Wall clock time and date at job start Tue Mar 31 2020 14:35:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35753 * 116.99424 * 2 1 4 4 C 1.39350 * 120.17464 * 90.00464 * 3 2 1 5 5 N 1.39979 * 120.02180 * 0.02562 * 4 3 2 6 6 C 1.46506 * 119.99850 * 179.72301 * 5 4 3 7 7 C 1.50699 * 109.47016 * 180.02562 * 6 5 4 8 8 C 1.38627 * 119.75123 * 89.99787 * 7 6 5 9 9 C 1.37617 * 120.24981 * 179.69930 * 8 7 6 10 10 C 1.40718 * 119.74355 * 0.28290 * 9 8 7 11 11 C 1.41402 * 120.24523 * 180.02562 * 10 9 8 12 12 H 1.07994 * 119.99833 * 204.38492 * 11 10 9 13 13 C 1.39950 * 119.99673 * 24.38625 * 11 10 9 14 14 N 1.30819 * 120.00082 * 17.85869 * 13 11 10 15 15 Si 1.86800 * 119.99528 * 197.85991 * 13 11 10 16 16 H 1.48491 * 109.47313 * 89.99856 * 15 13 11 17 17 H 1.48501 * 109.46879 * 209.99817 * 15 13 11 18 18 H 1.48499 * 109.47205 * 329.99640 * 15 13 11 19 19 C 1.40718 * 119.51138 * 359.97438 * 10 9 8 20 20 C 1.37614 * 119.74432 * 0.02562 * 19 10 9 21 21 C 1.38585 * 119.95468 * 179.72396 * 4 3 2 22 22 C 1.38526 * 120.31947 * 0.25179 * 21 4 3 23 23 C 1.37746 * 120.35694 * 359.97438 * 22 21 4 24 24 C 1.39839 * 120.03878 * 0.02562 * 23 22 21 25 25 C 1.47547 * 120.15805 * 180.02562 * 24 23 22 26 26 N 1.34779 * 120.00120 * 359.97438 * 25 24 23 27 27 O 1.21593 * 119.99997 * 179.97438 * 25 24 23 28 28 H 1.08992 * 109.47401 * 299.99412 * 1 2 3 29 29 H 1.08995 * 109.47773 * 59.99878 * 1 2 3 30 30 H 1.09005 * 109.46736 * 179.97438 * 1 2 3 31 31 H 0.96992 * 120.00002 * 359.72512 * 5 4 3 32 32 H 1.09003 * 109.46750 * 59.99701 * 6 5 4 33 33 H 1.08998 * 109.47274 * 300.00004 * 6 5 4 34 34 H 1.08001 * 119.87708 * 359.97438 * 8 7 6 35 35 H 1.08000 * 120.13392 * 180.29978 * 9 8 7 36 36 H 0.97001 * 119.99459 * 180.02562 * 14 13 11 37 37 H 1.07996 * 120.12653 * 180.02562 * 19 10 9 38 38 H 1.08007 * 119.87423 * 180.02562 * 20 19 10 39 39 H 1.08003 * 119.84169 * 180.27953 * 21 4 3 40 40 H 1.07998 * 119.82278 * 180.02562 * 22 21 4 41 41 H 1.08003 * 119.98297 * 180.02562 * 23 22 21 42 42 H 0.97005 * 119.99415 * 0.02562 * 26 25 24 43 43 H 0.96993 * 119.99826 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2096 0.0000 4 6 2.3632 1.8337 1.2047 5 7 2.0480 1.2135 2.4193 6 6 2.3880 1.8673 3.6855 7 6 1.9453 0.9982 4.8343 8 6 2.8138 0.0514 5.3552 9 6 2.4224 -0.7434 6.4082 10 6 1.1330 -0.5964 6.9523 11 6 0.7200 -1.4071 8.0347 12 1 -0.3310 -1.5919 8.2006 13 6 1.6733 -1.9700 8.8909 14 7 2.8893 -1.4887 8.9226 15 14 1.2092 -3.4086 9.9884 16 1 1.4658 -4.6824 9.2697 17 1 2.0239 -3.3675 11.2292 18 1 -0.2311 -3.3194 10.3387 19 6 0.2580 0.3642 6.4120 20 6 0.6708 1.1481 5.3590 21 6 2.9974 3.0659 1.1994 22 6 3.3131 3.6848 0.0009 23 6 3.0006 3.0817 -1.1975 24 6 2.3606 1.8384 -1.2096 25 6 2.0252 1.1898 -2.4917 26 7 2.3350 1.7960 -3.6549 27 8 1.4691 0.1085 -2.4988 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6045 0.3509 2.4227 32 1 1.8833 2.8317 3.7434 33 1 3.4662 2.0177 3.7387 34 1 3.8028 -0.0597 4.9359 35 1 3.1022 -1.4771 6.8157 36 1 3.5501 -1.8791 9.5158 37 1 -0.7336 0.4857 6.8222 38 1 0.0011 1.8863 4.9430 39 1 3.2471 3.5459 2.1341 40 1 3.8077 4.6448 0.0061 41 1 3.2499 3.5694 -2.1283 42 1 2.7789 2.6585 -3.6491 43 1 2.1141 1.3698 -4.4977 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342555219.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:03 Heat of formation + Delta-G solvation = -50.267050 kcal Electronic energy + Delta-G solvation = -26355.972513 eV Core-core repulsion = 22557.843955 eV Total energy + Delta-G solvation = -3798.128557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.51310 -39.88587 -39.40611 -38.22405 -36.69630 -35.40326 -34.56353 -32.41626 -31.37384 -31.21508 -30.06270 -28.16644 -27.50581 -25.74002 -24.41112 -22.92413 -22.87853 -21.95199 -21.12851 -19.37790 -19.26149 -18.41843 -18.02305 -17.26316 -16.98296 -16.78657 -16.61262 -16.02620 -15.76671 -15.64727 -15.58262 -15.43399 -15.10542 -14.82025 -14.43558 -14.33927 -14.24459 -13.85434 -13.42476 -13.20766 -13.11302 -12.90856 -12.78050 -12.74494 -12.37037 -12.31143 -12.10616 -11.48830 -11.33444 -11.18978 -11.08689 -10.96883 -10.75880 -10.60701 -9.73472 -9.42158 -9.30971 -8.69167 -8.28563 -6.39243 -0.16213 0.53785 0.83847 1.11375 1.36078 1.46829 1.49133 1.96000 2.17532 2.39301 2.63443 2.67771 2.89756 3.12433 3.72200 3.90962 4.05019 4.15759 4.25082 4.32377 4.38472 4.40762 4.47561 4.50922 4.56635 4.66203 4.70848 4.77489 4.78232 5.01887 5.12426 5.24808 5.27566 5.33902 5.41570 5.52806 5.66209 5.77933 5.90193 5.93779 6.06335 6.18324 6.27992 6.34309 6.49865 6.61692 6.66438 6.82405 6.89489 6.98810 7.37569 8.27649 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.023335 B = 0.002414 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.634145 B =11594.688932 C =12190.219123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.337 6.337 3 C 0.041 3.959 4 C 0.181 3.819 5 N -0.736 5.736 6 C 0.198 3.802 7 C -0.226 4.226 8 C -0.085 4.085 9 C -0.194 4.194 10 C 0.084 3.916 11 C -0.498 4.498 12 H 0.076 0.924 13 C 0.035 3.965 14 N -0.820 5.820 15 Si 0.982 3.018 16 H -0.264 1.264 17 H -0.266 1.266 18 H -0.258 1.258 19 C -0.246 4.246 20 C -0.069 4.069 21 C -0.173 4.173 22 C -0.073 4.073 23 C -0.130 4.130 24 C -0.135 4.135 25 C 0.555 3.445 26 N -0.828 5.828 27 O -0.571 6.571 28 H 0.041 0.959 29 H 0.040 0.960 30 H 0.094 0.906 31 H 0.396 0.604 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.289 0.711 37 H 0.097 0.903 38 H 0.117 0.883 39 H 0.141 0.859 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.417 0.583 43 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.989 11.915 -19.339 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.254 6.254 3 C -0.009 4.009 4 C 0.075 3.925 5 N -0.363 5.363 6 C 0.076 3.924 7 C -0.228 4.228 8 C -0.103 4.103 9 C -0.214 4.214 10 C 0.082 3.918 11 C -0.527 4.527 12 H 0.094 0.906 13 C -0.181 4.181 14 N -0.446 5.446 15 Si 0.802 3.198 16 H -0.188 1.188 17 H -0.191 1.191 18 H -0.181 1.181 19 C -0.265 4.265 20 C -0.087 4.087 21 C -0.196 4.196 22 C -0.091 4.091 23 C -0.151 4.151 24 C -0.139 4.139 25 C 0.342 3.658 26 N -0.394 5.394 27 O -0.451 6.451 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.113 0.887 31 H 0.230 0.770 32 H 0.088 0.912 33 H 0.080 0.920 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.100 0.900 37 H 0.115 0.885 38 H 0.134 0.866 39 H 0.159 0.841 40 H 0.185 0.815 41 H 0.183 0.817 42 H 0.250 0.750 43 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 2.009 11.173 -18.853 22.007 hybrid contribution -0.422 -0.990 0.620 1.242 sum 1.587 10.183 -18.233 20.944 Atomic orbital electron populations 1.22855 0.78835 1.03297 0.99558 1.86002 1.20392 1.24945 1.94040 1.18523 1.03100 0.88257 0.90987 1.18465 0.95642 0.92965 0.85402 1.45187 1.65487 1.23482 1.02164 1.19885 0.98937 0.93980 0.79613 1.19290 0.95764 1.04671 1.03039 1.20776 0.98087 0.95691 0.95777 1.21275 0.98326 1.03058 0.98723 1.18008 0.92223 0.90117 0.91448 1.19888 0.94799 1.27686 1.10341 0.90629 1.26775 0.94116 0.98904 0.98258 1.69868 1.05147 1.36545 1.33035 0.85206 0.79687 0.77601 0.77269 1.18844 1.19054 1.18149 1.21170 1.00591 1.01475 1.03296 1.20692 0.95080 0.97794 0.95160 1.21084 1.03419 0.94276 1.00851 1.21258 0.97068 1.00450 0.90365 1.21298 1.00507 0.92952 1.00304 1.20165 1.04966 0.97063 0.91718 1.18333 0.77944 0.84319 0.85249 1.43526 1.63112 1.25564 1.07199 1.90834 1.43503 1.22577 1.88203 0.94076 0.94086 0.88717 0.77014 0.91203 0.92008 0.87977 0.88320 0.90015 0.88511 0.86552 0.84148 0.81528 0.81720 0.75040 0.75641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.43 10.48 113.37 1.19 2.61 16 2 O -0.34 -11.53 8.09 -69.83 -0.57 -12.09 16 3 C 0.04 1.22 5.75 22.95 0.13 1.35 16 4 C 0.18 5.08 6.67 38.19 0.25 5.34 16 5 N -0.74 -22.94 5.73 -342.75 -1.96 -24.90 16 6 C 0.20 6.15 5.02 85.63 0.43 6.58 16 7 C -0.23 -9.03 5.27 -19.68 -0.10 -9.14 16 8 C -0.08 -3.83 9.67 22.22 0.21 -3.61 16 9 C -0.19 -10.21 8.70 22.73 0.20 -10.01 16 10 C 0.08 4.56 5.58 -21.29 -0.12 4.44 16 11 C -0.50 -26.94 9.05 23.46 0.21 -26.73 16 12 H 0.08 3.96 7.91 -2.91 -0.02 3.93 16 13 C 0.03 1.77 5.14 85.26 0.44 2.21 16 14 N -0.82 -42.90 10.95 21.83 0.24 -42.66 16 15 Si 0.98 38.33 29.60 68.60 2.03 40.36 16 16 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 17 H -0.27 -9.81 7.11 99.48 0.71 -9.10 16 18 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 19 C -0.25 -11.89 9.80 22.73 0.22 -11.66 16 20 C -0.07 -2.86 9.67 22.22 0.21 -2.65 16 21 C -0.17 -3.70 9.31 22.42 0.21 -3.49 16 22 C -0.07 -1.09 10.02 22.22 0.22 -0.87 16 23 C -0.13 -1.95 9.53 22.54 0.21 -1.74 16 24 C -0.13 -3.22 5.88 -20.03 -0.12 -3.34 16 25 C 0.56 13.38 8.04 86.70 0.70 14.07 16 26 N -0.83 -10.19 8.82 -175.80 -1.55 -11.74 16 27 O -0.57 -19.05 14.81 16.94 0.25 -18.80 16 28 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.04 1.17 7.47 -2.39 -0.02 1.15 16 30 H 0.09 2.55 8.14 -2.38 -0.02 2.53 16 31 H 0.40 13.76 7.83 -92.71 -0.73 13.03 16 32 H 0.07 1.92 7.89 -2.39 -0.02 1.91 16 33 H 0.06 1.82 7.88 -2.39 -0.02 1.80 16 34 H 0.10 4.24 8.06 -2.91 -0.02 4.22 16 35 H 0.10 5.48 6.16 -2.91 -0.02 5.46 16 36 H 0.29 13.64 8.30 -92.71 -0.77 12.87 16 37 H 0.10 4.46 8.06 -2.91 -0.02 4.43 16 38 H 0.12 4.14 8.06 -2.91 -0.02 4.11 16 39 H 0.14 2.67 6.71 -2.91 -0.02 2.65 16 40 H 0.17 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.17 0.95 6.40 -2.91 -0.02 0.93 16 42 H 0.42 2.04 6.86 -92.70 -0.64 1.41 16 43 H 0.41 4.01 8.93 -92.71 -0.83 3.18 16 Total: -1.00 -69.95 363.72 1.84 -68.10 By element: Atomic # 1 Polarization: 39.47 SS G_CDS: -1.10 Total: 38.37 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 4.51 Total: -36.63 kcal Atomic # 7 Polarization: -76.02 SS G_CDS: -3.27 Total: -79.30 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -0.31 Total: -30.89 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Total: -69.95 1.84 -68.10 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342555219.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.838 kcal (2) G-P(sol) polarization free energy of solvation -69.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds