Wall clock time and date at job start Tue Mar 31 2020 14:12:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34771 * 120.00154 * 2 1 4 4 N 1.34779 * 120.00353 * 354.59698 * 3 2 1 5 5 O 1.21591 * 119.99917 * 174.59861 * 3 2 1 6 6 C 1.40149 * 119.99888 * 180.02562 * 2 1 3 7 7 C 1.38836 * 120.01084 * 300.32961 * 6 2 1 8 8 C 1.38105 * 119.98549 * 180.02562 * 7 6 2 9 9 C 1.38718 * 120.01024 * 0.02562 * 8 7 6 10 10 O 1.35976 * 119.97972 * 179.97438 * 9 8 7 11 11 C 1.42898 * 116.99615 * 180.02562 * 10 9 8 12 12 C 1.50698 * 109.47160 * 179.97438 * 11 10 9 13 13 C 1.38639 * 119.75367 * 269.72679 * 12 11 10 14 14 C 1.37612 * 120.24709 * 179.72328 * 13 12 11 15 15 C 1.40709 * 119.74868 * 0.56694 * 14 13 12 16 16 C 1.41395 * 120.24816 * 179.68657 * 15 14 13 17 17 H 1.07995 * 120.00341 * 209.92684 * 16 15 14 18 18 C 1.39947 * 119.99939 * 29.92070 * 16 15 14 19 19 N 1.30829 * 119.99999 * 11.12024 * 18 16 15 20 20 Si 1.86803 * 120.00118 * 191.12181 * 18 16 15 21 21 H 1.48508 * 109.47104 * 90.00193 * 20 18 16 22 22 H 1.48499 * 109.46956 * 209.99641 * 20 18 16 23 23 H 1.48492 * 109.47198 * 329.99812 * 20 18 16 24 24 C 1.40714 * 119.51251 * 359.70700 * 15 14 13 25 25 C 1.37616 * 119.74282 * 359.97438 * 24 15 14 26 26 C 1.38710 * 120.03091 * 0.23068 * 9 8 7 27 27 C 1.38097 * 120.01262 * 359.49105 * 26 9 8 28 28 H 1.08998 * 109.47377 * 270.00291 * 1 2 3 29 29 H 1.09005 * 109.46982 * 29.99787 * 1 2 3 30 30 H 1.08998 * 109.47490 * 149.99742 * 1 2 3 31 31 H 0.97000 * 119.99384 * 0.02562 * 4 3 2 32 32 H 0.97000 * 120.00236 * 179.97438 * 4 3 2 33 33 H 1.08003 * 120.01039 * 359.97438 * 7 6 2 34 34 H 1.07992 * 119.99400 * 179.97438 * 8 7 6 35 35 H 1.09008 * 109.47271 * 299.99762 * 11 10 9 36 36 H 1.09005 * 109.47482 * 59.99802 * 11 10 9 37 37 H 1.07998 * 119.86957 * 359.97349 * 13 12 11 38 38 H 1.08010 * 120.12584 * 180.28212 * 14 13 12 39 39 H 0.96999 * 119.99545 * 179.97438 * 19 18 16 40 40 H 1.08003 * 120.13224 * 179.97438 * 24 15 14 41 41 H 1.08004 * 119.87835 * 179.97438 * 25 24 15 42 42 H 1.08006 * 119.99253 * 179.74691 * 26 9 8 43 43 H 1.08000 * 120.00756 * 180.23203 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 7 1.4696 2.3318 -0.1099 5 8 3.3507 1.1694 0.0991 6 6 2.1657 -1.2137 -0.0005 7 6 1.9871 -2.1191 1.0367 8 6 2.6783 -3.3148 1.0359 9 6 3.5512 -3.6109 -0.0007 10 8 4.2318 -4.7881 -0.0006 11 6 5.1142 -5.0273 -1.0988 12 6 5.7760 -6.3703 -0.9282 13 6 6.9797 -6.4626 -0.2464 14 6 7.5900 -7.6846 -0.0797 15 6 6.9939 -8.8416 -0.6146 16 6 7.6152 -10.1017 -0.4553 17 1 7.4803 -10.8687 -1.2034 18 6 8.4051 -10.3548 0.6719 19 7 8.3965 -9.5185 1.6779 20 14 9.4717 -11.8869 0.7400 21 1 10.8117 -11.5826 0.1767 22 1 9.6163 -12.3270 2.1509 23 1 8.8353 -12.9688 -0.0533 24 6 5.7750 -8.7352 -1.3096 25 6 5.1792 -7.5037 -1.4586 26 6 3.7340 -2.7044 -1.0346 27 6 3.0392 -1.5110 -1.0379 28 1 -0.3634 0.0001 1.0276 29 1 -0.3633 0.8900 -0.5138 30 1 -0.3634 -0.8899 -0.5139 31 1 0.5028 2.3299 -0.1886 32 1 1.9546 3.1719 -0.1095 33 1 1.3085 -1.8881 1.8445 34 1 2.5398 -4.0189 1.8429 35 1 4.5470 -5.0170 -2.0297 36 1 5.8762 -4.2484 -1.1291 37 1 7.4379 -5.5725 0.1588 38 1 8.5254 -7.7549 0.4557 39 1 8.9437 -9.6942 2.4593 40 1 5.3089 -9.6167 -1.7247 41 1 4.2439 -7.4196 -1.9920 42 1 4.4169 -2.9338 -1.8393 43 1 3.1788 -0.8069 -1.8449 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342496720.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:12:00 Heat of formation + Delta-G solvation = -33.896968 kcal Electronic energy + Delta-G solvation = -25622.602321 eV Core-core repulsion = 21825.183624 eV Total energy + Delta-G solvation = -3797.418697 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72199 -40.75021 -39.47025 -38.33714 -36.29322 -35.62887 -34.41653 -32.63460 -32.01906 -31.24683 -30.07320 -28.74959 -27.52263 -25.73759 -24.06160 -23.43900 -22.94273 -21.77356 -21.14861 -19.50857 -19.25816 -19.10124 -18.21431 -17.52265 -17.16459 -16.84302 -16.68175 -16.34555 -15.81337 -15.66927 -15.37000 -15.16787 -15.03779 -14.52082 -14.40408 -14.11393 -13.97115 -13.86789 -13.61575 -13.51659 -13.46151 -13.09429 -12.85687 -12.73702 -12.53941 -12.19457 -11.95307 -11.80112 -11.48842 -11.44060 -11.28174 -11.10707 -10.74498 -10.14413 -10.01039 -9.43161 -9.28010 -8.84437 -8.62881 -6.41673 0.31450 0.34956 0.78240 1.09755 1.38081 1.46447 1.52085 1.71319 2.05078 2.20083 2.40582 2.72514 2.86864 3.31219 3.70550 3.81294 3.91399 4.12511 4.15323 4.20289 4.27131 4.40781 4.45760 4.50578 4.54892 4.56957 4.68411 4.83929 4.90247 4.99767 5.02448 5.13537 5.29697 5.31532 5.37253 5.39799 5.50869 5.66294 5.68725 5.86492 5.94828 6.03578 6.06394 6.13549 6.32978 6.54681 6.65221 6.85278 6.89984 6.97113 7.57175 8.34113 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.035871 B = 0.001912 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 780.392310 B =14638.211652 C =14749.293868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.581 5.581 3 C 0.698 3.302 4 N -0.841 5.841 5 O -0.635 6.635 6 C 0.105 3.895 7 C -0.077 4.077 8 C -0.154 4.154 9 C 0.114 3.886 10 O -0.331 6.331 11 C 0.131 3.869 12 C -0.220 4.220 13 C -0.087 4.087 14 C -0.185 4.185 15 C 0.085 3.915 16 C -0.497 4.497 17 H 0.079 0.921 18 C 0.029 3.971 19 N -0.832 5.832 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.269 1.269 23 H -0.257 1.257 24 C -0.238 4.238 25 C -0.070 4.070 26 C -0.203 4.203 27 C -0.075 4.075 28 H 0.077 0.923 29 H 0.100 0.900 30 H 0.083 0.917 31 H 0.415 0.585 32 H 0.422 0.578 33 H 0.155 0.845 34 H 0.139 0.861 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.104 0.896 38 H 0.101 0.899 39 H 0.288 0.712 40 H 0.104 0.896 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.700 19.710 -3.016 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.314 5.314 3 C 0.398 3.602 4 N -0.412 5.412 5 O -0.515 6.515 6 C 0.013 3.987 7 C -0.097 4.097 8 C -0.173 4.173 9 C 0.068 3.932 10 O -0.245 6.245 11 C 0.057 3.943 12 C -0.221 4.221 13 C -0.106 4.106 14 C -0.205 4.205 15 C 0.082 3.918 16 C -0.527 4.527 17 H 0.097 0.903 18 C -0.185 4.185 19 N -0.458 5.458 20 Si 0.809 3.191 21 H -0.186 1.186 22 H -0.194 1.194 23 H -0.180 1.180 24 C -0.258 4.258 25 C -0.088 4.088 26 C -0.223 4.223 27 C -0.094 4.094 28 H 0.095 0.905 29 H 0.118 0.882 30 H 0.102 0.898 31 H 0.248 0.752 32 H 0.255 0.745 33 H 0.173 0.827 34 H 0.157 0.843 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.122 0.878 41 H 0.139 0.861 42 H 0.157 0.843 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -16.897 19.477 -2.583 25.914 hybrid contribution 0.600 -0.350 0.054 0.696 sum -16.297 19.127 -2.529 25.256 Atomic orbital electron populations 1.22173 0.75814 1.05170 1.03896 1.44445 1.07915 1.02015 1.76986 1.16186 0.84725 0.81790 0.77510 1.42879 1.12163 1.06146 1.80015 1.90989 1.14492 1.86856 1.59212 1.17300 0.98733 0.87198 0.95481 1.21063 0.99409 0.92423 0.96797 1.20524 0.98760 0.99004 0.98986 1.19439 0.92749 0.85741 0.95302 1.86279 1.55635 1.34695 1.47889 1.21397 0.90869 0.94281 0.87755 1.19100 0.98335 0.94122 1.10521 1.20813 0.95707 0.96671 0.97360 1.21268 1.01261 0.92014 1.05946 1.18063 0.90616 0.93659 0.89413 1.19887 1.27319 0.99115 1.06334 0.90259 1.26833 0.96249 1.01540 0.93835 1.69872 1.33400 1.37359 1.05194 0.85112 0.78338 0.77150 0.78539 1.18629 1.19373 1.18029 1.21255 0.97495 0.96988 1.10037 1.20752 0.98086 0.91925 0.98066 1.21263 1.04839 0.95554 1.00614 1.20983 0.95616 0.95382 0.97467 0.90486 0.88205 0.89796 0.75185 0.74480 0.82697 0.84317 0.90454 0.91648 0.87779 0.88091 0.90190 0.87792 0.86091 0.84333 0.85814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.46 10.11 127.77 1.29 1.75 16 2 N -0.58 -10.07 2.97 -671.42 -1.99 -12.07 16 3 C 0.70 14.42 8.35 179.06 1.50 15.92 16 4 N -0.84 -7.85 8.76 -184.74 -1.62 -9.47 16 5 O -0.63 -20.44 16.66 -4.00 -0.07 -20.51 16 6 C 0.10 2.46 5.01 38.10 0.19 2.65 16 7 C -0.08 -1.73 9.70 22.38 0.22 -1.51 16 8 C -0.15 -4.19 9.98 22.35 0.22 -3.97 16 9 C 0.11 3.59 6.69 22.50 0.15 3.74 16 10 O -0.33 -12.35 10.12 -93.28 -0.94 -13.30 16 11 C 0.13 4.62 4.85 71.24 0.35 4.97 16 12 C -0.22 -9.62 5.53 -19.67 -0.11 -9.73 16 13 C -0.09 -4.20 9.67 22.22 0.21 -3.98 16 14 C -0.19 -10.07 8.65 22.73 0.20 -9.87 16 15 C 0.08 4.68 5.53 -21.29 -0.12 4.56 16 16 C -0.50 -27.16 9.06 23.46 0.21 -26.94 16 17 H 0.08 4.14 7.87 -2.91 -0.02 4.11 16 18 C 0.03 1.51 5.24 85.26 0.45 1.95 16 19 N -0.83 -44.80 10.94 21.83 0.24 -44.56 16 20 Si 0.99 38.81 29.57 68.60 2.03 40.83 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.03 16 24 C -0.24 -11.84 9.80 22.73 0.22 -11.62 16 25 C -0.07 -3.11 9.67 22.22 0.21 -2.89 16 26 C -0.20 -5.76 9.03 22.35 0.20 -5.56 16 27 C -0.07 -1.95 9.11 22.38 0.20 -1.75 16 28 H 0.08 0.30 8.14 -2.39 -0.02 0.28 16 29 H 0.10 0.03 6.16 -2.38 -0.01 0.02 16 30 H 0.08 0.54 8.05 -2.39 -0.02 0.52 16 31 H 0.41 0.72 6.47 -92.71 -0.60 0.12 16 32 H 0.42 3.20 8.93 -92.71 -0.83 2.37 16 33 H 0.16 2.49 8.06 -2.91 -0.02 2.47 16 34 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.08 2.35 7.61 -2.38 -0.02 2.33 16 36 H 0.07 2.15 7.59 -2.38 -0.02 2.13 16 37 H 0.10 4.58 8.06 -2.91 -0.02 4.56 16 38 H 0.10 5.74 6.33 -2.91 -0.02 5.72 16 39 H 0.29 14.03 8.30 -92.71 -0.77 13.26 16 40 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 41 H 0.12 4.52 8.06 -2.91 -0.02 4.50 16 42 H 0.14 3.60 6.29 -2.91 -0.02 3.58 16 43 H 0.12 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -74.49 366.40 2.88 -71.61 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: -0.37 Total: 29.74 kcal Atomic # 6 Polarization: -47.88 SS G_CDS: 5.60 Total: -42.28 kcal Atomic # 7 Polarization: -62.72 SS G_CDS: -3.37 Total: -66.10 kcal Atomic # 8 Polarization: -32.80 SS G_CDS: -1.01 Total: -33.81 kcal Atomic # 14 Polarization: 38.81 SS G_CDS: 2.03 Total: 40.83 kcal Total: -74.49 2.88 -71.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342496720.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.715 kcal (2) G-P(sol) polarization free energy of solvation -74.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds