Wall clock time and date at job start Tue Mar 31 2020 14:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86810 * 119.99641 * 2 1 4 4 H 1.48502 * 109.46827 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46906 * 299.99581 * 3 2 1 6 6 H 1.48494 * 109.46961 * 59.99944 * 3 2 1 7 7 C 1.37869 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47427 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47427 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46734 * 180.02562 * 12 11 10 14 14 N 1.31133 * 126.55308 * 90.00021 * 13 12 11 15 15 C 1.34492 * 105.61245 * 180.02562 * 14 13 12 16 16 C 1.50701 * 126.28340 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47506 * 89.99870 * 16 15 14 18 18 C 1.34227 * 126.56393 * 264.95331 * 17 16 15 19 19 N 1.36914 * 109.91540 * 180.02562 * 18 17 16 20 20 H 0.96996 * 124.99011 * 179.97438 * 19 18 17 21 21 C 1.37425 * 110.01934 * 0.02562 * 19 18 17 22 22 N 1.32661 * 133.18565 * 180.02562 * 21 19 18 23 23 C 1.31584 * 121.66805 * 179.97438 * 22 21 19 24 24 C 1.38670 * 121.58578 * 359.97438 * 23 22 21 25 25 C 1.38205 * 119.40680 * 359.97438 * 24 23 22 26 26 C 1.39692 * 118.04135 * 359.97438 * 25 24 23 27 27 N 1.29941 * 107.42820 * 0.23518 * 15 14 13 28 28 O 1.21304 * 110.24886 * 359.58716 * 27 15 14 29 29 H 0.96998 * 119.99863 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46843 * 59.99847 * 9 7 2 31 31 H 1.09000 * 109.46858 * 300.00074 * 9 7 2 32 32 H 1.09004 * 109.47412 * 59.99978 * 10 9 7 33 33 H 1.09001 * 109.46987 * 300.00334 * 10 9 7 34 34 H 1.09002 * 109.46936 * 60.00448 * 11 10 9 35 35 H 1.08990 * 109.47030 * 299.99891 * 11 10 9 36 36 H 1.08999 * 109.47198 * 60.00019 * 12 11 10 37 37 H 1.09000 * 109.47189 * 299.99786 * 12 11 10 38 38 H 1.09002 * 109.46992 * 329.99040 * 16 15 14 39 39 H 1.09003 * 109.46640 * 209.99786 * 16 15 14 40 40 H 1.08003 * 125.04741 * 0.03883 * 18 17 16 41 41 H 1.07997 * 119.20955 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.29876 * 180.27165 * 24 23 22 43 43 H 1.07999 * 120.97404 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0025 12 6 2.4747 -6.1499 0.0031 13 6 1.7212 -7.4550 0.0031 14 7 1.3312 -8.1316 -1.0503 15 6 0.7024 -9.2190 -0.5696 16 6 0.0685 -10.3162 -1.3854 17 6 1.0873 -11.3929 -1.6570 18 6 1.8540 -11.5103 -2.7525 19 7 2.6581 -12.6131 -2.6430 20 1 3.2981 -12.9033 -3.3115 21 6 2.4242 -13.2490 -1.4474 22 7 2.9346 -14.3350 -0.8816 23 6 2.5349 -14.7505 0.3012 24 6 1.5594 -14.0734 1.0174 25 6 0.9909 -12.9341 0.4800 26 6 1.4310 -12.5105 -0.7763 27 7 0.7371 -9.1471 0.7273 28 8 1.3225 -8.1438 1.0767 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8713 -3.6039 0.8923 33 1 2.8727 -3.6046 -0.8877 34 1 0.8542 -5.0455 -0.8878 35 1 0.8534 -5.0442 0.8922 36 1 3.1013 -6.0917 0.8931 37 1 3.1014 -6.0926 -0.8869 38 1 -0.2880 -9.9065 -2.3305 39 1 -0.7704 -10.7405 -0.8339 40 1 1.8391 -10.8350 -3.5952 41 1 2.9772 -15.6402 0.7244 42 1 1.2501 -14.4305 1.9886 43 1 0.2295 -12.3869 1.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350148917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:40 Heat of formation + Delta-G solvation = 113.122673 kcal Electronic energy + Delta-G solvation = -25387.663153 eV Core-core repulsion = 21628.912457 eV Total energy + Delta-G solvation = -3758.750696 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.51185 -41.89415 -38.21887 -36.30597 -35.80446 -33.99578 -33.19610 -32.16281 -31.23894 -29.96128 -29.36576 -27.58150 -25.77778 -24.04671 -23.66020 -22.86923 -22.67864 -21.28748 -20.18884 -19.75948 -18.62487 -17.91229 -17.38413 -17.02645 -16.30632 -16.22388 -15.53752 -15.17288 -15.03930 -14.88256 -14.43698 -14.10889 -13.74241 -13.57881 -13.42594 -13.02133 -12.93740 -12.81180 -12.57388 -12.23107 -12.07686 -11.87411 -11.69724 -11.38552 -11.06714 -10.97415 -10.68461 -10.65725 -10.57980 -10.52719 -9.93373 -9.71917 -9.70385 -9.31048 -9.03840 -8.80865 -8.38455 -8.35511 -6.00261 -4.02726 0.65411 1.03350 1.20889 2.07971 2.33987 2.44042 2.89824 3.30827 3.38435 3.42208 3.54333 3.70860 4.02471 4.15783 4.33037 4.36960 4.45654 4.64002 4.75110 4.90353 4.99939 5.10629 5.19094 5.21517 5.23771 5.30614 5.35791 5.41353 5.57392 5.64585 5.83648 5.90981 5.94786 6.04580 6.07348 6.07568 6.15346 6.35002 6.58338 6.67687 6.82795 6.90444 7.09812 7.66792 7.67579 7.81189 7.99935 8.21600 8.41894 9.04953 9.61587 11.11070 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.001767 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.790658 B =15842.409167 C =16037.756106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.115 4.115 12 C -0.031 4.031 13 C 0.198 3.802 14 N -0.485 5.485 15 C 0.175 3.825 16 C 0.049 3.951 17 C -0.167 4.167 18 C 0.086 3.914 19 N -0.580 5.580 20 H 0.421 0.579 21 C 0.284 3.716 22 N -0.501 5.501 23 C 0.136 3.864 24 C -0.202 4.202 25 C -0.023 4.023 26 C -0.140 4.140 27 N -0.387 5.387 28 O 0.072 5.928 29 H 0.260 0.740 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.183 0.817 41 H 0.160 0.840 42 H 0.138 0.862 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.932 -29.518 -2.732 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.559 4.559 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.146 4.146 11 C -0.153 4.153 12 C -0.070 4.070 13 C -0.022 4.022 14 N -0.219 5.219 15 C -0.099 4.099 16 C 0.010 3.990 17 C -0.176 4.176 18 C -0.041 4.041 19 N -0.186 5.186 20 H 0.259 0.741 21 C 0.051 3.949 22 N -0.214 5.214 23 C -0.029 4.029 24 C -0.223 4.223 25 C -0.050 4.050 26 C -0.147 4.147 27 N -0.096 5.096 28 O 0.015 5.985 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.034 0.966 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.116 0.884 40 H 0.200 0.800 41 H 0.178 0.822 42 H 0.156 0.844 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 3.104 -30.539 -3.252 30.868 hybrid contribution 0.190 1.412 0.202 1.439 sum 3.294 -29.127 -3.050 29.471 Atomic orbital electron populations 1.69975 1.06062 1.26474 1.50972 1.25037 0.94846 0.99293 0.95384 0.86551 0.80115 0.83855 0.77563 1.19732 1.21047 1.21044 1.21301 0.93090 0.91082 1.50387 0.92580 1.19109 0.94042 0.91309 0.97330 1.21633 0.99172 0.93100 1.00722 1.21729 0.97498 0.93308 1.02801 1.20522 0.97174 0.83603 1.05683 1.29109 0.95541 0.97288 0.80305 1.71882 1.15897 1.05150 1.28968 1.25659 0.99593 0.96167 0.88451 1.18108 0.94440 0.87378 0.99083 1.19773 1.04142 0.98247 0.95426 1.21787 0.92335 0.89678 1.00301 1.41543 1.36979 1.23552 1.16528 0.74071 1.18388 0.95417 0.92860 0.88247 1.66480 1.28896 1.13349 1.12717 1.22455 0.93667 0.98360 0.88430 1.21883 1.00534 0.97707 1.02224 1.21019 0.97167 0.94387 0.92386 1.19717 1.00611 0.97954 0.96448 1.74573 1.15646 1.03729 1.15686 1.85288 1.52033 1.25171 1.35978 0.93071 0.96550 0.96551 0.92930 0.92940 0.91470 0.91656 0.88187 0.87404 0.87595 0.88362 0.79962 0.82237 0.84444 0.84732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 2 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.47 9.11 -34.44 -0.31 -14.78 16 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 9 C 0.02 0.48 4.97 -27.89 -0.14 0.34 16 10 C -0.11 -2.04 5.15 -26.74 -0.14 -2.18 16 11 C -0.11 -1.76 5.20 -26.73 -0.14 -1.90 16 12 C -0.03 -0.37 5.84 -27.88 -0.16 -0.54 16 13 C 0.20 2.68 7.77 -13.06 -0.10 2.57 16 14 N -0.49 -6.77 11.55 -9.87 -0.11 -6.89 16 15 C 0.17 2.26 7.45 -156.38 -1.17 1.10 16 16 C 0.05 0.47 6.38 -29.03 -0.19 0.28 16 17 C -0.17 -1.63 5.55 -102.76 -0.57 -2.20 16 18 C 0.09 0.68 11.74 -16.70 -0.20 0.48 16 19 N -0.58 -4.79 6.05 -12.14 -0.07 -4.86 16 20 H 0.42 2.34 8.96 -40.82 -0.37 1.98 16 21 C 0.28 3.12 8.43 -155.68 -1.31 1.81 16 22 N -0.50 -5.53 10.39 -12.27 -0.13 -5.66 16 23 C 0.14 1.18 11.14 -17.50 -0.20 0.99 16 24 C -0.20 -1.65 10.10 -39.43 -0.40 -2.05 16 25 C -0.02 -0.23 10.22 -39.05 -0.40 -0.63 16 26 C -0.14 -1.54 6.37 -105.11 -0.67 -2.20 16 27 N -0.39 -5.51 12.16 30.89 0.38 -5.13 16 28 O 0.07 1.03 11.31 18.11 0.20 1.24 16 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.11 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.18 0.88 8.06 -52.48 -0.42 0.46 16 41 H 0.16 0.86 8.06 -52.49 -0.42 0.43 16 42 H 0.14 0.74 8.06 -52.49 -0.42 0.32 16 43 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -34.58 375.15 -10.37 -44.96 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: -5.83 Total: -2.26 kcal Atomic # 6 Polarization: -11.24 SS G_CDS: -6.18 Total: -17.43 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.80 Total: -48.57 kcal Atomic # 8 Polarization: 1.03 SS G_CDS: 0.20 Total: 1.24 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.58 -10.37 -44.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350148917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.081 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds