Wall clock time and date at job start Tue Mar 31 2020 14:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35679 * 117.00191 * 2 1 4 4 C 1.38665 * 119.65195 * 179.97438 * 3 2 1 5 5 C 1.39128 * 119.02870 * 180.02562 * 4 3 2 6 6 N 1.39562 * 120.82537 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99785 * 145.46516 * 6 5 4 8 8 O 1.21278 * 120.00068 * 4.73025 * 7 6 5 9 9 C 1.50706 * 119.99981 * 184.72980 * 7 6 5 10 10 C 1.53003 * 109.46930 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46896 * 306.12379 * 10 9 7 12 12 C 1.50694 * 109.47416 * 66.12667 * 10 9 7 13 13 H 1.08003 * 119.99925 * 25.92449 * 12 10 9 14 14 C 1.37876 * 119.99971 * 205.92868 * 12 10 9 15 15 N 1.31513 * 120.00173 * 354.76895 * 14 12 10 16 16 Si 1.86800 * 119.99999 * 175.03750 * 14 12 10 17 17 H 1.48494 * 109.47250 * 179.72740 * 16 14 12 18 18 H 1.48499 * 109.47289 * 299.72675 * 16 14 12 19 19 H 1.48504 * 109.47060 * 59.72721 * 16 14 12 20 20 C 1.50704 * 109.46721 * 186.12505 * 10 9 7 21 21 C 1.38232 * 120.00098 * 294.01573 * 20 10 9 22 22 C 1.38234 * 120.00378 * 179.78595 * 21 20 10 23 23 C 1.38234 * 119.99569 * 0.44942 * 22 21 20 24 24 C 1.38242 * 120.00276 * 359.80331 * 23 22 21 25 25 C 1.38228 * 120.00006 * 114.28989 * 20 10 9 26 26 C 1.39562 * 118.34506 * 0.27703 * 5 4 3 27 27 C 1.37804 * 119.19845 * 359.45120 * 26 5 4 28 28 N 1.32061 * 120.90850 * 0.56023 * 27 26 5 29 29 H 1.09006 * 109.47334 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.46933 * 59.99999 * 1 2 3 31 31 H 1.08998 * 109.47546 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.48232 * 0.02562 * 4 3 2 33 33 H 0.97004 * 119.99858 * 325.46160 * 6 5 4 34 34 H 1.08992 * 109.46910 * 60.00205 * 9 7 6 35 35 H 1.09004 * 109.46798 * 300.00272 * 9 7 6 36 36 H 0.97006 * 119.99635 * 354.67105 * 15 14 12 37 37 H 1.08002 * 119.99756 * 0.02562 * 21 20 10 38 38 H 1.08000 * 120.00622 * 180.27039 * 22 21 20 39 39 H 1.08000 * 120.00332 * 179.83287 * 23 22 21 40 40 H 1.07998 * 119.99937 * 180.02562 * 24 23 22 41 41 H 1.08006 * 120.00154 * 359.97438 * 25 20 10 42 42 H 1.07998 * 120.40148 * 179.72310 * 26 5 4 43 43 H 1.08002 * 119.54884 * 180.29518 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4302 1.2730 0.0005 5 6 4.0483 2.5194 0.0011 6 7 5.4397 2.6276 0.0011 7 6 6.0369 3.6388 -0.6602 8 8 5.3647 4.5023 -1.1828 9 6 7.5402 3.6964 -0.7501 10 6 7.9563 4.9341 -1.5476 11 1 7.4474 4.9332 -2.5115 12 6 7.5789 6.1756 -0.7814 13 1 7.4912 6.1405 0.2945 14 6 7.3456 7.3564 -1.4538 15 7 7.5518 7.4264 -2.7508 16 14 6.7437 8.8591 -0.5215 17 1 6.5773 9.9934 -1.4652 18 1 5.4398 8.5539 0.1204 19 1 7.7354 9.2244 0.5217 20 6 9.4472 4.9127 -1.7665 21 6 10.3057 5.0346 -0.6900 22 6 11.6733 5.0105 -0.8903 23 6 12.1823 4.8738 -2.1683 24 6 11.3237 4.7572 -3.2455 25 6 9.9562 4.7769 -3.0445 26 6 3.2423 3.6588 0.0070 27 6 1.8720 3.5129 0.0005 28 7 1.3174 2.3144 0.0000 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.0204 0.3686 0.0005 33 1 5.9769 1.9751 0.4771 34 1 7.9088 2.8008 -1.2501 35 1 7.9623 3.7522 0.2533 36 1 7.9408 6.6726 -3.2214 37 1 9.9080 5.1447 0.3080 38 1 12.3441 5.1013 -0.0488 39 1 13.2507 4.8577 -2.3252 40 1 11.7214 4.6500 -4.2438 41 1 9.2854 4.6857 -3.8861 42 1 3.6871 4.6429 0.0121 43 1 1.2429 4.3908 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344667550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:48 Heat of formation + Delta-G solvation = -12.822673 kcal Electronic energy + Delta-G solvation = -26667.723951 eV Core-core repulsion = 22871.219104 eV Total energy + Delta-G solvation = -3796.504847 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.80994 -39.53569 -38.52231 -37.62560 -35.04646 -34.26183 -31.60611 -30.97286 -30.47996 -30.17040 -28.86774 -27.29516 -25.33187 -23.47788 -23.37679 -22.40618 -21.71773 -20.51547 -19.71759 -18.58577 -17.29308 -16.89767 -16.48740 -16.06221 -16.04299 -15.64073 -15.60544 -14.96727 -14.44391 -14.18386 -13.97729 -13.84256 -13.69399 -13.42495 -13.32284 -12.88710 -12.53969 -12.40459 -12.28394 -11.97011 -11.81445 -11.61143 -11.31777 -11.10806 -10.78284 -10.61007 -10.50513 -10.21713 -10.09877 -9.86469 -9.79338 -9.18941 -8.72036 -8.63071 -8.38714 -8.35520 -8.19893 -7.72179 -6.30071 -4.01154 1.18026 1.36781 2.12955 2.17527 2.84983 3.12813 3.42346 3.45675 3.49491 3.66088 3.89230 4.38611 4.54013 4.60903 4.92945 5.10408 5.16618 5.20033 5.23389 5.34167 5.45427 5.54105 5.54771 5.56733 5.60375 5.69090 5.84075 5.89427 5.91754 6.07419 6.21219 6.25732 6.29977 6.33503 6.56222 6.71207 6.80617 6.85274 7.11150 7.16661 7.22936 7.29728 7.59287 7.63717 7.78894 7.92954 8.11860 8.42075 8.59060 8.88494 9.68680 11.09155 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003220 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.329183 B = 8694.324407 C =10090.195898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.312 6.312 3 C 0.330 3.670 4 C -0.230 4.230 5 C 0.237 3.763 6 N -0.685 5.685 7 C 0.513 3.487 8 O -0.469 6.469 9 C -0.114 4.114 10 C 0.073 3.927 11 H 0.050 0.950 12 C -0.574 4.574 13 H 0.046 0.954 14 C 0.033 3.967 15 N -0.903 5.903 16 Si 1.060 2.940 17 H -0.283 1.283 18 H -0.288 1.288 19 H -0.290 1.290 20 C -0.035 4.035 21 C -0.105 4.105 22 C -0.130 4.130 23 C -0.151 4.151 24 C -0.125 4.125 25 C -0.129 4.129 26 C -0.209 4.209 27 C 0.152 3.848 28 N -0.558 5.558 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.092 0.908 32 H 0.140 0.860 33 H 0.409 0.591 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.271 0.729 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.158 0.842 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -13.137 6.055 15.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.219 6.219 3 C 0.151 3.849 4 C -0.254 4.254 5 C 0.132 3.868 6 N -0.332 5.332 7 C 0.301 3.699 8 O -0.337 6.337 9 C -0.155 4.155 10 C 0.054 3.946 11 H 0.069 0.931 12 C -0.611 4.611 13 H 0.065 0.935 14 C -0.173 4.173 15 N -0.538 5.538 16 Si 0.889 3.111 17 H -0.209 1.209 18 H -0.214 1.214 19 H -0.217 1.217 20 C -0.036 4.036 21 C -0.124 4.124 22 C -0.148 4.148 23 C -0.169 4.169 24 C -0.143 4.143 25 C -0.148 4.148 26 C -0.232 4.232 27 C -0.003 4.003 28 N -0.284 5.284 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.158 0.842 33 H 0.245 0.755 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.083 0.917 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.175 0.825 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -5.816 -11.206 5.409 13.735 hybrid contribution 1.551 -1.634 0.451 2.298 sum -4.264 -12.839 5.860 14.744 Atomic orbital electron populations 1.22804 0.77459 1.02543 1.02470 1.86196 1.22715 1.24782 1.88198 1.19381 0.88582 0.84695 0.92220 1.20611 0.92501 0.97769 1.14532 1.17731 0.84276 0.92552 0.92195 1.43910 1.03827 1.31535 1.53949 1.21239 0.91798 0.79767 0.77091 1.90765 1.65293 1.34951 1.42682 1.21710 0.89320 1.01317 1.03118 1.17870 0.87066 0.92346 0.97341 0.93145 1.21540 1.51170 0.94565 0.93812 0.93537 1.25584 0.94540 1.00843 0.96303 1.70742 1.40039 1.34717 1.08295 0.83684 0.76369 0.76019 0.75071 1.20882 1.21434 1.21670 1.20799 0.98355 0.92354 0.92073 1.20924 0.92315 0.99819 0.99298 1.21025 0.95530 1.01789 0.96479 1.20845 0.98544 1.04299 0.93196 1.20975 0.93821 1.01494 0.97978 1.21077 0.94692 1.01816 0.97172 1.22297 0.94228 1.00533 1.06139 1.22273 0.92484 0.93368 0.92154 1.67310 1.40847 0.98740 1.21503 0.92405 0.92360 0.88935 0.84237 0.75487 0.90953 0.89606 0.91730 0.86626 0.87392 0.87531 0.87400 0.87136 0.82470 0.82115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.38 101.05 1.05 1.45 16 2 O -0.31 -3.95 10.47 -18.74 -0.20 -4.15 16 3 C 0.33 4.68 7.48 -17.17 -0.13 4.55 16 4 C -0.23 -3.11 9.99 -39.09 -0.39 -3.50 16 5 C 0.24 3.55 6.34 -83.52 -0.53 3.02 16 6 N -0.69 -9.72 5.34 -9.72 -0.05 -9.77 16 7 C 0.51 9.42 7.45 -10.98 -0.08 9.34 16 8 O -0.47 -10.75 12.50 5.56 0.07 -10.68 16 9 C -0.11 -2.03 4.96 -27.88 -0.14 -2.17 16 10 C 0.07 1.65 1.23 -92.92 -0.11 1.53 16 11 H 0.05 1.30 6.57 -51.93 -0.34 0.96 16 12 C -0.57 -14.80 6.35 -34.44 -0.22 -15.02 16 13 H 0.05 1.20 7.82 -52.48 -0.41 0.79 16 14 C 0.03 0.93 5.45 -17.82 -0.10 0.83 16 15 N -0.90 -26.76 13.57 55.43 0.75 -26.01 16 16 Si 1.06 25.28 29.91 -169.99 -5.08 20.20 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 20 C -0.04 -0.74 4.54 -104.63 -0.47 -1.22 16 21 C -0.11 -2.06 8.91 -39.59 -0.35 -2.41 16 22 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 23 C -0.15 -2.52 10.05 -39.58 -0.40 -2.92 16 24 C -0.12 -2.21 10.05 -39.58 -0.40 -2.60 16 25 C -0.13 -2.60 9.20 -39.59 -0.36 -2.96 16 26 C -0.21 -3.35 8.77 -39.25 -0.34 -3.69 16 27 C 0.15 2.16 11.17 -17.61 -0.20 1.96 16 28 N -0.56 -8.09 9.21 -13.41 -0.12 -8.21 16 29 H 0.06 0.54 8.10 -51.93 -0.42 0.11 16 30 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 31 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.14 1.56 8.06 -52.49 -0.42 1.13 16 33 H 0.41 4.23 8.83 -40.82 -0.36 3.87 16 34 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.09 1.39 8.01 -51.93 -0.42 0.97 16 36 H 0.27 7.92 6.24 -40.82 -0.25 7.66 16 37 H 0.12 2.19 7.87 -52.49 -0.41 1.77 16 38 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 39 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 41 H 0.11 2.19 7.96 -52.48 -0.42 1.77 16 42 H 0.16 2.86 6.31 -52.49 -0.33 2.53 16 43 H 0.16 1.85 8.06 -52.49 -0.42 1.43 16 LS Contribution 367.04 15.07 5.53 5.53 Total: -1.00 -32.85 367.04 -8.22 -41.07 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -5.54 Total: 8.48 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -3.58 Total: -16.46 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.58 Total: -43.99 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.13 Total: -14.83 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.08 Total: 20.20 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -32.85 -8.22 -41.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344667550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.249 kcal (2) G-P(sol) polarization free energy of solvation -32.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds