Wall clock time and date at job start Tue Mar 31 2020 14:31:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35878 * 116.99820 * 2 1 4 4 C 1.38827 * 119.93317 * 180.02562 * 3 2 1 5 5 C 1.37913 * 120.06514 * 180.02562 * 4 3 2 6 6 C 1.39373 * 119.93361 * 359.97438 * 5 4 3 7 7 C 1.48382 * 120.06344 * 179.97438 * 6 5 4 8 8 C 1.39457 * 120.47152 * 0.02562 * 7 6 5 9 9 N 1.31780 * 120.90841 * 179.97438 * 8 7 6 10 10 C 1.31720 * 122.01964 * 359.72621 * 9 8 7 11 11 C 1.39590 * 120.83527 * 0.53813 * 10 9 8 12 12 C 1.47856 * 120.50413 * 179.74930 * 11 10 9 13 13 O 1.21543 * 120.00078 * 179.72490 * 12 11 10 14 14 N 1.34777 * 119.99811 * 359.72319 * 12 11 10 15 15 C 1.46496 * 120.00258 * 179.97438 * 14 12 11 16 16 C 1.52993 * 109.47551 * 180.02562 * 15 14 12 17 17 C 1.50696 * 109.47429 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99822 * 0.02562 * 17 16 15 19 19 C 1.37876 * 120.00339 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99769 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00300 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46879 * 60.00096 * 21 19 17 23 23 H 1.48503 * 109.47151 * 179.97438 * 21 19 17 24 24 H 1.48494 * 109.47196 * 300.00241 * 21 19 17 25 25 C 1.39486 * 120.46953 * 180.02562 * 7 6 5 26 26 C 1.39369 * 119.87066 * 0.25395 * 6 5 4 27 27 C 1.37912 * 119.93571 * 359.47063 * 26 6 5 28 28 H 1.08999 * 109.47313 * 179.97438 * 1 2 3 29 29 H 1.09006 * 109.47237 * 299.99648 * 1 2 3 30 30 H 1.08996 * 109.47723 * 59.99207 * 1 2 3 31 31 H 1.08000 * 119.96839 * 359.97438 * 4 3 2 32 32 H 1.07994 * 120.03297 * 180.02562 * 5 4 3 33 33 H 1.08003 * 119.54336 * 0.02562 * 8 7 6 34 34 H 1.07997 * 119.59025 * 180.29480 * 10 9 8 35 35 H 0.96999 * 120.00047 * 0.02562 * 14 12 11 36 36 H 1.09000 * 109.47024 * 300.00478 * 15 14 12 37 37 H 1.09004 * 109.46875 * 60.00324 * 15 14 12 38 38 H 1.09000 * 109.47250 * 300.00222 * 16 15 14 39 39 H 1.09004 * 109.46862 * 60.00198 * 16 15 14 40 40 H 0.97005 * 120.00032 * 180.02562 * 20 19 17 41 41 H 1.08003 * 120.91332 * 359.97438 * 25 7 6 42 42 H 1.08001 * 120.03281 * 179.72067 * 26 6 5 43 43 H 1.08001 * 119.97150 * 180.27629 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2107 0.0000 4 6 3.4323 1.2818 -0.0005 5 6 4.0612 2.5092 0.0000 6 6 3.3034 3.6789 0.0005 7 6 3.9770 5.0010 0.0017 8 6 5.3690 5.0854 0.0017 9 7 5.9763 6.2550 0.0022 10 6 5.3069 7.3894 -0.0026 11 6 3.9110 7.3966 0.0027 12 6 3.1670 8.6743 0.0028 13 8 1.9516 8.6699 0.0025 14 7 3.8367 9.8440 0.0034 15 6 3.0996 11.1100 0.0029 16 6 4.0896 12.2765 0.0031 17 6 3.3314 13.5789 0.0032 18 1 2.2514 13.5749 0.0036 19 6 4.0163 14.7754 0.0028 20 7 5.3315 14.7802 0.0028 21 14 3.0765 16.3898 0.0023 22 1 2.2225 16.4657 1.2148 23 1 4.0374 17.5220 0.0025 24 1 2.2224 16.4649 -1.2101 25 6 3.2270 6.1770 0.0028 26 6 1.9117 3.6044 0.0059 27 6 1.2883 2.3742 -0.0004 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8898 31 1 4.0189 0.3750 -0.0005 32 1 5.1397 2.5639 -0.0008 33 1 5.9575 4.1798 0.0004 34 1 5.8447 8.3259 -0.0068 35 1 4.8066 9.8475 0.0033 36 1 2.4733 11.1655 -0.8875 37 1 2.4722 11.1654 0.8925 38 1 4.7162 12.2212 0.8932 39 1 4.7167 12.2209 -0.8868 40 1 5.8134 15.6220 0.0029 41 1 2.1474 6.1465 0.0024 42 1 1.3219 4.5091 0.0109 43 1 0.2099 2.3158 -0.0008 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342643405.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:23 Heat of formation + Delta-G solvation = -42.328899 kcal Electronic energy + Delta-G solvation = -25170.512088 eV Core-core repulsion = 21372.727754 eV Total energy + Delta-G solvation = -3797.784333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86344 -41.01348 -40.11743 -38.41028 -36.70487 -34.92414 -34.13529 -33.42285 -32.15983 -31.41470 -29.87407 -28.10146 -27.15721 -25.43930 -25.11504 -23.33091 -22.74297 -22.68776 -21.42369 -19.49481 -18.91556 -18.52965 -17.91100 -17.72844 -16.83227 -16.74086 -16.67324 -16.59876 -16.40959 -16.24900 -15.44336 -15.30065 -14.93837 -14.84802 -14.61667 -14.36693 -14.28743 -14.02476 -13.70719 -13.60489 -13.22075 -13.04750 -12.93464 -12.73607 -12.55209 -12.28135 -12.25388 -11.78208 -11.74449 -11.51360 -11.23994 -11.06885 -10.60445 -10.54710 -10.53937 -10.08240 -10.04303 -8.83193 -8.23321 -6.33760 -0.63465 -0.24781 0.33933 0.72329 1.42568 1.44554 1.52513 1.75553 2.07715 2.33957 2.43325 2.58952 2.97363 3.11554 3.16915 3.44247 3.64254 3.69138 3.72877 3.83996 3.88287 4.11567 4.24964 4.26536 4.38310 4.38705 4.47734 4.50063 4.54077 4.64404 4.74391 4.83760 4.87723 4.90498 5.02538 5.18513 5.20007 5.29692 5.45293 5.47580 5.53989 5.57744 5.69334 5.77985 6.15515 6.37980 6.46845 6.74026 6.78887 7.08617 7.35382 8.88110 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028577 B = 0.001851 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 979.575019 B =15124.325913 C =16078.150439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.122 3.878 4 C -0.156 4.156 5 C -0.062 4.062 6 C -0.096 4.096 7 C -0.089 4.089 8 C 0.129 3.871 9 N -0.491 5.491 10 C 0.130 3.870 11 C -0.186 4.186 12 C 0.557 3.443 13 O -0.580 6.580 14 N -0.708 5.708 15 C 0.140 3.860 16 C 0.021 3.979 17 C -0.548 4.548 18 H 0.060 0.940 19 C 0.008 3.992 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.269 1.269 25 C -0.025 4.025 26 C -0.077 4.077 27 C -0.210 4.210 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.151 0.849 32 H 0.162 0.838 33 H 0.197 0.803 34 H 0.175 0.825 35 H 0.410 0.590 36 H 0.051 0.949 37 H 0.051 0.949 38 H 0.011 0.989 39 H 0.011 0.989 40 H 0.266 0.734 41 H 0.146 0.854 42 H 0.131 0.869 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.531 -31.682 -0.017 31.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.077 3.923 4 C -0.174 4.174 5 C -0.079 4.079 6 C -0.097 4.097 7 C -0.091 4.091 8 C -0.028 4.028 9 N -0.198 5.198 10 C -0.027 4.027 11 C -0.192 4.192 12 C 0.344 3.656 13 O -0.461 6.461 14 N -0.359 5.359 15 C 0.017 3.983 16 C -0.017 4.017 17 C -0.586 4.586 18 H 0.078 0.922 19 C -0.191 4.191 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.194 1.194 25 C -0.051 4.051 26 C -0.095 4.095 27 C -0.228 4.228 28 H 0.138 0.862 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.169 0.831 32 H 0.179 0.821 33 H 0.214 0.786 34 H 0.192 0.808 35 H 0.247 0.753 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.074 0.926 41 H 0.164 0.836 42 H 0.149 0.851 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -3.243 -31.689 -0.014 31.854 hybrid contribution -1.223 1.439 0.002 1.888 sum -4.467 -30.250 -0.012 30.578 Atomic orbital electron populations 1.23354 0.76508 1.05660 1.02238 1.86052 1.23395 1.26765 1.88280 1.19412 0.93015 0.84482 0.95411 1.20643 0.91381 0.99365 1.06055 1.21283 1.01208 0.89791 0.95627 1.18509 0.93243 0.91233 1.06694 1.19753 0.94703 0.92631 1.02008 1.23650 0.91190 0.96731 0.91218 1.67767 1.40533 0.98520 1.13004 1.23253 0.89670 0.97934 0.91885 1.20813 0.95722 0.93585 1.09032 1.18429 0.86923 0.84188 0.76048 1.90721 1.14952 1.88115 1.52351 1.46067 1.11192 1.05519 1.73102 1.21317 0.95057 0.81661 1.00294 1.19158 0.94297 0.91622 0.96607 1.21427 0.93628 0.91860 1.51732 0.92203 1.25854 0.95814 1.03010 0.94426 1.70049 1.07611 1.27916 1.50830 0.85511 0.78311 0.78217 0.79081 1.19396 1.20646 1.19383 1.21864 1.01477 0.90214 0.91531 1.21225 0.93892 0.98036 0.96319 1.21367 1.01245 0.91658 1.08534 0.86221 0.91804 0.91809 0.83136 0.82078 0.78623 0.80842 0.75266 0.93040 0.93036 0.97088 0.97078 0.92558 0.83627 0.85145 0.83557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.33 -4.83 10.49 -92.18 -0.97 -5.80 16 3 C 0.12 1.91 6.69 22.55 0.15 2.06 16 4 C -0.16 -2.12 9.97 22.33 0.22 -1.90 16 5 C -0.06 -0.79 9.43 22.47 0.21 -0.58 16 6 C -0.10 -1.64 5.88 -20.03 -0.12 -1.75 16 7 C -0.09 -1.75 5.89 -19.98 -0.12 -1.87 16 8 C 0.13 2.33 10.59 84.99 0.90 3.23 16 9 N -0.49 -11.06 10.33 -193.90 -2.00 -13.06 16 10 C 0.13 3.12 10.71 85.04 0.91 4.03 16 11 C -0.19 -5.11 5.89 -20.02 -0.12 -5.23 16 12 C 0.56 19.22 7.78 86.79 0.68 19.90 16 13 O -0.58 -23.92 16.41 -3.85 -0.06 -23.99 16 14 N -0.71 -24.63 5.51 -465.99 -2.57 -27.20 16 15 C 0.14 5.94 5.61 86.38 0.48 6.43 16 16 C 0.02 1.03 5.09 29.84 0.15 1.18 16 17 C -0.55 -30.33 9.11 25.60 0.23 -30.10 16 18 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 19 C 0.01 0.44 5.46 84.65 0.46 0.91 16 20 N -0.92 -53.84 13.29 21.45 0.28 -53.55 16 21 Si 0.96 43.37 29.54 68.60 2.03 45.39 16 22 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 23 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 25 C -0.02 -0.61 9.07 22.96 0.21 -0.40 16 26 C -0.08 -1.32 9.43 22.47 0.21 -1.11 16 27 C -0.21 -3.18 9.02 22.33 0.20 -2.98 16 28 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 29 H 0.06 0.40 7.66 -2.38 -0.02 0.38 16 30 H 0.06 0.40 7.65 -2.39 -0.02 0.38 16 31 H 0.15 1.49 8.06 -2.91 -0.02 1.47 16 32 H 0.16 1.09 6.22 -2.91 -0.02 1.07 16 33 H 0.20 1.97 6.21 -2.91 -0.02 1.96 16 34 H 0.17 3.59 6.41 -2.91 -0.02 3.58 16 35 H 0.41 12.11 6.53 -92.71 -0.61 11.51 16 36 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.05 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 40 H 0.27 14.60 8.31 -92.70 -0.77 13.83 16 41 H 0.15 3.54 5.99 -2.91 -0.02 3.52 16 42 H 0.13 2.18 6.26 -2.91 -0.02 2.16 16 43 H 0.15 1.63 6.28 -2.91 -0.02 1.61 16 Total: -1.00 -71.12 366.33 2.95 -68.17 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: 0.46 Total: 16.99 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: 5.78 Total: -6.95 kcal Atomic # 7 Polarization: -89.53 SS G_CDS: -4.29 Total: -93.81 kcal Atomic # 8 Polarization: -28.76 SS G_CDS: -1.03 Total: -29.79 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.39 kcal Total: -71.12 2.95 -68.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342643405.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.838 kcal (2) G-P(sol) polarization free energy of solvation -71.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds