0.90187 0.77423 0.75334 0.85585 0.84751 0.92829 0.92711 0.89227 0.86267 0.90776 0.88683 0.89264 0.84990 0.86186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.42 10.11 59.85 0.60 1.02 16 2 N -0.58 -5.82 2.97 -126.19 -0.37 -6.20 16 3 C 0.71 8.02 8.35 -86.92 -0.73 7.29 16 4 N -0.87 -5.33 8.76 27.63 0.24 -5.09 16 5 O -0.58 -9.48 16.66 5.29 0.09 -9.39 16 6 C 0.10 1.28 5.01 -83.61 -0.42 0.86 16 7 C -0.08 -1.02 9.70 -39.41 -0.38 -1.40 16 8 C -0.15 -2.10 9.98 -39.45 -0.39 -2.50 16 9 C 0.14 2.32 6.69 -39.23 -0.26 2.06 16 10 O -0.31 -5.80 10.12 -19.67 -0.20 -6.00 16 11 C 0.13 2.29 4.85 36.00 0.17 2.46 16 12 C -0.23 -5.01 5.53 -104.33 -0.58 -5.59 16 13 C -0.08 -1.87 9.67 -39.66 -0.38 -2.25 16 14 C -0.16 -4.21 8.65 -38.88 -0.34 -4.54 16 15 C 0.12 3.14 5.53 -106.83 -0.59 2.54 16 16 C -0.46 -12.12 9.06 -37.74 -0.34 -12.46 16 17 H 0.08 1.98 7.87 -52.49 -0.41 1.57 16 18 C 0.07 1.81 5.24 -17.34 -0.09 1.72 16 19 N -0.80 -20.65 10.94 55.55 0.61 -20.04 16 20 Si 0.91 18.61 29.57 -169.99 -5.03 13.58 16 21 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 22 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 C -0.22 -5.49 9.80 -38.87 -0.38 -5.87 16 25 C -0.07 -1.53 9.67 -39.66 -0.38 -1.92 16 26 C -0.20 -2.95 9.03 -39.46 -0.36 -3.31 16 27 C -0.06 -0.86 9.11 -39.41 -0.36 -1.22 16 28 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 29 H 0.07 0.17 6.16 -51.93 -0.32 -0.15 16 30 H 0.08 0.40 8.05 -51.93 -0.42 -0.01 16 31 H 0.40 1.14 6.47 -40.82 -0.26 0.87 16 32 H 0.41 2.10 8.93 -40.82 -0.36 1.74 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.13 1.78 8.06 -52.49 -0.42 1.36 16 35 H 0.05 0.87 7.61 -51.92 -0.40 0.47 16 36 H 0.05 0.93 7.59 -51.93 -0.39 0.54 16 37 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.12 3.19 6.33 -52.48 -0.33 2.86 16 39 H 0.28 6.65 8.30 -40.82 -0.34 6.31 16 40 H 0.09 2.17 8.06 -52.48 -0.42 1.75 16 41 H 0.09 1.76 8.06 -52.48 -0.42 1.33 16 42 H 0.13 1.78 6.29 -52.48 -0.33 1.45 16 43 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 366.40 15.07 5.52 5.52 Total: -1.00 -32.68 366.40 -9.67 -42.35 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -5.33 Total: 8.38 kcal Atomic # 6 Polarization: -17.90 SS G_CDS: -5.20 Total: -23.11 kcal Atomic # 7 Polarization: -31.80 SS G_CDS: 0.48 Total: -31.33 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.11 Total: -15.39 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.68 -9.67 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342496720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.447 kcal (2) G-P(sol) polarization free energy of solvation -32.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds