Wall clock time and date at job start Tue Mar 31 2020 14:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35679 * 117.00191 * 2 1 4 4 C 1.38665 * 119.65195 * 179.97438 * 3 2 1 5 5 C 1.39128 * 119.02870 * 180.02562 * 4 3 2 6 6 N 1.39562 * 120.82537 * 180.02562 * 5 4 3 7 7 C 1.34771 * 119.99785 * 145.46516 * 6 5 4 8 8 O 1.21278 * 120.00068 * 4.73025 * 7 6 5 9 9 C 1.50706 * 119.99981 * 184.72980 * 7 6 5 10 10 C 1.53003 * 109.46930 * 180.02562 * 9 7 6 11 11 H 1.08999 * 109.46896 * 306.12379 * 10 9 7 12 12 C 1.50694 * 109.47416 * 66.12667 * 10 9 7 13 13 H 1.08003 * 119.99925 * 25.92449 * 12 10 9 14 14 C 1.37876 * 119.99971 * 205.92868 * 12 10 9 15 15 N 1.31513 * 120.00173 * 354.76895 * 14 12 10 16 16 Si 1.86800 * 119.99999 * 175.03750 * 14 12 10 17 17 H 1.48494 * 109.47250 * 179.72740 * 16 14 12 18 18 H 1.48499 * 109.47289 * 299.72675 * 16 14 12 19 19 H 1.48504 * 109.47060 * 59.72721 * 16 14 12 20 20 C 1.50704 * 109.46721 * 186.12505 * 10 9 7 21 21 C 1.38232 * 120.00098 * 294.01573 * 20 10 9 22 22 C 1.38234 * 120.00378 * 179.78595 * 21 20 10 23 23 C 1.38234 * 119.99569 * 0.44942 * 22 21 20 24 24 C 1.38242 * 120.00276 * 359.80331 * 23 22 21 25 25 C 1.38228 * 120.00006 * 114.28989 * 20 10 9 26 26 C 1.39562 * 118.34506 * 0.27703 * 5 4 3 27 27 C 1.37804 * 119.19845 * 359.45120 * 26 5 4 28 28 N 1.32061 * 120.90850 * 0.56023 * 27 26 5 29 29 H 1.09006 * 109.47334 * 300.00336 * 1 2 3 30 30 H 1.09004 * 109.46933 * 59.99999 * 1 2 3 31 31 H 1.08998 * 109.47546 * 180.02562 * 1 2 3 32 32 H 1.07997 * 120.48232 * 0.02562 * 4 3 2 33 33 H 0.97004 * 119.99858 * 325.46160 * 6 5 4 34 34 H 1.08992 * 109.46910 * 60.00205 * 9 7 6 35 35 H 1.09004 * 109.46798 * 300.00272 * 9 7 6 36 36 H 0.97006 * 119.99635 * 354.67105 * 15 14 12 37 37 H 1.08002 * 119.99756 * 0.02562 * 21 20 10 38 38 H 1.08000 * 120.00622 * 180.27039 * 22 21 20 39 39 H 1.08000 * 120.00332 * 179.83287 * 23 22 21 40 40 H 1.07998 * 119.99937 * 180.02562 * 24 23 22 41 41 H 1.08006 * 120.00154 * 359.97438 * 25 20 10 42 42 H 1.07998 * 120.40148 * 179.72310 * 26 5 4 43 43 H 1.08002 * 119.54884 * 180.29518 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4302 1.2730 0.0005 5 6 4.0483 2.5194 0.0011 6 7 5.4397 2.6276 0.0011 7 6 6.0369 3.6388 -0.6602 8 8 5.3647 4.5023 -1.1828 9 6 7.5402 3.6964 -0.7501 10 6 7.9563 4.9341 -1.5476 11 1 7.4474 4.9332 -2.5115 12 6 7.5789 6.1756 -0.7814 13 1 7.4912 6.1405 0.2945 14 6 7.3456 7.3564 -1.4538 15 7 7.5518 7.4264 -2.7508 16 14 6.7437 8.8591 -0.5215 17 1 6.5773 9.9934 -1.4652 18 1 5.4398 8.5539 0.1204 19 1 7.7354 9.2244 0.5217 20 6 9.4472 4.9127 -1.7665 21 6 10.3057 5.0346 -0.6900 22 6 11.6733 5.0105 -0.8903 23 6 12.1823 4.8738 -2.1683 24 6 11.3237 4.7572 -3.2455 25 6 9.9562 4.7769 -3.0445 26 6 3.2423 3.6588 0.0070 27 6 1.8720 3.5129 0.0005 28 7 1.3174 2.3144 0.0000 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 4.0204 0.3686 0.0005 33 1 5.9769 1.9751 0.4771 34 1 7.9088 2.8008 -1.2501 35 1 7.9623 3.7522 0.2533 36 1 7.9408 6.6726 -3.2214 37 1 9.9080 5.1447 0.3080 38 1 12.3441 5.1013 -0.0488 39 1 13.2507 4.8577 -2.3252 40 1 11.7214 4.6500 -4.2438 41 1 9.2854 4.6857 -3.8861 42 1 3.6871 4.6429 0.0121 43 1 1.2429 4.3908 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344667550.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:38:48 Heat of formation + Delta-G solvation = -34.242335 kcal Electronic energy + Delta-G solvation = -26668.652777 eV Core-core repulsion = 22871.219104 eV Total energy + Delta-G solvation = -3797.433674 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.99942 -40.85606 -39.94201 -38.74759 -36.46170 -35.89498 -33.39205 -32.21834 -31.66271 -31.59569 -30.27769 -28.17851 -27.08810 -25.03547 -24.60614 -23.68697 -23.16236 -21.89145 -21.27865 -19.72181 -18.86960 -18.43259 -17.71861 -17.38847 -17.09341 -16.87317 -16.80557 -16.43646 -15.77036 -15.64966 -15.63907 -15.11191 -15.04889 -14.76692 -14.61271 -14.33812 -14.06322 -13.95186 -13.52630 -13.28298 -13.19054 -12.78495 -12.72026 -12.62164 -12.24726 -12.08508 -11.95740 -11.86994 -11.72944 -11.52019 -11.13638 -10.65805 -10.53407 -10.38033 -9.78939 -9.63705 -9.54945 -9.27600 -8.43314 -6.12013 0.04229 0.19260 0.68222 0.73350 1.50441 1.59182 1.66505 1.75017 1.79187 2.32556 2.62802 2.74778 3.10711 3.34613 3.36820 3.73444 3.99631 4.09730 4.12604 4.19061 4.26850 4.29357 4.42446 4.45741 4.46190 4.47079 4.55443 4.60657 4.70689 4.82219 4.83050 4.86192 5.02264 5.09333 5.15063 5.22775 5.39961 5.42910 5.59665 5.75410 5.82010 5.94228 6.19738 6.23052 6.30859 6.39415 6.43046 6.78086 6.80514 7.22444 7.64052 8.96817 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003220 C = 0.002774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.329183 B = 8694.324407 C =10090.195898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.315 6.315 3 C 0.323 3.677 4 C -0.221 4.221 5 C 0.224 3.776 6 N -0.664 5.664 7 C 0.515 3.485 8 O -0.524 6.524 9 C -0.108 4.108 10 C 0.074 3.926 11 H 0.006 0.994 12 C -0.560 4.560 13 H 0.043 0.957 14 C -0.022 4.022 15 N -0.944 5.944 16 Si 1.094 2.906 17 H -0.292 1.292 18 H -0.282 1.282 19 H -0.268 1.268 20 C -0.057 4.057 21 C -0.120 4.120 22 C -0.126 4.126 23 C -0.144 4.144 24 C -0.126 4.126 25 C -0.152 4.152 26 C -0.230 4.230 27 C 0.154 3.846 28 N -0.562 5.562 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.125 0.875 32 H 0.167 0.833 33 H 0.430 0.570 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.261 0.739 37 H 0.117 0.883 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.134 0.866 41 H 0.096 0.904 42 H 0.130 0.870 43 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.752 -15.134 7.670 17.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.222 6.222 3 C 0.144 3.856 4 C -0.245 4.245 5 C 0.120 3.880 6 N -0.312 5.312 7 C 0.304 3.696 8 O -0.397 6.397 9 C -0.148 4.148 10 C 0.055 3.945 11 H 0.024 0.976 12 C -0.598 4.598 13 H 0.061 0.939 14 C -0.221 4.221 15 N -0.582 5.582 16 Si 0.919 3.081 17 H -0.218 1.218 18 H -0.208 1.208 19 H -0.194 1.194 20 C -0.058 4.058 21 C -0.138 4.138 22 C -0.144 4.144 23 C -0.162 4.162 24 C -0.144 4.144 25 C -0.171 4.171 26 C -0.253 4.253 27 C -0.001 4.001 28 N -0.288 5.288 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.144 0.856 32 H 0.185 0.815 33 H 0.270 0.730 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.071 0.929 37 H 0.135 0.865 38 H 0.160 0.840 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.114 0.886 42 H 0.148 0.852 43 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -4.444 -13.275 7.078 15.687 hybrid contribution 1.104 -1.173 -0.039 1.612 sum -3.340 -14.449 7.039 16.415 Atomic orbital electron populations 1.23074 0.75712 1.04716 1.02275 1.86201 1.24433 1.23781 1.87818 1.19661 0.89094 0.85144 0.91728 1.20783 0.92615 0.97896 1.13158 1.17835 0.84284 0.92991 0.92893 1.43529 1.03923 1.30772 1.53014 1.21343 0.91958 0.79734 0.76605 1.90761 1.66285 1.37370 1.45260 1.21614 0.89110 1.00335 1.03751 1.17691 0.88219 0.93219 0.95344 0.97586 1.21816 1.48872 0.95416 0.93684 0.93854 1.26666 0.95163 1.03788 0.96462 1.70824 1.43167 1.34732 1.09431 0.83233 0.76795 0.73490 0.74570 1.21801 1.20791 1.19362 1.20603 0.97308 0.94609 0.93230 1.21024 0.93458 1.00608 0.98723 1.21414 0.94878 1.00016 0.98048 1.21310 1.00364 1.02090 0.92424 1.21297 0.92738 1.00461 0.99929 1.21136 0.96075 1.03330 0.96510 1.22193 0.95308 0.99829 1.08001 1.22551 0.92073 0.94182 0.91282 1.67380 1.40979 0.98850 1.21628 0.92337 0.92798 0.85649 0.81549 0.73025 0.88049 0.87479 0.92856 0.86524 0.84006 0.83715 0.84854 0.88624 0.85224 0.80041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.62 10.38 113.37 1.18 1.79 16 2 O -0.32 -7.33 10.47 -89.96 -0.94 -8.28 16 3 C 0.32 8.68 7.48 84.72 0.63 9.32 16 4 C -0.22 -5.61 9.99 22.59 0.23 -5.39 16 5 C 0.22 6.63 6.34 38.44 0.24 6.88 16 6 N -0.66 -18.37 5.34 -303.07 -1.62 -19.99 16 7 C 0.51 19.23 7.45 87.66 0.65 19.88 16 8 O -0.52 -25.33 12.50 -3.02 -0.04 -25.37 16 9 C -0.11 -3.83 4.96 29.85 0.15 -3.68 16 10 C 0.07 3.48 1.23 -12.29 -0.02 3.47 16 11 H 0.01 0.33 6.57 -2.39 -0.02 0.31 16 12 C -0.56 -29.77 6.35 25.60 0.16 -29.61 16 13 H 0.04 2.27 7.82 -2.91 -0.02 2.24 16 14 C -0.02 -1.26 5.45 84.65 0.46 -0.80 16 15 N -0.94 -58.73 13.57 21.45 0.29 -58.44 16 16 Si 1.09 52.31 29.91 68.60 2.05 54.36 16 17 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 18 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C -0.06 -2.43 4.54 -19.87 -0.09 -2.52 16 21 C -0.12 -4.53 8.91 22.27 0.20 -4.33 16 22 C -0.13 -3.94 10.05 22.27 0.22 -3.72 16 23 C -0.14 -4.31 10.05 22.27 0.22 -4.08 16 24 C -0.13 -4.25 10.05 22.27 0.22 -4.03 16 25 C -0.15 -6.22 9.20 22.27 0.20 -6.01 16 26 C -0.23 -7.59 8.77 22.49 0.20 -7.39 16 27 C 0.15 4.38 11.17 84.56 0.94 5.33 16 28 N -0.56 -15.83 9.21 -309.16 -2.85 -18.68 16 29 H 0.06 0.98 8.10 -2.38 -0.02 0.96 16 30 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 31 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.17 3.23 8.06 -2.91 -0.02 3.20 16 33 H 0.43 8.02 8.83 -92.71 -0.82 7.20 16 34 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.11 3.32 8.01 -2.38 -0.02 3.30 16 36 H 0.26 16.23 6.24 -92.70 -0.58 15.65 16 37 H 0.12 4.26 7.87 -2.91 -0.02 4.24 16 38 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 40 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.10 4.05 7.96 -2.91 -0.02 4.03 16 42 H 0.13 5.05 6.31 -2.91 -0.02 5.03 16 43 H 0.18 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -75.46 367.04 3.12 -72.35 By element: Atomic # 1 Polarization: 28.53 SS G_CDS: 0.41 Total: 28.94 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 5.82 Total: -24.89 kcal Atomic # 7 Polarization: -92.94 SS G_CDS: -4.18 Total: -97.11 kcal Atomic # 8 Polarization: -32.66 SS G_CDS: -0.98 Total: -33.64 kcal Atomic # 14 Polarization: 52.31 SS G_CDS: 2.05 Total: 54.36 kcal Total: -75.46 3.12 -72.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344667550.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.104 kcal (2) G-P(sol) polarization free energy of solvation -75.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.346 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds