Wall clock time and date at job start Tue Mar 31 2020 14:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35904 * 117.00457 * 2 1 4 4 C 1.38859 * 119.98361 * 0.02562 * 3 2 1 5 5 C 1.38241 * 120.23938 * 179.97438 * 4 3 2 6 6 C 1.38003 * 120.20722 * 359.74847 * 5 4 3 7 7 C 1.39562 * 119.96763 * 0.50643 * 6 5 4 8 8 C 1.47855 * 120.12299 * 179.77068 * 7 6 5 9 9 O 1.21551 * 120.00204 * 50.09943 * 8 7 6 10 10 N 1.34782 * 119.99952 * 230.10369 * 8 7 6 11 11 C 1.46496 * 120.00313 * 355.00637 * 10 8 7 12 12 C 1.50699 * 109.47001 * 265.67368 * 11 10 8 13 13 H 1.07998 * 120.00086 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99817 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99965 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99935 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.46915 * 89.99827 * 16 14 12 18 18 H 1.48501 * 109.46952 * 209.99915 * 16 14 12 19 19 H 1.48504 * 109.46957 * 330.00044 * 16 14 12 20 20 C 1.46505 * 119.99917 * 175.00148 * 10 8 7 21 21 C 1.50702 * 109.46509 * 90.00168 * 20 10 8 22 22 C 1.38223 * 119.61896 * 94.98360 * 21 20 10 23 23 C 1.38630 * 119.16301 * 180.02562 * 22 21 20 24 24 C 1.38667 * 118.41926 * 359.97438 * 23 22 21 25 25 C 1.38184 * 119.16637 * 0.02562 * 24 23 22 26 26 N 1.31854 * 119.61777 * 274.99621 * 21 20 10 27 27 C 1.38454 * 119.98991 * 179.97438 * 3 2 1 28 28 H 1.08997 * 109.47170 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47038 * 300.00123 * 1 2 3 30 30 H 1.09002 * 109.46809 * 60.00189 * 1 2 3 31 31 H 1.08005 * 119.87705 * 0.02562 * 4 3 2 32 32 H 1.07999 * 119.89427 * 180.02562 * 5 4 3 33 33 H 1.08008 * 120.02114 * 180.25799 * 6 5 4 34 34 H 1.09007 * 109.46713 * 25.66663 * 11 10 8 35 35 H 1.08997 * 109.47400 * 145.66450 * 11 10 8 36 36 H 0.97006 * 119.99609 * 180.02562 * 15 14 12 37 37 H 1.08994 * 109.46917 * 330.00498 * 20 10 8 38 38 H 1.08992 * 109.47208 * 209.99733 * 20 10 8 39 39 H 1.08003 * 120.41476 * 359.97438 * 22 21 20 40 40 H 1.08002 * 120.78631 * 180.02562 * 23 22 21 41 41 H 1.08002 * 120.41753 * 180.02562 * 24 23 22 42 42 H 1.07993 * 119.62003 * 180.27551 * 25 24 23 43 43 H 1.07997 * 120.10113 * 0.04679 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3753 0.0005 5 6 1.9118 3.6098 0.0011 6 6 3.2893 3.6930 0.0063 7 6 4.0581 2.5283 0.0004 8 6 5.5342 2.6135 0.0009 9 8 6.1021 3.3185 0.8120 10 7 6.2502 1.9095 -0.8982 11 6 5.5748 0.9766 -1.8037 12 6 5.6043 -0.4087 -1.2112 13 1 6.0790 -0.5774 -0.2559 14 6 5.0252 -1.4607 -1.8887 15 7 4.4467 -1.2551 -3.0518 16 14 5.0623 -3.1780 -1.1546 17 1 3.8572 -3.3820 -0.3113 18 1 5.0778 -4.1833 -2.2475 19 1 6.2817 -3.3339 -0.3213 20 6 7.7038 2.0772 -0.9701 21 6 8.3694 1.0914 -0.0447 22 6 8.8132 -0.1197 -0.5414 23 6 9.4237 -1.0196 0.3183 24 6 9.5661 -0.6659 1.6516 25 6 9.0976 0.5629 2.0760 26 7 8.5215 1.3942 1.2296 27 6 3.4288 1.2830 0.0005 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 0.2112 2.3162 0.0014 32 1 1.3180 4.5118 0.0019 33 1 3.7723 4.6591 0.0109 34 1 4.5402 1.2903 -1.9429 35 1 6.0855 0.9710 -2.7666 36 1 4.0390 -1.9952 -3.5282 37 1 7.9677 3.0915 -0.6711 38 1 8.0399 1.9004 -1.9917 39 1 8.6852 -0.3621 -1.5861 40 1 9.7806 -1.9732 -0.0419 41 1 10.0372 -1.3423 2.3494 42 1 9.2087 0.8477 3.1118 43 1 4.0183 0.3781 0.0002 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000349434568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:44 Heat of formation + Delta-G solvation = -16.596425 kcal Electronic energy + Delta-G solvation = -28149.866201 eV Core-core repulsion = 24353.197711 eV Total energy + Delta-G solvation = -3796.668489 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.57785 -40.93624 -40.12422 -37.93324 -36.88537 -34.67730 -33.36512 -32.96876 -31.82378 -31.09439 -29.43775 -28.20552 -27.56219 -25.06227 -24.35907 -24.05313 -23.43464 -22.64419 -20.56446 -18.82292 -18.64179 -17.89457 -17.55221 -17.25601 -16.92702 -16.87193 -16.76288 -16.54419 -16.42999 -16.19981 -15.44213 -14.94684 -14.61992 -14.50069 -14.36808 -14.07703 -13.98738 -13.83882 -13.56059 -13.35631 -13.12641 -12.99104 -12.75936 -12.65627 -12.63780 -12.48077 -12.13825 -11.92915 -11.77407 -11.70801 -10.85935 -10.68021 -10.57159 -10.30523 -9.86993 -9.78569 -9.47587 -9.12338 -8.16404 -6.24804 0.05744 0.26373 0.49272 0.54317 1.36310 1.41396 1.46852 1.78904 2.24566 2.41316 2.51348 2.86114 3.08332 3.15079 3.47287 3.68618 3.92525 3.94830 4.05950 4.14882 4.26953 4.32371 4.33548 4.36614 4.42433 4.51740 4.58078 4.60808 4.65515 4.71485 4.82002 4.90077 4.94817 5.11223 5.25069 5.29707 5.33279 5.35963 5.43019 5.57435 5.69436 5.79505 5.82569 5.89373 6.10302 6.52074 6.57099 6.82965 7.21599 7.26584 7.43840 8.89413 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.010508 B = 0.005868 C = 0.004373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2664.013844 B = 4770.812122 C = 6401.307805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.343 6.343 3 C 0.105 3.895 4 C -0.186 4.186 5 C -0.084 4.084 6 C -0.123 4.123 7 C -0.105 4.105 8 C 0.554 3.446 9 O -0.567 6.567 10 N -0.586 5.586 11 C 0.249 3.751 12 C -0.517 4.517 13 H 0.043 0.957 14 C 0.039 3.961 15 N -0.908 5.908 16 Si 0.932 3.068 17 H -0.284 1.284 18 H -0.278 1.278 19 H -0.269 1.269 20 C 0.169 3.831 21 C 0.102 3.898 22 C -0.143 4.143 23 C -0.089 4.089 24 C -0.169 4.169 25 C 0.072 3.928 26 N -0.497 5.497 27 C -0.128 4.128 28 H 0.109 0.891 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.163 0.837 32 H 0.170 0.830 33 H 0.135 0.865 34 H 0.032 0.968 35 H 0.026 0.974 36 H 0.265 0.735 37 H 0.083 0.917 38 H 0.108 0.892 39 H 0.136 0.864 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.170 0.830 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.900 2.674 4.120 5.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.257 6.257 3 C 0.060 3.940 4 C -0.204 4.204 5 C -0.101 4.101 6 C -0.142 4.142 7 C -0.108 4.108 8 C 0.343 3.657 9 O -0.448 6.448 10 N -0.315 5.315 11 C 0.129 3.871 12 C -0.556 4.556 13 H 0.061 0.939 14 C -0.162 4.162 15 N -0.546 5.546 16 Si 0.759 3.241 17 H -0.210 1.210 18 H -0.204 1.204 19 H -0.194 1.194 20 C 0.045 3.955 21 C -0.037 4.037 22 C -0.163 4.163 23 C -0.115 4.115 24 C -0.189 4.189 25 C -0.086 4.086 26 N -0.207 5.207 27 C -0.147 4.147 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.188 0.812 33 H 0.153 0.847 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.074 0.926 37 H 0.101 0.899 38 H 0.126 0.874 39 H 0.154 0.846 40 H 0.173 0.827 41 H 0.183 0.817 42 H 0.187 0.813 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -1.909 3.559 4.639 6.150 hybrid contribution 0.115 -2.028 -0.182 2.039 sum -1.794 1.531 4.457 5.042 Atomic orbital electron populations 1.23340 0.76525 1.05216 1.02503 1.86134 1.23558 1.27191 1.88827 1.19044 0.91799 0.85374 0.97796 1.21690 1.01350 0.91387 1.06011 1.21183 0.93246 0.98279 0.97434 1.21212 0.94651 0.96734 1.01582 1.19704 0.92666 0.94369 1.04037 1.18620 0.87500 0.79205 0.80388 1.90703 1.72491 1.42908 1.38706 1.48102 1.06452 1.41064 1.35909 1.19310 0.92955 0.86755 0.88080 1.21253 1.36483 0.92998 1.04851 0.93852 1.25342 0.94644 1.01329 0.94919 1.69985 1.37148 1.32910 1.14602 0.85941 0.78484 0.81309 0.78407 1.21005 1.20365 1.19355 1.20267 0.79345 0.97664 0.98175 1.21561 0.95500 0.95145 0.91448 1.22079 0.97945 0.94074 1.02208 1.21904 0.96171 0.99672 0.93772 1.22429 1.01372 0.98106 0.96959 1.23157 0.94383 0.91131 0.99892 1.67519 1.13183 1.36175 1.03795 1.21269 0.93328 0.98896 1.01230 0.87236 0.90811 0.91529 0.81998 0.81248 0.84732 0.95027 0.95626 0.92577 0.89907 0.87396 0.84592 0.82688 0.81728 0.81323 0.84654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 9.81 113.37 1.11 1.55 16 2 O -0.34 -12.97 10.49 -92.47 -0.97 -13.94 16 3 C 0.10 4.03 6.68 22.47 0.15 4.18 16 4 C -0.19 -5.41 9.03 22.42 0.20 -5.21 16 5 C -0.08 -2.31 10.03 22.21 0.22 -2.08 16 6 C -0.12 -4.26 9.73 22.53 0.22 -4.04 16 7 C -0.10 -4.50 4.87 -20.10 -0.10 -4.59 16 8 C 0.55 25.77 7.21 86.79 0.63 26.39 16 9 O -0.57 -28.30 16.67 -3.88 -0.06 -28.36 16 10 N -0.59 -26.25 2.44 -833.91 -2.04 -28.29 16 11 C 0.25 12.08 4.72 85.63 0.40 12.49 16 12 C -0.52 -26.50 6.03 25.60 0.15 -26.35 16 13 H 0.04 2.36 7.14 -2.91 -0.02 2.34 16 14 C 0.04 2.04 5.46 84.66 0.46 2.50 16 15 N -0.91 -49.29 13.29 21.45 0.28 -49.01 16 16 Si 0.93 42.30 29.54 68.60 2.03 44.32 16 17 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 20 C 0.17 6.69 5.72 85.63 0.49 7.18 16 21 C 0.10 4.04 5.90 42.55 0.25 4.29 16 22 C -0.14 -5.09 8.78 22.36 0.20 -4.90 16 23 C -0.09 -2.69 10.18 22.47 0.23 -2.47 16 24 C -0.17 -4.71 10.11 22.36 0.23 -4.48 16 25 C 0.07 2.35 11.18 84.67 0.95 3.30 16 26 N -0.50 -20.24 10.27 -183.89 -1.89 -22.13 16 27 C -0.13 -5.78 7.54 22.63 0.17 -5.61 16 28 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.07 1.38 7.66 -2.39 -0.02 1.36 16 30 H 0.07 1.38 7.66 -2.39 -0.02 1.36 16 31 H 0.16 3.36 6.28 -2.91 -0.02 3.34 16 32 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 33 H 0.13 4.27 8.06 -2.91 -0.02 4.25 16 34 H 0.03 1.66 5.60 -2.38 -0.01 1.64 16 35 H 0.03 1.27 7.95 -2.39 -0.02 1.26 16 36 H 0.26 13.80 8.31 -92.70 -0.77 13.03 16 37 H 0.08 3.30 7.49 -2.39 -0.02 3.28 16 38 H 0.11 3.70 7.83 -2.39 -0.02 3.68 16 39 H 0.14 4.74 8.06 -2.91 -0.02 4.72 16 40 H 0.16 3.71 8.06 -2.91 -0.02 3.69 16 41 H 0.17 3.22 8.06 -2.91 -0.02 3.19 16 42 H 0.17 4.50 8.06 -2.91 -0.02 4.48 16 43 H 0.14 7.05 4.86 -2.91 -0.01 7.04 16 Total: -1.00 -70.86 364.27 4.35 -66.52 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 1.03 Total: 28.75 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: 5.96 Total: 2.14 kcal Atomic # 7 Polarization: -95.79 SS G_CDS: -3.64 Total: -99.43 kcal Atomic # 8 Polarization: -41.27 SS G_CDS: -1.03 Total: -42.31 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.32 kcal Total: -70.86 4.35 -66.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000349434568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.920 kcal (2) G-P(sol) polarization free energy of solvation -70.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds