Wall clock time and date at job start Tue Mar 31 2020 14:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86810 * 119.99641 * 2 1 4 4 H 1.48502 * 109.46827 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46906 * 299.99581 * 3 2 1 6 6 H 1.48494 * 109.46961 * 59.99944 * 3 2 1 7 7 C 1.37869 * 120.00448 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00288 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99891 * 0.02562 * 7 2 1 10 10 C 1.52990 * 109.47427 * 180.02562 * 9 7 2 11 11 C 1.53001 * 109.47427 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47030 * 179.97438 * 11 10 9 13 13 C 1.50701 * 109.46734 * 180.02562 * 12 11 10 14 14 N 1.31133 * 126.55308 * 90.00021 * 13 12 11 15 15 C 1.34492 * 105.61245 * 180.02562 * 14 13 12 16 16 C 1.50701 * 126.28340 * 179.97438 * 15 14 13 17 17 C 1.50700 * 109.47506 * 89.99870 * 16 15 14 18 18 C 1.34227 * 126.56393 * 264.95331 * 17 16 15 19 19 N 1.36914 * 109.91540 * 180.02562 * 18 17 16 20 20 H 0.96996 * 124.99011 * 179.97438 * 19 18 17 21 21 C 1.37425 * 110.01934 * 0.02562 * 19 18 17 22 22 N 1.32661 * 133.18565 * 180.02562 * 21 19 18 23 23 C 1.31584 * 121.66805 * 179.97438 * 22 21 19 24 24 C 1.38670 * 121.58578 * 359.97438 * 23 22 21 25 25 C 1.38205 * 119.40680 * 359.97438 * 24 23 22 26 26 C 1.39692 * 118.04135 * 359.97438 * 25 24 23 27 27 N 1.29941 * 107.42820 * 0.23518 * 15 14 13 28 28 O 1.21304 * 110.24886 * 359.58716 * 27 15 14 29 29 H 0.96998 * 119.99863 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.46843 * 59.99847 * 9 7 2 31 31 H 1.09000 * 109.46858 * 300.00074 * 9 7 2 32 32 H 1.09004 * 109.47412 * 59.99978 * 10 9 7 33 33 H 1.09001 * 109.46987 * 300.00334 * 10 9 7 34 34 H 1.09002 * 109.46936 * 60.00448 * 11 10 9 35 35 H 1.08990 * 109.47030 * 299.99891 * 11 10 9 36 36 H 1.08999 * 109.47198 * 60.00019 * 12 11 10 37 37 H 1.09000 * 109.47189 * 299.99786 * 12 11 10 38 38 H 1.09002 * 109.46992 * 329.99040 * 16 15 14 39 39 H 1.09003 * 109.46640 * 209.99786 * 16 15 14 40 40 H 1.08003 * 125.04741 * 0.03883 * 18 17 16 41 41 H 1.07997 * 119.20955 * 179.97438 * 23 22 21 42 42 H 1.07995 * 120.29876 * 180.27165 * 24 23 22 43 43 H 1.07999 * 120.97404 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0018 11 6 1.4804 -4.9870 0.0025 12 6 2.4747 -6.1499 0.0031 13 6 1.7212 -7.4550 0.0031 14 7 1.3312 -8.1316 -1.0503 15 6 0.7024 -9.2190 -0.5696 16 6 0.0685 -10.3162 -1.3854 17 6 1.0873 -11.3929 -1.6570 18 6 1.8540 -11.5103 -2.7525 19 7 2.6581 -12.6131 -2.6430 20 1 3.2981 -12.9033 -3.3115 21 6 2.4242 -13.2490 -1.4474 22 7 2.9346 -14.3350 -0.8816 23 6 2.5349 -14.7505 0.3012 24 6 1.5594 -14.0734 1.0174 25 6 0.9909 -12.9341 0.4800 26 6 1.4310 -12.5105 -0.7763 27 7 0.7371 -9.1471 0.7273 28 8 1.3225 -8.1438 1.0767 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5570 -0.8897 31 1 0.6241 -2.5567 0.8903 32 1 2.8713 -3.6039 0.8923 33 1 2.8727 -3.6046 -0.8877 34 1 0.8542 -5.0455 -0.8878 35 1 0.8534 -5.0442 0.8922 36 1 3.1013 -6.0917 0.8931 37 1 3.1014 -6.0926 -0.8869 38 1 -0.2880 -9.9065 -2.3305 39 1 -0.7704 -10.7405 -0.8339 40 1 1.8391 -10.8350 -3.5952 41 1 2.9772 -15.6402 0.7244 42 1 1.2501 -14.4305 1.9886 43 1 0.2295 -12.3869 1.0160 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350148917.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:39 Heat of formation + Delta-G solvation = 92.171344 kcal Electronic energy + Delta-G solvation = -25388.571671 eV Core-core repulsion = 21628.912457 eV Total energy + Delta-G solvation = -3759.659214 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -46.54092 -42.54604 -38.87106 -37.42420 -36.99221 -35.31542 -34.44522 -33.46880 -32.14120 -30.87612 -30.60454 -28.32442 -27.45918 -24.90702 -24.68162 -24.08291 -23.53065 -22.39116 -21.76624 -20.50203 -19.32280 -18.95355 -18.39247 -18.30554 -17.69076 -16.95822 -16.55387 -16.35403 -16.27159 -15.86556 -15.62890 -15.05919 -14.63510 -14.43134 -14.29962 -14.18037 -14.11418 -13.69824 -13.66890 -13.46831 -13.30273 -13.22501 -12.84101 -12.58039 -12.49520 -12.28332 -12.19580 -12.13335 -11.96584 -11.40036 -11.34293 -11.33291 -11.15097 -10.74559 -10.52127 -10.41507 -9.47190 -9.04598 -8.16617 -6.27193 -0.01503 0.16967 0.36283 1.20043 1.42691 1.43109 1.56184 1.57168 1.81966 1.88710 2.43950 2.74443 2.89401 3.14905 3.17043 3.54477 3.67392 3.72350 3.94634 4.04081 4.07531 4.10899 4.19703 4.35577 4.45152 4.46798 4.57389 4.66719 4.68075 4.77694 4.82004 4.89213 4.92604 4.95183 5.03404 5.20364 5.29244 5.34672 5.35591 5.40390 5.51248 5.60130 5.83264 5.92632 5.93002 6.29486 6.34546 6.91888 7.00531 7.19425 7.42347 8.95402 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.031496 B = 0.001767 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.790658 B =15842.409167 C =16037.756106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.104 4.104 12 C -0.020 4.020 13 C 0.195 3.805 14 N -0.497 5.497 15 C 0.177 3.823 16 C 0.052 3.948 17 C -0.192 4.192 18 C 0.100 3.900 19 N -0.573 5.573 20 H 0.432 0.568 21 C 0.256 3.744 22 N -0.524 5.524 23 C 0.127 3.873 24 C -0.197 4.197 25 C -0.043 4.043 26 C -0.161 4.161 27 N -0.406 5.406 28 O 0.060 5.940 29 H 0.262 0.738 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.064 0.936 33 H 0.062 0.938 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.124 0.876 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.104 0.896 40 H 0.215 0.785 41 H 0.190 0.810 42 H 0.165 0.835 43 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -30.031 -3.088 30.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.202 4.202 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.206 1.206 6 H -0.207 1.207 7 C -0.577 4.577 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.143 4.143 12 C -0.059 4.059 13 C -0.025 4.025 14 N -0.232 5.232 15 C -0.096 4.096 16 C 0.013 3.987 17 C -0.200 4.200 18 C -0.027 4.027 19 N -0.180 5.180 20 H 0.272 0.728 21 C 0.024 3.976 22 N -0.237 5.237 23 C -0.038 4.038 24 C -0.218 4.218 25 C -0.069 4.069 26 C -0.168 4.168 27 N -0.117 5.117 28 O 0.006 5.994 29 H 0.071 0.929 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.122 0.878 40 H 0.231 0.769 41 H 0.207 0.793 42 H 0.183 0.817 43 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.726 -31.062 -3.607 31.626 hybrid contribution -0.342 1.508 0.316 1.578 sum 4.384 -29.554 -3.292 30.058 Atomic orbital electron populations 1.70114 1.07874 1.27558 1.52142 1.26012 0.95745 1.03476 0.95000 0.85411 0.79264 0.78872 0.77571 1.18255 1.20636 1.20653 1.21803 0.93778 0.92347 1.49776 0.91692 1.19067 0.94708 0.93469 0.94683 1.21420 0.97926 0.92219 1.01778 1.21491 0.97697 0.93074 1.02004 1.20457 0.96214 0.81414 1.07770 1.29332 0.95344 0.97592 0.80216 1.71898 1.16335 1.05643 1.29277 1.26283 0.98654 0.96334 0.88342 1.18258 0.94381 0.86504 0.99540 1.19844 1.05455 0.98517 0.96230 1.22299 0.90786 0.89219 1.00440 1.41618 1.37005 1.23322 1.16089 0.72764 1.18695 0.96177 0.93431 0.89342 1.66528 1.29657 1.13753 1.13799 1.23044 0.93639 0.99171 0.87907 1.22217 0.99699 0.96830 1.03075 1.21246 0.97817 0.95301 0.92558 1.20031 1.01012 0.98623 0.97111 1.74573 1.16526 1.04103 1.16528 1.85265 1.52367 1.25426 1.36329 0.92947 0.99306 0.99214 0.91692 0.91917 0.92608 0.92316 0.85773 0.85740 0.85650 0.87763 0.76869 0.79306 0.81729 0.84498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.02 13.29 21.44 0.28 -56.73 16 2 C -0.01 -0.29 5.46 84.65 0.46 0.17 16 3 Si 0.96 43.78 29.54 68.60 2.03 45.81 16 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 7 C -0.54 -30.00 9.11 25.60 0.23 -29.76 16 8 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 9 C 0.02 0.91 4.97 29.85 0.15 1.06 16 10 C -0.10 -3.50 5.15 30.59 0.16 -3.35 16 11 C -0.10 -3.10 5.20 30.60 0.16 -2.94 16 12 C -0.02 -0.44 5.84 29.85 0.17 -0.27 16 13 C 0.20 5.05 7.77 88.38 0.69 5.74 16 14 N -0.50 -13.28 11.55 -303.22 -3.50 -16.78 16 15 C 0.18 4.45 7.45 138.47 1.03 5.48 16 16 C 0.05 0.94 6.38 29.10 0.19 1.12 16 17 C -0.19 -3.57 5.55 -18.66 -0.10 -3.67 16 18 C 0.10 1.41 11.74 82.98 0.97 2.39 16 19 N -0.57 -8.86 6.05 -192.33 -1.16 -10.03 16 20 H 0.43 4.31 8.96 -92.71 -0.83 3.48 16 21 C 0.26 5.52 8.43 133.92 1.13 6.65 16 22 N -0.52 -11.29 10.39 -192.73 -2.00 -13.29 16 23 C 0.13 2.07 11.14 84.83 0.95 3.02 16 24 C -0.20 -3.02 10.10 22.37 0.23 -2.79 16 25 C -0.04 -0.83 10.22 22.61 0.23 -0.60 16 26 C -0.16 -3.47 6.37 -20.18 -0.13 -3.60 16 27 N -0.41 -11.41 12.16 -60.34 -0.73 -12.15 16 28 O 0.06 1.69 11.31 74.87 0.85 2.54 16 29 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 30 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 31 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 32 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.13 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.21 1.47 8.06 -2.91 -0.02 1.44 16 41 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 42 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 43 H 0.14 2.43 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -75.86 375.15 2.48 -73.38 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.21 Total: 8.59 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 6.51 Total: -21.35 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -7.12 Total: -108.98 kcal Atomic # 8 Polarization: 1.69 SS G_CDS: 0.85 Total: 2.54 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -75.86 2.48 -73.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350148917.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.555 kcal (2) G-P(sol) polarization free energy of solvation -75.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds