Wall clock time and date at job start Tue Mar 31 2020 14:35:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35753 * 116.99424 * 2 1 4 4 C 1.39350 * 120.17464 * 90.00464 * 3 2 1 5 5 N 1.39979 * 120.02180 * 0.02562 * 4 3 2 6 6 C 1.46506 * 119.99850 * 179.72301 * 5 4 3 7 7 C 1.50699 * 109.47016 * 180.02562 * 6 5 4 8 8 C 1.38627 * 119.75123 * 89.99787 * 7 6 5 9 9 C 1.37617 * 120.24981 * 179.69930 * 8 7 6 10 10 C 1.40718 * 119.74355 * 0.28290 * 9 8 7 11 11 C 1.41402 * 120.24523 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99833 * 204.38492 * 11 10 9 13 13 C 1.39950 * 119.99673 * 24.38625 * 11 10 9 14 14 N 1.30819 * 120.00082 * 17.85869 * 13 11 10 15 15 Si 1.86800 * 119.99528 * 197.85991 * 13 11 10 16 16 H 1.48491 * 109.47313 * 89.99856 * 15 13 11 17 17 H 1.48501 * 109.46879 * 209.99817 * 15 13 11 18 18 H 1.48499 * 109.47205 * 329.99640 * 15 13 11 19 19 C 1.40718 * 119.51138 * 359.97438 * 10 9 8 20 20 C 1.37614 * 119.74432 * 0.02562 * 19 10 9 21 21 C 1.38585 * 119.95468 * 179.72396 * 4 3 2 22 22 C 1.38526 * 120.31947 * 0.25179 * 21 4 3 23 23 C 1.37746 * 120.35694 * 359.97438 * 22 21 4 24 24 C 1.39839 * 120.03878 * 0.02562 * 23 22 21 25 25 C 1.47547 * 120.15805 * 180.02562 * 24 23 22 26 26 N 1.34779 * 120.00120 * 359.97438 * 25 24 23 27 27 O 1.21593 * 119.99997 * 179.97438 * 25 24 23 28 28 H 1.08992 * 109.47401 * 299.99412 * 1 2 3 29 29 H 1.08995 * 109.47773 * 59.99878 * 1 2 3 30 30 H 1.09005 * 109.46736 * 179.97438 * 1 2 3 31 31 H 0.96992 * 120.00002 * 359.72512 * 5 4 3 32 32 H 1.09003 * 109.46750 * 59.99701 * 6 5 4 33 33 H 1.08998 * 109.47274 * 300.00004 * 6 5 4 34 34 H 1.08001 * 119.87708 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.13392 * 180.29978 * 9 8 7 36 36 H 0.97001 * 119.99459 * 180.02562 * 14 13 11 37 37 H 1.07996 * 120.12653 * 180.02562 * 19 10 9 38 38 H 1.08007 * 119.87423 * 180.02562 * 20 19 10 39 39 H 1.08003 * 119.84169 * 180.27953 * 21 4 3 40 40 H 1.07998 * 119.82278 * 180.02562 * 22 21 4 41 41 H 1.08003 * 119.98297 * 180.02562 * 23 22 21 42 42 H 0.97005 * 119.99415 * 0.02562 * 26 25 24 43 43 H 0.96993 * 119.99826 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 2.3632 1.8337 1.2047 5 7 2.0480 1.2135 2.4193 6 6 2.3880 1.8673 3.6855 7 6 1.9453 0.9982 4.8343 8 6 2.8138 0.0514 5.3552 9 6 2.4224 -0.7434 6.4082 10 6 1.1330 -0.5964 6.9523 11 6 0.7200 -1.4071 8.0347 12 1 -0.3310 -1.5919 8.2006 13 6 1.6733 -1.9700 8.8909 14 7 2.8893 -1.4887 8.9226 15 14 1.2092 -3.4086 9.9884 16 1 1.4658 -4.6824 9.2697 17 1 2.0239 -3.3675 11.2292 18 1 -0.2311 -3.3194 10.3387 19 6 0.2580 0.3642 6.4120 20 6 0.6708 1.1481 5.3590 21 6 2.9974 3.0659 1.1994 22 6 3.3131 3.6848 0.0009 23 6 3.0006 3.0817 -1.1975 24 6 2.3606 1.8384 -1.2096 25 6 2.0252 1.1898 -2.4917 26 7 2.3350 1.7960 -3.6549 27 8 1.4691 0.1085 -2.4988 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6045 0.3509 2.4227 32 1 1.8833 2.8317 3.7434 33 1 3.4662 2.0177 3.7387 34 1 3.8028 -0.0597 4.9359 35 1 3.1022 -1.4771 6.8157 36 1 3.5501 -1.8791 9.5158 37 1 -0.7336 0.4857 6.8222 38 1 0.0011 1.8863 4.9430 39 1 3.2471 3.5459 2.1341 40 1 3.8077 4.6448 0.0061 41 1 3.2499 3.5694 -2.1283 42 1 2.7789 2.6585 -3.6491 43 1 2.1141 1.3698 -4.4977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342555219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:04 Heat of formation + Delta-G solvation = -31.595433 kcal Electronic energy + Delta-G solvation = -26355.162851 eV Core-core repulsion = 22557.843955 eV Total energy + Delta-G solvation = -3797.318895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.53202 -38.75349 -37.82636 -37.15053 -35.39476 -33.88501 -33.53202 -30.87941 -30.44599 -29.41578 -28.74434 -26.84210 -26.27126 -24.42348 -23.13665 -21.93709 -21.10847 -20.55145 -19.87886 -18.44249 -17.42639 -17.40416 -17.05982 -16.05583 -15.79006 -15.54272 -15.39824 -14.68928 -14.61836 -14.42398 -14.19391 -14.03672 -13.98722 -13.50687 -13.37917 -12.96323 -12.59503 -12.21971 -12.07131 -11.98653 -11.94008 -11.59130 -11.27533 -11.20567 -11.11812 -10.63580 -10.53236 -10.16095 -9.99456 -9.83815 -9.73166 -9.64297 -9.48526 -9.24162 -8.81137 -7.59554 -7.48153 -7.20317 -6.88380 -4.48159 0.78643 1.44813 2.55651 2.90162 2.96490 3.00864 3.04601 3.05738 3.35049 3.61719 3.84359 3.88918 4.10128 4.53858 4.71547 4.84525 5.08992 5.31400 5.42663 5.47255 5.55472 5.57251 5.60740 5.73343 5.78239 5.84574 6.07084 6.09889 6.18585 6.23320 6.30615 6.40388 6.58284 6.66420 6.84723 6.96220 7.15889 7.18261 7.24420 7.38883 7.49211 7.71214 7.73483 7.94047 7.98483 8.04291 8.17389 8.18050 8.52366 8.77229 8.84862 10.05701 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002414 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.634145 B =11594.688932 C =12190.219123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.313 6.313 3 C 0.072 3.928 4 C 0.204 3.796 5 N -0.724 5.724 6 C 0.187 3.813 7 C -0.245 4.245 8 C -0.079 4.079 9 C -0.169 4.169 10 C 0.117 3.883 11 C -0.458 4.458 12 H 0.079 0.921 13 C 0.075 3.925 14 N -0.787 5.787 15 Si 0.910 3.090 16 H -0.266 1.266 17 H -0.277 1.277 18 H -0.261 1.261 19 C -0.230 4.230 20 C -0.069 4.069 21 C -0.173 4.173 22 C -0.080 4.080 23 C -0.151 4.151 24 C -0.119 4.119 25 C 0.561 3.439 26 N -0.856 5.856 27 O -0.522 6.522 28 H 0.039 0.961 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.405 0.595 32 H 0.052 0.948 33 H 0.053 0.947 34 H 0.088 0.912 35 H 0.119 0.881 36 H 0.282 0.718 37 H 0.093 0.907 38 H 0.087 0.913 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.399 0.601 43 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.093 9.297 -17.243 19.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 O -0.229 6.229 3 C 0.022 3.978 4 C 0.095 3.905 5 N -0.351 5.351 6 C 0.065 3.935 7 C -0.247 4.247 8 C -0.098 4.098 9 C -0.189 4.189 10 C 0.114 3.886 11 C -0.487 4.487 12 H 0.098 0.902 13 C -0.144 4.144 14 N -0.411 5.411 15 Si 0.734 3.266 16 H -0.191 1.191 17 H -0.202 1.202 18 H -0.185 1.185 19 C -0.250 4.250 20 C -0.088 4.088 21 C -0.196 4.196 22 C -0.099 4.099 23 C -0.172 4.172 24 C -0.123 4.123 25 C 0.348 3.652 26 N -0.421 5.421 27 O -0.398 6.398 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.109 0.891 31 H 0.242 0.758 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.106 0.894 35 H 0.136 0.864 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.105 0.895 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.139 0.861 42 H 0.229 0.771 43 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 1.083 8.478 -16.689 18.750 hybrid contribution -0.217 -0.404 0.248 0.521 sum 0.866 8.074 -16.441 18.337 Atomic orbital electron populations 1.22868 0.79290 1.03030 0.99748 1.86054 1.19585 1.23391 1.93836 1.18168 1.01829 0.88044 0.89749 1.18301 0.94021 0.91862 0.86283 1.45495 1.64127 1.23569 1.01893 1.20015 0.98301 0.94377 0.80825 1.18896 0.96734 1.06081 1.03000 1.20550 0.97000 0.95773 0.96512 1.21319 0.98348 1.02042 0.97155 1.17678 0.91360 0.88959 0.90578 1.19673 0.94515 1.25499 1.08990 0.90241 1.25961 0.94404 0.96806 0.97180 1.69819 1.04155 1.35233 1.31913 0.86279 0.79899 0.81378 0.79035 1.19134 1.20210 1.18524 1.20961 1.00487 1.01243 1.02297 1.20379 0.94325 0.97961 0.96133 1.20762 1.04414 0.95314 0.99150 1.20778 0.98306 0.99335 0.91507 1.20779 1.03485 0.94734 0.98225 1.19944 1.04222 0.95800 0.92366 1.18184 0.78228 0.84719 0.84109 1.43773 1.64736 1.25328 1.08219 1.90855 1.41046 1.20407 1.87516 0.94193 0.93817 0.89111 0.75842 0.93030 0.92873 0.89410 0.86362 0.90656 0.88920 0.89508 0.85182 0.85566 0.86105 0.77124 0.76776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.64 10.48 101.05 1.06 1.69 16 2 O -0.31 -5.21 8.09 -40.88 -0.33 -5.54 16 3 C 0.07 1.10 5.75 -38.54 -0.22 0.88 16 4 C 0.20 3.01 6.67 -83.60 -0.56 2.45 16 5 N -0.72 -11.61 5.73 -59.69 -0.34 -11.95 16 6 C 0.19 3.08 5.02 -5.19 -0.03 3.06 16 7 C -0.25 -4.99 5.27 -104.33 -0.55 -5.54 16 8 C -0.08 -1.77 9.67 -39.66 -0.38 -2.16 16 9 C -0.17 -4.26 8.70 -38.87 -0.34 -4.59 16 10 C 0.12 3.02 5.58 -106.82 -0.60 2.42 16 11 C -0.46 -11.80 9.05 -37.74 -0.34 -12.14 16 12 H 0.08 1.97 7.91 -52.49 -0.42 1.56 16 13 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 14 N -0.79 -19.77 10.95 55.55 0.61 -19.16 16 15 Si 0.91 18.20 29.60 -169.99 -5.03 13.17 16 16 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 17 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 18 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 19 C -0.23 -5.44 9.80 -38.87 -0.38 -5.82 16 20 C -0.07 -1.46 9.67 -39.66 -0.38 -1.85 16 21 C -0.17 -2.13 9.31 -39.35 -0.37 -2.50 16 22 C -0.08 -0.80 10.02 -39.66 -0.40 -1.20 16 23 C -0.15 -1.48 9.53 -39.16 -0.37 -1.86 16 24 C -0.12 -1.55 5.88 -104.87 -0.62 -2.16 16 25 C 0.56 7.20 8.04 -12.46 -0.10 7.10 16 26 N -0.86 -6.57 8.82 30.46 0.27 -6.30 16 27 O -0.52 -8.67 14.81 -16.63 -0.25 -8.92 16 28 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.60 7.47 -51.93 -0.39 0.22 16 30 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.41 6.98 7.83 -40.82 -0.32 6.66 16 32 H 0.05 0.79 7.89 -51.93 -0.41 0.38 16 33 H 0.05 0.84 7.88 -51.93 -0.41 0.44 16 34 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 35 H 0.12 3.09 6.16 -52.49 -0.32 2.77 16 36 H 0.28 6.44 8.30 -40.82 -0.34 6.11 16 37 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.09 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.13 1.49 6.71 -52.48 -0.35 1.13 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 41 H 0.12 0.74 6.40 -52.48 -0.34 0.41 16 42 H 0.40 1.89 6.86 -40.82 -0.28 1.61 16 43 H 0.40 2.50 8.93 -40.82 -0.36 2.13 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -29.87 363.72 -9.52 -39.39 By element: Atomic # 1 Polarization: 19.57 SS G_CDS: -5.27 Total: 14.30 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: -4.66 Total: -20.46 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.54 Total: -37.41 kcal Atomic # 8 Polarization: -13.88 SS G_CDS: -0.58 Total: -14.46 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.87 -9.52 -39.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342555219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.792 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.387 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds