Wall clock time and date at job start Tue Mar 31 2020 14:31:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35878 * 116.99820 * 2 1 4 4 C 1.38827 * 119.93317 * 180.02562 * 3 2 1 5 5 C 1.37913 * 120.06514 * 180.02562 * 4 3 2 6 6 C 1.39373 * 119.93361 * 359.97438 * 5 4 3 7 7 C 1.48382 * 120.06344 * 179.97438 * 6 5 4 8 8 C 1.39457 * 120.47152 * 0.02562 * 7 6 5 9 9 N 1.31780 * 120.90841 * 179.97438 * 8 7 6 10 10 C 1.31720 * 122.01964 * 359.72621 * 9 8 7 11 11 C 1.39590 * 120.83527 * 0.53813 * 10 9 8 12 12 C 1.47856 * 120.50413 * 179.74930 * 11 10 9 13 13 O 1.21543 * 120.00078 * 179.72490 * 12 11 10 14 14 N 1.34777 * 119.99811 * 359.72319 * 12 11 10 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47551 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47429 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00339 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46879 * 60.00096 * 21 19 17 23 23 H 1.48503 * 109.47151 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47196 * 300.00241 * 21 19 17 25 25 C 1.39486 * 120.46953 * 180.02562 * 7 6 5 26 26 C 1.39369 * 119.87066 * 0.25395 * 6 5 4 27 27 C 1.37912 * 119.93571 * 359.47063 * 26 6 5 28 28 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47237 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47723 * 59.99207 * 1 2 3 31 31 H 1.08000 * 119.96839 * 359.97438 * 4 3 2 32 32 H 1.07994 * 120.03297 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.54336 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.59025 * 180.29480 * 10 9 8 35 35 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 36 36 H 1.09000 * 109.47024 * 300.00478 * 15 14 12 37 37 H 1.09004 * 109.46875 * 60.00324 * 15 14 12 38 38 H 1.09000 * 109.47250 * 300.00222 * 16 15 14 39 39 H 1.09004 * 109.46862 * 60.00198 * 16 15 14 40 40 H 0.97005 * 120.00032 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.91332 * 359.97438 * 25 7 6 42 42 H 1.08001 * 120.03281 * 179.72067 * 26 6 5 43 43 H 1.08001 * 119.97150 * 180.27629 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 3.4323 1.2818 -0.0005 5 6 4.0612 2.5092 0.0000 6 6 3.3034 3.6789 0.0005 7 6 3.9770 5.0010 0.0017 8 6 5.3690 5.0854 0.0017 9 7 5.9763 6.2550 0.0022 10 6 5.3069 7.3894 -0.0026 11 6 3.9110 7.3966 0.0027 12 6 3.1670 8.6743 0.0028 13 8 1.9516 8.6699 0.0025 14 7 3.8367 9.8440 0.0034 15 6 3.0996 11.1100 0.0029 16 6 4.0896 12.2765 0.0031 17 6 3.3314 13.5789 0.0032 18 1 2.2514 13.5749 0.0036 19 6 4.0163 14.7754 0.0028 20 7 5.3315 14.7802 0.0028 21 14 3.0765 16.3898 0.0023 22 1 2.2225 16.4657 1.2148 23 1 4.0374 17.5220 0.0025 24 1 2.2224 16.4649 -1.2101 25 6 3.2270 6.1770 0.0028 26 6 1.9117 3.6044 0.0059 27 6 1.2883 2.3742 -0.0004 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 4.0189 0.3750 -0.0005 32 1 5.1397 2.5639 -0.0008 33 1 5.9575 4.1798 0.0004 34 1 5.8447 8.3259 -0.0068 35 1 4.8066 9.8475 0.0033 36 1 2.4733 11.1655 -0.8875 37 1 2.4722 11.1654 0.8925 38 1 4.7162 12.2212 0.8932 39 1 4.7167 12.2209 -0.8868 40 1 5.8134 15.6220 0.0029 41 1 2.1474 6.1465 0.0024 42 1 1.3219 4.5091 0.0109 43 1 0.2099 2.3158 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342643405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:24 Heat of formation + Delta-G solvation = -21.638036 kcal Electronic energy + Delta-G solvation = -25169.614865 eV Core-core repulsion = 21372.727754 eV Total energy + Delta-G solvation = -3796.887110 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96222 -40.27136 -38.90201 -37.75930 -35.04039 -33.37513 -32.99024 -32.30643 -31.50282 -29.80595 -29.05622 -27.61320 -25.55747 -24.29631 -24.13030 -22.40082 -21.94262 -21.04131 -20.23819 -18.80884 -17.87525 -17.14322 -16.89608 -16.39322 -16.18278 -16.00481 -15.77434 -15.15122 -14.98997 -14.76628 -14.50808 -14.26411 -14.15438 -13.81210 -13.41207 -13.26837 -13.21424 -12.95529 -12.83653 -12.34621 -12.30399 -12.20869 -11.74507 -11.25191 -11.19562 -11.05223 -10.69495 -10.39033 -10.22690 -10.19515 -9.70601 -9.61680 -9.49716 -9.44659 -9.26326 -8.63034 -8.40852 -8.14416 -6.11333 -4.14589 0.20540 0.70040 0.93656 1.48222 2.81393 2.92411 3.29950 3.33882 3.35406 3.39484 3.45339 3.84687 4.02744 4.25499 4.32987 4.39750 4.43403 4.57123 4.61599 4.65344 4.69507 4.82357 4.88008 4.98174 5.01899 5.09709 5.24218 5.25693 5.30075 5.60410 5.67295 5.79793 5.86104 5.93526 6.20602 6.23786 6.27995 6.28939 6.34347 6.66062 6.77155 6.92411 7.46806 7.57065 7.64007 7.84071 7.87047 8.23183 8.45967 8.90759 9.50352 11.00099 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.001851 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.575019 B =15124.325913 C =16078.150439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.317 6.317 3 C 0.130 3.870 4 C -0.148 4.148 5 C -0.068 4.068 6 C -0.078 4.078 7 C -0.098 4.098 8 C 0.122 3.878 9 N -0.479 5.479 10 C 0.130 3.870 11 C -0.171 4.171 12 C 0.553 3.447 13 O -0.544 6.544 14 N -0.713 5.713 15 C 0.121 3.879 16 C 0.011 3.989 17 C -0.524 4.524 18 H 0.059 0.941 19 C 0.060 3.940 20 N -0.893 5.893 21 Si 0.898 3.102 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.017 4.017 26 C -0.066 4.066 27 C -0.203 4.203 28 H 0.101 0.899 29 H 0.057 0.943 30 H 0.057 0.943 31 H 0.135 0.865 32 H 0.135 0.865 33 H 0.161 0.839 34 H 0.164 0.836 35 H 0.398 0.602 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.024 0.976 39 H 0.024 0.976 40 H 0.263 0.737 41 H 0.148 0.852 42 H 0.132 0.868 43 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.689 -29.995 -0.014 30.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.084 3.916 4 C -0.167 4.167 5 C -0.086 4.086 6 C -0.079 4.079 7 C -0.100 4.100 8 C -0.036 4.036 9 N -0.186 5.186 10 C -0.028 4.028 11 C -0.177 4.177 12 C 0.338 3.662 13 O -0.423 6.423 14 N -0.362 5.362 15 C -0.001 4.001 16 C -0.026 4.026 17 C -0.562 4.562 18 H 0.077 0.923 19 C -0.142 4.142 20 N -0.531 5.531 21 Si 0.725 3.275 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.201 1.201 25 C -0.043 4.043 26 C -0.084 4.084 27 C -0.222 4.222 28 H 0.119 0.881 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.178 0.822 34 H 0.181 0.819 35 H 0.233 0.767 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.042 0.958 40 H 0.073 0.927 41 H 0.166 0.834 42 H 0.150 0.850 43 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.414 -29.981 -0.011 30.174 hybrid contribution -1.146 1.115 0.001 1.599 sum -4.560 -28.866 -0.010 29.224 Atomic orbital electron populations 1.23097 0.78117 1.04115 1.01615 1.86066 1.21631 1.26918 1.88445 1.19160 0.92429 0.84191 0.95799 1.20353 0.91318 0.98603 1.06407 1.21016 0.99960 0.90591 0.97030 1.18471 0.93000 0.91373 1.05061 1.19651 0.94524 0.92694 1.03144 1.23053 0.91031 0.96138 0.93356 1.67675 1.40451 0.98131 1.12388 1.23119 0.90292 0.97057 0.92283 1.21125 0.95307 0.95024 1.06200 1.18014 0.87254 0.83471 0.77464 1.90748 1.13295 1.87545 1.50700 1.46289 1.10640 1.06447 1.72840 1.21811 0.96062 0.81122 1.01098 1.19340 0.94247 0.91003 0.98004 1.20989 0.93208 0.90329 1.51708 0.92268 1.24991 0.94909 0.99402 0.94925 1.69942 1.06188 1.26921 1.50099 0.86563 0.79539 0.82605 0.78766 1.20123 1.21221 1.20115 1.21772 1.01267 0.89916 0.91333 1.21100 0.93622 0.97613 0.96031 1.21199 1.00315 0.92027 1.08673 0.88112 0.92436 0.92441 0.84758 0.84706 0.82178 0.81921 0.76745 0.92214 0.92206 0.95801 0.95797 0.92746 0.83403 0.85019 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 9.81 101.05 0.99 1.11 16 2 O -0.32 -2.57 10.49 -19.36 -0.20 -2.77 16 3 C 0.13 1.11 6.69 -39.14 -0.26 0.85 16 4 C -0.15 -1.17 9.97 -39.48 -0.39 -1.57 16 5 C -0.07 -0.53 9.43 -39.28 -0.37 -0.90 16 6 C -0.08 -0.73 5.88 -104.88 -0.62 -1.35 16 7 C -0.10 -1.04 5.89 -104.80 -0.62 -1.65 16 8 C 0.12 1.25 10.59 -17.12 -0.18 1.07 16 9 N -0.48 -5.83 10.33 -12.64 -0.13 -5.96 16 10 C 0.13 1.62 10.71 -17.10 -0.18 1.43 16 11 C -0.17 -2.35 5.89 -104.86 -0.62 -2.97 16 12 C 0.55 9.37 7.78 -12.32 -0.10 9.28 16 13 O -0.54 -10.92 16.41 5.33 0.09 -10.84 16 14 N -0.71 -12.18 5.51 -61.25 -0.34 -12.52 16 15 C 0.12 2.51 5.61 -4.05 -0.02 2.48 16 16 C 0.01 0.28 5.09 -27.89 -0.14 0.14 16 17 C -0.52 -14.32 9.11 -34.44 -0.31 -14.63 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 20 N -0.89 -25.79 13.29 55.43 0.74 -25.06 16 21 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 25 C -0.02 -0.21 9.07 -38.52 -0.35 -0.56 16 26 C -0.07 -0.59 9.43 -39.28 -0.37 -0.96 16 27 C -0.20 -1.66 9.02 -39.48 -0.36 -2.01 16 28 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 31 H 0.13 0.84 8.06 -52.49 -0.42 0.42 16 32 H 0.14 0.72 6.22 -52.49 -0.33 0.40 16 33 H 0.16 1.13 6.21 -52.48 -0.33 0.80 16 34 H 0.16 1.74 6.41 -52.49 -0.34 1.40 16 35 H 0.40 5.81 6.53 -40.82 -0.27 5.55 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.26 7.21 8.31 -40.82 -0.34 6.87 16 41 H 0.15 1.75 5.99 -52.48 -0.31 1.43 16 42 H 0.13 1.09 6.26 -52.49 -0.33 0.76 16 43 H 0.13 0.81 6.28 -52.49 -0.33 0.48 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -33.17 366.33 -8.45 -41.61 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.10 Total: 2.52 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: -4.00 Total: -8.69 kcal Atomic # 7 Polarization: -43.81 SS G_CDS: 0.27 Total: -43.54 kcal Atomic # 8 Polarization: -13.49 SS G_CDS: -0.12 Total: -13.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.17 -8.45 -41.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342643405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.975 kcal (2) G-P(sol) polarization free energy of solvation -33.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds