Wall clock time and date at job start Tue Mar 31 2020 14:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 116.99951 * 2 1 4 4 C 1.38665 * 119.64936 * 180.02562 * 3 2 1 5 5 C 1.39131 * 119.02674 * 179.72243 * 4 3 2 6 6 N 1.39562 * 120.82753 * 180.29655 * 5 4 3 7 7 C 1.34773 * 119.99941 * 325.08323 * 6 5 4 8 8 O 1.21280 * 119.99984 * 4.53107 * 7 6 5 9 9 C 1.50703 * 119.99711 * 184.53337 * 7 6 5 10 10 C 1.52996 * 109.46888 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47363 * 55.00110 * 10 9 7 12 12 C 1.50701 * 109.47524 * 295.00001 * 10 9 7 13 13 H 1.08002 * 119.99903 * 334.89032 * 12 10 9 14 14 C 1.37874 * 120.00413 * 154.88732 * 12 10 9 15 15 N 1.31516 * 120.00283 * 184.89351 * 14 12 10 16 16 Si 1.86803 * 119.99833 * 4.89472 * 14 12 10 17 17 H 1.48496 * 109.47293 * 94.80207 * 16 14 12 18 18 H 1.48505 * 109.46837 * 214.80356 * 16 14 12 19 19 H 1.48495 * 109.47134 * 334.79919 * 16 14 12 20 20 C 1.50703 * 109.47140 * 174.99955 * 10 9 7 21 21 C 1.38233 * 119.99771 * 54.93801 * 20 10 9 22 22 C 1.38234 * 119.99690 * 179.79192 * 21 20 10 23 23 C 1.38236 * 120.00313 * 0.43449 * 22 21 20 24 24 C 1.38234 * 119.99679 * 359.81628 * 23 22 21 25 25 C 1.38232 * 120.00023 * 235.20914 * 20 10 9 26 26 C 1.39565 * 118.34243 * 0.27301 * 5 4 3 27 27 C 1.37801 * 119.20355 * 0.02562 * 26 5 4 28 28 N 1.32051 * 120.90799 * 0.02562 * 27 26 5 29 29 H 1.09000 * 109.46919 * 60.00655 * 1 2 3 30 30 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47527 * 300.00328 * 1 2 3 32 32 H 1.07995 * 120.48594 * 359.97438 * 4 3 2 33 33 H 0.97006 * 119.99735 * 145.07750 * 6 5 4 34 34 H 1.08995 * 109.46868 * 299.99647 * 9 7 6 35 35 H 1.08995 * 109.47378 * 60.00052 * 9 7 6 36 36 H 0.96995 * 120.00180 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.00363 * 359.97438 * 21 20 10 38 38 H 1.08006 * 120.00213 * 180.27556 * 22 21 20 39 39 H 1.07996 * 120.00439 * 179.83562 * 23 22 21 40 40 H 1.08000 * 120.00073 * 180.02562 * 24 23 22 41 41 H 1.08003 * 119.99948 * 359.97438 * 25 20 10 42 42 H 1.08003 * 120.39880 * 180.02562 * 26 5 4 43 43 H 1.08004 * 119.54607 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4301 1.2730 -0.0005 5 6 4.0482 2.5194 -0.0064 6 7 5.4396 2.6277 -0.0134 7 6 6.1889 1.7274 0.6532 8 8 5.6602 0.7771 1.1902 9 6 7.6838 1.9015 0.7313 10 6 8.2896 0.7519 1.5389 11 1 7.9850 -0.1992 1.1020 12 6 7.8043 0.8283 2.9636 13 1 7.4887 1.7751 3.3765 14 6 7.7632 -0.3103 3.7401 15 7 7.2504 -0.2629 4.9502 16 14 8.4360 -1.9203 3.0731 17 1 9.8427 -2.0908 3.5173 18 1 7.6157 -3.0484 3.5828 19 1 8.3842 -1.9015 1.5892 20 6 9.7927 0.8577 1.5139 21 6 10.4101 2.0255 1.9212 22 6 11.7890 2.1211 1.9023 23 6 12.5501 1.0521 1.4676 24 6 11.9324 -0.1138 1.0554 25 6 10.5537 -0.2109 1.0784 26 6 3.2421 3.6588 -0.0057 27 6 1.8719 3.5129 0.0013 28 7 1.3174 2.3145 0.0078 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.0205 0.3687 -0.0005 33 1 5.8674 3.3510 -0.4981 34 1 8.1029 1.8994 -0.2748 35 1 7.9144 2.8486 1.2191 36 1 7.2219 -1.0638 5.4965 37 1 9.8154 2.8621 2.2569 38 1 12.2717 3.0319 2.2247 39 1 13.6273 1.1277 1.4503 40 1 12.5270 -0.9492 0.7162 41 1 10.0710 -1.1219 0.7564 42 1 3.6869 4.6429 -0.0106 43 1 1.2428 4.3908 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344667547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:45 Heat of formation + Delta-G solvation = -2.147800 kcal Electronic energy + Delta-G solvation = -26890.221997 eV Core-core repulsion = 23094.180047 eV Total energy + Delta-G solvation = -3796.041950 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.76384 -39.46926 -38.59075 -37.61772 -34.96398 -34.11007 -31.80806 -30.99867 -30.53203 -30.28638 -28.92710 -27.16125 -26.09492 -23.71242 -23.00313 -22.31167 -21.89962 -20.50118 -19.38956 -18.49841 -17.33277 -17.00236 -16.47536 -15.96223 -15.85738 -15.79452 -15.64316 -14.84693 -14.66106 -14.27547 -14.02620 -13.79391 -13.75730 -13.40347 -13.21660 -12.87314 -12.65331 -12.41804 -12.28074 -12.04409 -11.96140 -11.69341 -11.32774 -11.17452 -10.78874 -10.65570 -10.56427 -10.43665 -9.99149 -9.85001 -9.55670 -9.24506 -9.07068 -8.53242 -8.46087 -8.40642 -8.27873 -7.86150 -6.03461 -4.00893 1.30957 1.32391 2.02025 2.08256 3.00670 3.12865 3.37041 3.38992 3.43536 3.45919 3.92880 4.40772 4.45002 4.50335 5.04485 5.10424 5.15202 5.25087 5.31343 5.32660 5.38932 5.45711 5.48445 5.58965 5.61975 5.78284 5.81125 5.86029 5.92855 5.97300 6.14130 6.16296 6.24781 6.29366 6.46403 6.62986 6.74995 6.83304 6.96624 7.08217 7.18255 7.35959 7.52144 7.61283 7.65070 7.74527 7.96901 8.45926 8.62953 8.95077 9.59026 11.09368 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003453 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.851981 B = 8108.080961 C = 9079.759807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.305 6.305 3 C 0.334 3.666 4 C -0.196 4.196 5 C 0.237 3.763 6 N -0.685 5.685 7 C 0.510 3.490 8 O -0.467 6.467 9 C -0.112 4.112 10 C 0.048 3.952 11 H 0.057 0.943 12 C -0.488 4.488 13 H 0.072 0.928 14 C 0.084 3.916 15 N -0.894 5.894 16 Si 0.868 3.132 17 H -0.277 1.277 18 H -0.291 1.291 19 H -0.258 1.258 20 C -0.038 4.038 21 C -0.108 4.108 22 C -0.124 4.124 23 C -0.150 4.150 24 C -0.122 4.122 25 C -0.144 4.144 26 C -0.243 4.243 27 C 0.151 3.849 28 N -0.560 5.560 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.157 0.843 33 H 0.410 0.590 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.263 0.737 37 H 0.118 0.882 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.137 0.863 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.550 7.694 -13.357 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.212 6.212 3 C 0.156 3.844 4 C -0.219 4.219 5 C 0.132 3.868 6 N -0.332 5.332 7 C 0.298 3.702 8 O -0.335 6.335 9 C -0.153 4.153 10 C 0.028 3.972 11 H 0.075 0.925 12 C -0.525 4.525 13 H 0.090 0.910 14 C -0.119 4.119 15 N -0.532 5.532 16 Si 0.697 3.303 17 H -0.203 1.203 18 H -0.218 1.218 19 H -0.183 1.183 20 C -0.039 4.039 21 C -0.126 4.126 22 C -0.142 4.142 23 C -0.168 4.168 24 C -0.140 4.140 25 C -0.162 4.162 26 C -0.266 4.266 27 C -0.005 4.005 28 N -0.286 5.286 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.076 0.924 32 H 0.174 0.826 33 H 0.246 0.754 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.136 0.864 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.131 0.869 42 H 0.155 0.845 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -4.679 6.469 -12.716 15.014 hybrid contribution 1.281 -0.321 -0.149 1.329 sum -3.399 6.147 -12.864 14.657 Atomic orbital electron populations 1.22814 0.77595 1.02684 1.02218 1.86273 1.22564 1.24605 1.87744 1.19577 0.88880 0.84511 0.91426 1.21115 0.92143 0.99501 1.09154 1.17687 0.84074 0.92660 0.92331 1.43862 1.03424 1.32639 1.53277 1.21219 0.90314 0.81776 0.76885 1.90788 1.73125 1.28831 1.40781 1.21650 0.89345 1.03071 1.01191 1.18313 0.86515 0.94873 0.97460 0.92456 1.20597 1.42011 0.96385 0.93463 0.91026 1.24879 0.93948 0.98486 0.94610 1.69885 1.44443 1.29224 1.09610 0.87049 0.78979 0.84222 0.80067 1.20270 1.21758 1.18275 1.20728 0.98262 0.92430 0.92473 1.20931 0.93763 0.98336 0.99613 1.21051 0.94331 0.98280 1.00523 1.20870 0.98821 0.94290 1.02853 1.20983 0.94709 0.97441 1.00846 1.21169 0.93767 0.99165 1.02109 1.21730 0.94850 0.98367 1.11694 1.22060 0.91995 0.93586 0.92812 1.67284 1.40940 0.98711 1.21658 0.92536 0.88872 0.92358 0.82557 0.75373 0.90578 0.89152 0.92747 0.86355 0.87103 0.87319 0.87268 0.86940 0.84484 0.82390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.49 10.38 101.05 1.05 1.53 16 2 O -0.31 -4.85 10.47 -18.73 -0.20 -5.05 16 3 C 0.33 5.52 7.48 -17.17 -0.13 5.39 16 4 C -0.20 -3.40 8.71 -39.09 -0.34 -3.74 16 5 C 0.24 3.56 6.34 -83.51 -0.53 3.03 16 6 N -0.68 -9.54 5.35 -9.72 -0.05 -9.59 16 7 C 0.51 9.35 7.44 -10.99 -0.08 9.27 16 8 O -0.47 -10.95 12.48 5.56 0.07 -10.88 16 9 C -0.11 -1.92 4.83 -27.88 -0.13 -2.05 16 10 C 0.05 1.05 1.24 -92.92 -0.12 0.93 16 11 H 0.06 1.36 5.16 -51.93 -0.27 1.09 16 12 C -0.49 -13.12 7.20 -34.44 -0.25 -13.37 16 13 H 0.07 2.09 8.05 -52.49 -0.42 1.67 16 14 C 0.08 2.43 5.47 -17.82 -0.10 2.33 16 15 N -0.89 -27.87 13.96 55.43 0.77 -27.09 16 16 Si 0.87 22.26 25.24 -169.99 -4.29 17.97 16 17 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 18 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 19 H -0.26 -6.16 4.96 56.52 0.28 -5.88 16 20 C -0.04 -0.77 4.30 -104.62 -0.45 -1.22 16 21 C -0.11 -1.99 8.95 -39.58 -0.35 -2.34 16 22 C -0.12 -2.01 10.05 -39.58 -0.40 -2.41 16 23 C -0.15 -2.38 10.05 -39.58 -0.40 -2.78 16 24 C -0.12 -2.07 10.05 -39.58 -0.40 -2.47 16 25 C -0.14 -2.80 8.13 -39.58 -0.32 -3.12 16 26 C -0.24 -2.93 10.05 -39.25 -0.39 -3.32 16 27 C 0.15 1.82 11.17 -17.62 -0.20 1.62 16 28 N -0.56 -8.22 9.21 -13.41 -0.12 -8.34 16 29 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 30 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 32 H 0.16 3.04 6.32 -52.49 -0.33 2.71 16 33 H 0.41 3.93 8.83 -40.82 -0.36 3.57 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.41 7.31 -51.93 -0.38 1.03 16 36 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 37 H 0.12 2.06 7.35 -52.49 -0.39 1.68 16 38 H 0.11 1.49 8.06 -52.48 -0.42 1.07 16 39 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 41 H 0.11 2.19 6.28 -52.48 -0.33 1.86 16 42 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 43 H 0.16 1.31 8.06 -52.48 -0.42 0.89 16 LS Contribution 358.09 15.07 5.40 5.40 Total: -1.00 -35.16 358.09 -7.49 -42.66 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -5.54 Total: 7.67 kcal Atomic # 6 Polarization: -9.19 SS G_CDS: -3.54 Total: -12.73 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.60 Total: -45.03 kcal Atomic # 8 Polarization: -15.81 SS G_CDS: -0.13 Total: -15.94 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.29 Total: 17.97 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.16 -7.49 -42.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344667547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.509 kcal (2) G-P(sol) polarization free energy of solvation -35.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds