Wall clock time and date at job start Tue Mar 31 2020 14:38:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35676 * 116.99951 * 2 1 4 4 C 1.38665 * 119.64936 * 180.02562 * 3 2 1 5 5 C 1.39131 * 119.02674 * 179.72243 * 4 3 2 6 6 N 1.39562 * 120.82753 * 180.29655 * 5 4 3 7 7 C 1.34773 * 119.99941 * 325.08323 * 6 5 4 8 8 O 1.21280 * 119.99984 * 4.53107 * 7 6 5 9 9 C 1.50703 * 119.99711 * 184.53337 * 7 6 5 10 10 C 1.52996 * 109.46888 * 179.97438 * 9 7 6 11 11 H 1.09000 * 109.47363 * 55.00110 * 10 9 7 12 12 C 1.50701 * 109.47524 * 295.00001 * 10 9 7 13 13 H 1.08002 * 119.99903 * 334.89032 * 12 10 9 14 14 C 1.37874 * 120.00413 * 154.88732 * 12 10 9 15 15 N 1.31516 * 120.00283 * 184.89351 * 14 12 10 16 16 Si 1.86803 * 119.99833 * 4.89472 * 14 12 10 17 17 H 1.48496 * 109.47293 * 94.80207 * 16 14 12 18 18 H 1.48505 * 109.46837 * 214.80356 * 16 14 12 19 19 H 1.48495 * 109.47134 * 334.79919 * 16 14 12 20 20 C 1.50703 * 109.47140 * 174.99955 * 10 9 7 21 21 C 1.38233 * 119.99771 * 54.93801 * 20 10 9 22 22 C 1.38234 * 119.99690 * 179.79192 * 21 20 10 23 23 C 1.38236 * 120.00313 * 0.43449 * 22 21 20 24 24 C 1.38234 * 119.99679 * 359.81628 * 23 22 21 25 25 C 1.38232 * 120.00023 * 235.20914 * 20 10 9 26 26 C 1.39565 * 118.34243 * 0.27301 * 5 4 3 27 27 C 1.37801 * 119.20355 * 0.02562 * 26 5 4 28 28 N 1.32051 * 120.90799 * 0.02562 * 27 26 5 29 29 H 1.09000 * 109.46919 * 60.00655 * 1 2 3 30 30 H 1.09004 * 109.47178 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47527 * 300.00328 * 1 2 3 32 32 H 1.07995 * 120.48594 * 359.97438 * 4 3 2 33 33 H 0.97006 * 119.99735 * 145.07750 * 6 5 4 34 34 H 1.08995 * 109.46868 * 299.99647 * 9 7 6 35 35 H 1.08995 * 109.47378 * 60.00052 * 9 7 6 36 36 H 0.96995 * 120.00180 * 180.02562 * 15 14 12 37 37 H 1.07997 * 120.00363 * 359.97438 * 21 20 10 38 38 H 1.08006 * 120.00213 * 180.27556 * 22 21 20 39 39 H 1.07996 * 120.00439 * 179.83562 * 23 22 21 40 40 H 1.08000 * 120.00073 * 180.02562 * 24 23 22 41 41 H 1.08003 * 119.99948 * 359.97438 * 25 20 10 42 42 H 1.08003 * 120.39880 * 180.02562 * 26 5 4 43 43 H 1.08004 * 119.54607 * 179.97438 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4301 1.2730 -0.0005 5 6 4.0482 2.5194 -0.0064 6 7 5.4396 2.6277 -0.0134 7 6 6.1889 1.7274 0.6532 8 8 5.6602 0.7771 1.1902 9 6 7.6838 1.9015 0.7313 10 6 8.2896 0.7519 1.5389 11 1 7.9850 -0.1992 1.1020 12 6 7.8043 0.8283 2.9636 13 1 7.4887 1.7751 3.3765 14 6 7.7632 -0.3103 3.7401 15 7 7.2504 -0.2629 4.9502 16 14 8.4360 -1.9203 3.0731 17 1 9.8427 -2.0908 3.5173 18 1 7.6157 -3.0484 3.5828 19 1 8.3842 -1.9015 1.5892 20 6 9.7927 0.8577 1.5139 21 6 10.4101 2.0255 1.9212 22 6 11.7890 2.1211 1.9023 23 6 12.5501 1.0521 1.4676 24 6 11.9324 -0.1138 1.0554 25 6 10.5537 -0.2109 1.0784 26 6 3.2421 3.6588 -0.0057 27 6 1.8719 3.5129 0.0013 28 7 1.3174 2.3145 0.0078 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 4.0205 0.3687 -0.0005 33 1 5.8674 3.3510 -0.4981 34 1 8.1029 1.8994 -0.2748 35 1 7.9144 2.8486 1.2191 36 1 7.2219 -1.0638 5.4965 37 1 9.8154 2.8621 2.2569 38 1 12.2717 3.0319 2.2247 39 1 13.6273 1.1277 1.4503 40 1 12.5270 -0.9492 0.7162 41 1 10.0710 -1.1219 0.7564 42 1 3.6869 4.6429 -0.0106 43 1 1.2428 4.3908 0.0023 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344667547.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:45 Heat of formation + Delta-G solvation = -28.137393 kcal Electronic energy + Delta-G solvation = -26891.348991 eV Core-core repulsion = 23094.180047 eV Total energy + Delta-G solvation = -3797.168943 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.95900 -40.81640 -39.95146 -38.79405 -36.33768 -35.73765 -33.80238 -32.25136 -31.66445 -31.59190 -30.28170 -28.25027 -27.80063 -25.03383 -24.39050 -23.61128 -23.22840 -21.84084 -20.92350 -19.68276 -19.09298 -18.55087 -17.74553 -17.17992 -17.04994 -16.94337 -16.84010 -16.57822 -16.01077 -15.80309 -15.50124 -15.02136 -15.00576 -14.74720 -14.62864 -14.38264 -14.20158 -13.92780 -13.62791 -13.35203 -13.31378 -13.02816 -12.71491 -12.68069 -12.27139 -12.15169 -11.91194 -11.83962 -11.81464 -11.44347 -11.13331 -11.03572 -10.71983 -10.42250 -9.72222 -9.63582 -9.49598 -9.31510 -8.25536 -6.21957 0.15284 0.21409 0.65658 0.71676 1.27842 1.30934 1.36165 1.73339 1.89115 2.30167 2.35486 2.81641 3.05798 3.18976 3.39742 3.88880 4.01826 4.07252 4.16130 4.20996 4.27504 4.30008 4.41091 4.42154 4.42338 4.48288 4.58561 4.63207 4.71613 4.82284 4.83145 4.85683 5.01840 5.13426 5.18334 5.22672 5.36570 5.38562 5.64591 5.67951 5.75872 5.80413 5.99532 6.26437 6.29207 6.33379 6.48827 6.77874 6.87318 7.29187 7.40498 8.91436 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015562 B = 0.003453 C = 0.003083 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.851981 B = 8108.080961 C = 9079.759807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.331 6.331 3 C 0.318 3.682 4 C -0.229 4.229 5 C 0.221 3.779 6 N -0.662 5.662 7 C 0.508 3.492 8 O -0.531 6.531 9 C -0.107 4.107 10 C 0.048 3.952 11 H 0.035 0.965 12 C -0.461 4.461 13 H 0.037 0.963 14 C 0.019 3.981 15 N -0.952 5.952 16 Si 0.917 3.083 17 H -0.269 1.269 18 H -0.305 1.305 19 H -0.237 1.237 20 C -0.061 4.061 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.142 4.142 24 C -0.125 4.125 25 C -0.164 4.164 26 C -0.227 4.227 27 C 0.153 3.847 28 N -0.564 5.564 29 H 0.066 0.934 30 H 0.117 0.883 31 H 0.055 0.945 32 H 0.122 0.878 33 H 0.434 0.566 34 H 0.118 0.882 35 H 0.109 0.891 36 H 0.258 0.742 37 H 0.121 0.879 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.136 0.864 41 H 0.104 0.896 42 H 0.180 0.820 43 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.743 10.392 -15.583 18.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.239 6.239 3 C 0.140 3.860 4 C -0.253 4.253 5 C 0.117 3.883 6 N -0.311 5.311 7 C 0.297 3.703 8 O -0.404 6.404 9 C -0.146 4.146 10 C 0.029 3.971 11 H 0.053 0.947 12 C -0.499 4.499 13 H 0.055 0.945 14 C -0.177 4.177 15 N -0.594 5.594 16 Si 0.744 3.256 17 H -0.195 1.195 18 H -0.232 1.232 19 H -0.161 1.161 20 C -0.062 4.062 21 C -0.138 4.138 22 C -0.138 4.138 23 C -0.159 4.159 24 C -0.143 4.143 25 C -0.183 4.183 26 C -0.249 4.249 27 C -0.002 4.002 28 N -0.291 5.291 29 H 0.085 0.915 30 H 0.135 0.865 31 H 0.074 0.926 32 H 0.140 0.860 33 H 0.274 0.726 34 H 0.136 0.864 35 H 0.127 0.873 36 H 0.067 0.933 37 H 0.139 0.861 38 H 0.162 0.838 39 H 0.164 0.836 40 H 0.154 0.846 41 H 0.122 0.878 42 H 0.197 0.803 43 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -2.854 9.223 -15.020 17.855 hybrid contribution 0.717 -0.984 0.450 1.298 sum -2.137 8.239 -14.570 16.874 Atomic orbital electron populations 1.23059 0.75556 1.04464 1.02520 1.86234 1.24771 1.25044 1.87828 1.19669 0.88783 0.85303 0.92263 1.21049 0.92781 0.99568 1.11882 1.17953 0.84496 0.92957 0.92917 1.43493 1.03123 1.32174 1.52306 1.21504 0.91075 0.81400 0.76278 1.90788 1.74214 1.31546 1.43817 1.21604 0.88336 1.01803 1.02896 1.18157 0.88547 0.95823 0.94587 0.94712 1.20852 1.39286 0.94259 0.95514 0.94506 1.25624 0.95273 1.01885 0.94968 1.70037 1.48183 1.29719 1.11443 0.86267 0.78251 0.80369 0.80728 1.19473 1.23225 1.16099 1.20453 0.96608 0.93999 0.95106 1.21069 0.95167 0.97792 0.99793 1.21441 0.93378 0.99786 0.99233 1.21349 1.00777 0.93237 1.00578 1.21332 0.93783 0.98976 1.00208 1.21261 0.95208 0.98609 1.03188 1.22147 0.94594 0.98893 1.09268 1.22935 0.92808 0.93922 0.90561 1.67390 1.40863 0.99086 1.21719 0.91529 0.86473 0.92608 0.85994 0.72559 0.86443 0.87259 0.93341 0.86108 0.83839 0.83600 0.84577 0.87832 0.80278 0.77803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.89 10.38 113.37 1.18 2.07 16 2 O -0.33 -11.12 10.47 -89.93 -0.94 -12.06 16 3 C 0.32 10.86 7.48 84.72 0.63 11.49 16 4 C -0.23 -8.42 8.71 22.59 0.20 -8.22 16 5 C 0.22 6.54 6.34 38.45 0.24 6.78 16 6 N -0.66 -17.82 5.35 -303.07 -1.62 -19.44 16 7 C 0.51 18.93 7.44 87.66 0.65 19.58 16 8 O -0.53 -26.43 12.48 -3.03 -0.04 -26.47 16 9 C -0.11 -3.55 4.83 29.85 0.14 -3.41 16 10 C 0.05 2.13 1.24 -12.29 -0.02 2.12 16 11 H 0.03 1.69 5.16 -2.39 -0.01 1.68 16 12 C -0.46 -25.82 7.20 25.60 0.18 -25.64 16 13 H 0.04 2.26 8.05 -2.91 -0.02 2.24 16 14 C 0.02 1.14 5.47 84.65 0.46 1.60 16 15 N -0.95 -62.83 13.96 21.45 0.30 -62.53 16 16 Si 0.92 47.85 25.24 68.60 1.73 49.58 16 17 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 18 H -0.30 -16.36 7.11 99.48 0.71 -15.65 16 19 H -0.24 -11.41 4.96 99.48 0.49 -10.91 16 20 C -0.06 -2.41 4.30 -19.87 -0.09 -2.49 16 21 C -0.12 -4.15 8.95 22.27 0.20 -3.95 16 22 C -0.12 -3.44 10.05 22.27 0.22 -3.22 16 23 C -0.14 -3.83 10.05 22.27 0.22 -3.61 16 24 C -0.13 -3.83 10.05 22.27 0.22 -3.60 16 25 C -0.16 -6.14 8.13 22.27 0.18 -5.96 16 26 C -0.23 -4.79 10.05 22.49 0.23 -4.57 16 27 C 0.15 3.24 11.17 84.56 0.94 4.18 16 28 N -0.56 -16.05 9.21 -309.16 -2.85 -18.90 16 29 H 0.07 1.37 8.11 -2.39 -0.02 1.36 16 30 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 31 H 0.06 1.29 8.10 -2.39 -0.02 1.27 16 32 H 0.12 5.28 6.32 -2.91 -0.02 5.26 16 33 H 0.43 7.13 8.83 -92.70 -0.82 6.31 16 34 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.11 3.23 7.31 -2.39 -0.02 3.21 16 36 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 37 H 0.12 4.01 7.35 -2.91 -0.02 3.99 16 38 H 0.14 3.14 8.06 -2.91 -0.02 3.11 16 39 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 40 H 0.14 3.36 8.06 -2.91 -0.02 3.34 16 41 H 0.10 3.95 6.28 -2.91 -0.02 3.93 16 42 H 0.18 2.24 8.06 -2.91 -0.02 2.22 16 43 H 0.21 2.37 8.06 -2.91 -0.02 2.34 16 Total: -1.00 -84.87 358.09 2.41 -82.46 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: 0.01 Total: 24.20 kcal Atomic # 6 Polarization: -22.66 SS G_CDS: 5.82 Total: -16.84 kcal Atomic # 7 Polarization: -96.70 SS G_CDS: -4.17 Total: -100.87 kcal Atomic # 8 Polarization: -37.55 SS G_CDS: -0.98 Total: -38.53 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 1.73 Total: 49.58 kcal Total: -84.87 2.41 -82.46 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344667547.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.321 kcal (2) G-P(sol) polarization free energy of solvation -84.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds