Wall clock time and date at job start Tue Mar 31 2020 14:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 117.00457 * 2 1 4 4 C 1.38859 * 119.98361 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.23938 * 179.97438 * 4 3 2 6 6 C 1.38003 * 120.20722 * 359.74847 * 5 4 3 7 7 C 1.39562 * 119.96763 * 0.50643 * 6 5 4 8 8 C 1.47855 * 120.12299 * 179.77068 * 7 6 5 9 9 O 1.21551 * 120.00204 * 50.09943 * 8 7 6 10 10 N 1.34782 * 119.99952 * 230.10369 * 8 7 6 11 11 C 1.46496 * 120.00313 * 355.00637 * 10 8 7 12 12 C 1.50699 * 109.47001 * 265.67368 * 11 10 8 13 13 H 1.07998 * 120.00086 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99817 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99965 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99935 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46915 * 89.99827 * 16 14 12 18 18 H 1.48501 * 109.46952 * 209.99915 * 16 14 12 19 19 H 1.48504 * 109.46957 * 330.00044 * 16 14 12 20 20 C 1.46505 * 119.99917 * 175.00148 * 10 8 7 21 21 C 1.50702 * 109.46509 * 90.00168 * 20 10 8 22 22 C 1.38223 * 119.61896 * 94.98360 * 21 20 10 23 23 C 1.38630 * 119.16301 * 180.02562 * 22 21 20 24 24 C 1.38667 * 118.41926 * 359.97438 * 23 22 21 25 25 C 1.38184 * 119.16637 * 0.02562 * 24 23 22 26 26 N 1.31854 * 119.61777 * 274.99621 * 21 20 10 27 27 C 1.38454 * 119.98991 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47038 * 300.00123 * 1 2 3 30 30 H 1.09002 * 109.46809 * 60.00189 * 1 2 3 31 31 H 1.08005 * 119.87705 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.89427 * 180.02562 * 5 4 3 33 33 H 1.08008 * 120.02114 * 180.25799 * 6 5 4 34 34 H 1.09007 * 109.46713 * 25.66663 * 11 10 8 35 35 H 1.08997 * 109.47400 * 145.66450 * 11 10 8 36 36 H 0.97006 * 119.99609 * 180.02562 * 15 14 12 37 37 H 1.08994 * 109.46917 * 330.00498 * 20 10 8 38 38 H 1.08992 * 109.47208 * 209.99733 * 20 10 8 39 39 H 1.08003 * 120.41476 * 359.97438 * 22 21 20 40 40 H 1.08002 * 120.78631 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.41753 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.62003 * 180.27551 * 25 24 23 43 43 H 1.07997 * 120.10113 * 0.04679 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3753 0.0005 5 6 1.9118 3.6098 0.0011 6 6 3.2893 3.6930 0.0063 7 6 4.0581 2.5283 0.0004 8 6 5.5342 2.6135 0.0009 9 8 6.1021 3.3185 0.8120 10 7 6.2502 1.9095 -0.8982 11 6 5.5748 0.9766 -1.8037 12 6 5.6043 -0.4087 -1.2112 13 1 6.0790 -0.5774 -0.2559 14 6 5.0252 -1.4607 -1.8887 15 7 4.4467 -1.2551 -3.0518 16 14 5.0623 -3.1780 -1.1546 17 1 3.8572 -3.3820 -0.3113 18 1 5.0778 -4.1833 -2.2475 19 1 6.2817 -3.3339 -0.3213 20 6 7.7038 2.0772 -0.9701 21 6 8.3694 1.0914 -0.0447 22 6 8.8132 -0.1197 -0.5414 23 6 9.4237 -1.0196 0.3183 24 6 9.5661 -0.6659 1.6516 25 6 9.0976 0.5629 2.0760 26 7 8.5215 1.3942 1.2296 27 6 3.4288 1.2830 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2112 2.3162 0.0014 32 1 1.3180 4.5118 0.0019 33 1 3.7723 4.6591 0.0109 34 1 4.5402 1.2903 -1.9429 35 1 6.0855 0.9710 -2.7666 36 1 4.0390 -1.9952 -3.5282 37 1 7.9677 3.0915 -0.6711 38 1 8.0399 1.9004 -1.9917 39 1 8.6852 -0.3621 -1.5861 40 1 9.7806 -1.9732 -0.0419 41 1 10.0372 -1.3423 2.3494 42 1 9.2087 0.8477 3.1118 43 1 4.0183 0.3781 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000349434568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:45 Heat of formation + Delta-G solvation = 1.616632 kcal Electronic energy + Delta-G solvation = -28149.076423 eV Core-core repulsion = 24353.197711 eV Total energy + Delta-G solvation = -3795.878712 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07665 -39.59161 -38.60705 -36.53479 -35.12164 -32.84286 -31.95316 -31.52335 -30.43413 -29.72009 -27.64488 -26.99216 -26.08321 -23.27028 -23.01701 -22.50962 -22.04326 -21.26091 -19.05823 -17.27854 -16.76678 -16.41490 -16.09833 -15.85254 -15.49979 -15.47197 -15.30731 -15.17574 -15.02511 -14.39984 -13.94195 -13.46762 -13.21657 -13.13654 -12.84358 -12.65551 -12.44703 -12.23849 -12.12189 -11.94693 -11.57724 -11.39080 -11.29851 -11.24318 -10.95343 -10.79255 -10.68347 -10.47529 -10.14844 -9.78505 -9.38504 -9.12179 -8.91285 -8.61894 -8.48854 -8.29797 -7.78376 -7.69117 -6.18681 -4.24074 1.48302 1.60705 1.80442 1.94237 3.22955 3.30405 3.32131 3.41572 3.72418 3.87214 4.28049 4.32642 4.50972 4.80442 5.10840 5.13501 5.19719 5.23757 5.26205 5.33290 5.36511 5.47979 5.50739 5.62878 5.65845 5.71562 5.87404 5.95157 5.99062 6.05334 6.21003 6.25232 6.50668 6.59349 6.66081 6.71554 6.73668 6.82171 7.04813 7.17007 7.18479 7.22000 7.53456 7.75405 7.88669 8.05562 8.30035 8.56455 8.79454 9.01587 9.41996 10.87390 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.005868 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.013844 B = 4770.812122 C = 6401.307805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.307 6.307 3 C 0.117 3.883 4 C -0.199 4.199 5 C -0.101 4.101 6 C -0.116 4.116 7 C -0.082 4.082 8 C 0.559 3.441 9 O -0.542 6.542 10 N -0.587 5.587 11 C 0.230 3.770 12 C -0.534 4.534 13 H 0.061 0.939 14 C 0.075 3.925 15 N -0.881 5.881 16 Si 0.884 3.116 17 H -0.276 1.276 18 H -0.286 1.286 19 H -0.273 1.273 20 C 0.173 3.827 21 C 0.124 3.876 22 C -0.130 4.130 23 C -0.085 4.085 24 C -0.181 4.181 25 C 0.086 3.914 26 N -0.459 5.459 27 C -0.097 4.097 28 H 0.094 0.906 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.048 0.952 35 H 0.034 0.966 36 H 0.265 0.735 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.137 0.863 40 H 0.127 0.873 41 H 0.125 0.875 42 H 0.146 0.854 43 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 2.874 3.342 4.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.221 6.221 3 C 0.072 3.928 4 C -0.218 4.218 5 C -0.120 4.120 6 C -0.135 4.135 7 C -0.085 4.085 8 C 0.347 3.653 9 O -0.420 6.420 10 N -0.317 5.317 11 C 0.111 3.889 12 C -0.572 4.572 13 H 0.079 0.921 14 C -0.129 4.129 15 N -0.518 5.518 16 Si 0.712 3.288 17 H -0.201 1.201 18 H -0.211 1.211 19 H -0.198 1.198 20 C 0.049 3.951 21 C -0.016 4.016 22 C -0.150 4.150 23 C -0.111 4.111 24 C -0.202 4.202 25 C -0.071 4.071 26 N -0.168 5.168 27 C -0.115 4.115 28 H 0.113 0.887 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.141 0.859 34 H 0.066 0.934 35 H 0.052 0.948 36 H 0.074 0.926 37 H 0.106 0.894 38 H 0.107 0.893 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.143 0.857 42 H 0.164 0.836 43 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.731 3.766 3.870 5.449 hybrid contribution -0.207 -2.105 -0.018 2.116 sum -0.938 1.660 3.852 4.298 Atomic orbital electron populations 1.22970 0.79495 1.03424 1.00711 1.86189 1.20337 1.26785 1.88747 1.18920 0.92333 0.83945 0.97596 1.21271 0.99546 0.92620 1.08375 1.20661 0.94143 0.96669 1.00491 1.20945 0.93376 0.97416 1.01787 1.19678 0.93403 0.93336 1.02042 1.18255 0.86551 0.79674 0.80813 1.90743 1.71728 1.41717 1.37842 1.48119 1.05401 1.41714 1.36477 1.19676 0.93851 0.87020 0.88357 1.21363 1.37531 0.92330 1.05988 0.92073 1.24846 0.94680 0.98774 0.94604 1.69914 1.36031 1.32225 1.13642 0.86688 0.78922 0.84207 0.79003 1.20148 1.21140 1.19794 1.20104 0.80602 0.97580 0.96809 1.21617 0.94186 0.94414 0.91338 1.21996 0.97253 0.94005 1.01770 1.21489 0.97062 0.99044 0.93530 1.22026 1.02959 0.98500 0.96672 1.22633 0.94784 0.90559 0.99154 1.67576 1.11723 1.34386 1.03142 1.21599 0.91959 1.00034 0.97916 0.88738 0.93236 0.92943 0.86006 0.86009 0.85890 0.93393 0.94752 0.92561 0.89412 0.89272 0.84488 0.85527 0.85728 0.83647 0.80929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 9.81 101.05 0.99 1.38 16 2 O -0.31 -5.85 10.49 -19.44 -0.20 -6.06 16 3 C 0.12 2.27 6.68 -39.27 -0.26 2.00 16 4 C -0.20 -3.20 9.03 -39.35 -0.36 -3.55 16 5 C -0.10 -1.57 10.03 -39.67 -0.40 -1.96 16 6 C -0.12 -2.07 9.73 -39.17 -0.38 -2.45 16 7 C -0.08 -1.70 4.87 -104.99 -0.51 -2.21 16 8 C 0.56 12.44 7.21 -12.32 -0.09 12.35 16 9 O -0.54 -12.98 16.67 5.32 0.09 -12.89 16 10 N -0.59 -12.53 2.44 -177.55 -0.43 -12.96 16 11 C 0.23 5.33 4.72 -5.20 -0.02 5.31 16 12 C -0.53 -13.18 6.03 -34.44 -0.21 -13.39 16 13 H 0.06 1.60 7.14 -52.49 -0.37 1.22 16 14 C 0.08 1.92 5.46 -17.82 -0.10 1.82 16 15 N -0.88 -23.43 13.29 55.43 0.74 -22.69 16 16 Si 0.88 20.38 29.54 -169.99 -5.02 15.36 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 20 C 0.17 3.27 5.72 -5.19 -0.03 3.24 16 21 C 0.12 2.38 5.90 -82.59 -0.49 1.89 16 22 C -0.13 -2.30 8.78 -39.44 -0.35 -2.64 16 23 C -0.09 -1.35 10.18 -39.28 -0.40 -1.75 16 24 C -0.18 -2.72 10.11 -39.44 -0.40 -3.12 16 25 C 0.09 1.44 11.18 -17.55 -0.20 1.25 16 26 N -0.46 -9.15 10.27 -9.47 -0.10 -9.25 16 27 C -0.10 -2.10 7.54 -39.02 -0.29 -2.39 16 28 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.05 0.55 7.66 -51.93 -0.40 0.15 16 30 H 0.05 0.62 7.66 -51.93 -0.40 0.22 16 31 H 0.12 1.57 6.28 -52.48 -0.33 1.24 16 32 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 33 H 0.12 2.02 8.06 -52.48 -0.42 1.59 16 34 H 0.05 1.19 5.60 -51.93 -0.29 0.90 16 35 H 0.03 0.82 7.95 -51.93 -0.41 0.40 16 36 H 0.26 6.79 8.31 -40.82 -0.34 6.46 16 37 H 0.09 1.65 7.49 -51.93 -0.39 1.26 16 38 H 0.09 1.46 7.83 -51.93 -0.41 1.05 16 39 H 0.14 2.34 8.06 -52.48 -0.42 1.91 16 40 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 41 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 42 H 0.15 2.03 8.06 -52.49 -0.42 1.61 16 43 H 0.17 4.23 4.86 -52.49 -0.26 3.97 16 LS Contribution 364.27 15.07 5.49 5.49 Total: -1.00 -31.05 364.27 -8.28 -39.33 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.35 Total: 7.90 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.49 Total: -4.23 kcal Atomic # 7 Polarization: -45.11 SS G_CDS: 0.21 Total: -44.90 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: -0.12 Total: -18.95 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -31.05 -8.28 -39.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349434568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.948 kcal (2) G-P(sol) polarization free energy of solvation -31.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds