Wall clock time and date at job start Tue Mar 31 2020 14:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48500 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99704 * 3 2 1 6 6 H 1.48503 * 109.46986 * 59.99393 * 3 2 1 7 7 C 1.37872 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47707 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47283 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46942 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.46986 * 179.97438 * 12 11 10 14 14 N 1.31134 * 126.54821 * 90.00034 * 13 12 11 15 15 C 1.34492 * 105.61385 * 180.02562 * 14 13 12 16 16 C 1.50703 * 126.28597 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47405 * 89.99715 * 16 15 14 18 18 C 1.39688 * 119.09121 * 89.99869 * 17 16 15 19 19 C 1.35659 * 121.72750 * 179.97438 * 18 17 16 20 20 C 1.41134 * 119.53409 * 0.02562 * 19 18 17 21 21 C 1.38237 * 134.81934 * 179.97438 * 20 19 18 22 22 N 1.33989 * 107.90968 * 179.97438 * 21 20 19 23 23 H 0.96994 * 125.02597 * 180.02562 * 22 21 20 24 24 N 1.39959 * 109.95144 * 0.02562 * 22 21 20 25 25 C 1.32057 * 108.96113 * 0.02562 * 24 22 21 26 26 C 1.35635 * 119.09312 * 269.72879 * 17 16 15 27 27 N 1.29951 * 107.42553 * 359.97438 * 15 14 13 28 28 O 1.21300 * 110.25010 * 359.97438 * 27 15 14 29 29 H 0.96995 * 120.00193 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46995 * 59.99954 * 9 7 2 31 31 H 1.09004 * 109.47468 * 300.00661 * 9 7 2 32 32 H 1.09007 * 109.46809 * 60.00586 * 10 9 7 33 33 H 1.08992 * 109.47285 * 300.00617 * 10 9 7 34 34 H 1.08992 * 109.47223 * 60.00564 * 11 10 9 35 35 H 1.09004 * 109.47234 * 300.00041 * 11 10 9 36 36 H 1.09005 * 109.47125 * 59.99868 * 12 11 10 37 37 H 1.08999 * 109.46907 * 300.00411 * 12 11 10 38 38 H 1.09006 * 109.46887 * 209.99813 * 16 15 14 39 39 H 1.09002 * 109.46861 * 329.99190 * 16 15 14 40 40 H 1.07997 * 119.13632 * 0.02562 * 18 17 16 41 41 H 1.07998 * 120.23271 * 180.02562 * 19 18 17 42 42 H 1.08002 * 126.04996 * 359.97438 * 21 20 19 43 43 H 1.07993 * 120.20090 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4746 -6.1500 0.0005 13 6 1.7212 -7.4551 0.0005 14 7 1.3311 -8.1316 -1.0529 15 6 0.7024 -9.2191 -0.5724 16 6 0.0695 -10.3167 -1.3883 17 6 1.0888 -11.3932 -1.6588 18 6 1.2167 -12.4501 -0.7544 19 6 2.1160 -13.4476 -0.9454 20 6 2.9487 -13.4249 -2.0846 21 6 3.9432 -14.2466 -2.5812 22 7 4.3883 -13.7098 -3.7254 23 1 5.0882 -14.0859 -4.2815 24 7 3.6938 -12.5259 -3.9993 25 6 2.8150 -12.3115 -3.0371 26 6 1.8529 -11.3121 -2.7765 27 7 0.7419 -9.1500 0.7247 28 8 1.3235 -8.1445 1.0741 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.8719 -3.6043 0.8906 33 1 2.8720 -3.6043 -0.8893 34 1 0.8541 -5.0446 -0.8903 35 1 0.8533 -5.0451 0.8897 36 1 3.1007 -6.0923 0.8910 37 1 3.1020 -6.0921 -0.8890 38 1 -0.7698 -10.7412 -0.8373 39 1 -0.2865 -9.9075 -2.3338 40 1 0.5824 -12.4741 0.1194 41 1 2.1942 -14.2535 -0.2306 42 1 4.2987 -15.1598 -2.1273 43 1 1.7293 -10.4854 -3.4602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000350268270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:13 Heat of formation + Delta-G solvation = 135.111367 kcal Electronic energy + Delta-G solvation = -25180.079575 eV Core-core repulsion = 21422.282380 eV Total energy + Delta-G solvation = -3757.797195 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.50103 -41.61750 -38.24083 -36.15116 -35.56285 -33.59819 -32.67379 -32.38002 -31.57458 -29.38503 -29.20912 -28.18313 -25.75247 -24.23916 -23.56013 -22.58568 -21.75665 -21.04923 -20.78039 -20.14698 -18.47758 -17.97829 -17.38818 -16.98372 -16.20149 -15.88687 -15.35389 -15.23710 -15.00859 -14.78864 -14.45042 -14.30695 -14.11194 -13.50411 -12.98742 -12.87386 -12.59562 -12.37780 -12.12446 -12.04529 -12.00029 -11.94660 -11.66539 -11.27579 -11.03867 -10.94763 -10.69902 -10.66628 -10.62959 -10.54898 -10.50421 -9.88109 -9.68841 -9.28341 -9.05271 -9.01266 -8.33156 -7.99193 -5.97924 -4.00270 0.23121 1.20211 1.42033 2.07289 2.25169 2.32055 2.91378 3.32693 3.37451 3.40215 3.44153 3.76104 3.87946 4.06042 4.18884 4.47768 4.53636 4.72873 4.80729 4.89836 5.04207 5.14136 5.22969 5.23786 5.27540 5.32849 5.38043 5.43751 5.62832 5.80365 5.89400 5.94008 6.07701 6.09616 6.10875 6.15072 6.33712 6.38429 6.51577 6.64117 6.71082 6.86092 7.12862 7.19335 7.70228 7.84063 8.02440 8.22750 8.44489 9.07407 9.63900 11.13447 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023126 B = 0.001788 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.455715 B =15659.358002 C =16313.484828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.520 4.520 8 H 0.056 0.944 9 C 0.019 3.981 10 C -0.109 4.109 11 C -0.115 4.115 12 C -0.031 4.031 13 C 0.199 3.801 14 N -0.483 5.483 15 C 0.174 3.826 16 C 0.011 3.989 17 C -0.043 4.043 18 C -0.140 4.140 19 C -0.046 4.046 20 C -0.207 4.207 21 C 0.080 3.920 22 N -0.426 5.426 23 H 0.444 0.556 24 N -0.302 5.302 25 C 0.105 3.895 26 C -0.084 4.084 27 N -0.386 5.386 28 O 0.074 5.926 29 H 0.259 0.741 30 H 0.016 0.984 31 H 0.016 0.984 32 H 0.052 0.948 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.188 0.812 43 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.820 -32.816 -3.342 33.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.146 4.146 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.558 4.558 8 H 0.074 0.926 9 C -0.018 4.018 10 C -0.146 4.146 11 C -0.154 4.154 12 C -0.070 4.070 13 C -0.021 4.021 14 N -0.216 5.216 15 C -0.099 4.099 16 C -0.028 4.028 17 C -0.049 4.049 18 C -0.159 4.159 19 C -0.066 4.066 20 C -0.217 4.217 21 C -0.077 4.077 22 N -0.126 5.126 23 H 0.288 0.712 24 N -0.130 5.130 25 C -0.049 4.049 26 C -0.105 4.105 27 N -0.095 5.095 28 O 0.016 5.984 29 H 0.069 0.931 30 H 0.035 0.965 31 H 0.035 0.965 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.119 0.881 37 H 0.127 0.873 38 H 0.122 0.878 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.205 0.795 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 5.768 -32.933 -4.399 33.722 hybrid contribution 0.598 0.506 0.521 0.941 sum 6.366 -32.427 -3.878 33.272 Atomic orbital electron populations 1.69973 1.06059 1.26458 1.51001 1.25036 0.94845 0.99287 0.95406 0.86551 0.80119 0.83866 0.77546 1.19732 1.21056 1.21057 1.21303 0.93091 0.91088 1.50337 0.92580 1.19111 0.94048 0.91308 0.97333 1.21633 0.99171 0.93096 1.00731 1.21731 0.97504 0.93310 1.02807 1.20532 0.97175 0.83558 1.05744 1.29122 0.95472 0.97314 0.80213 1.71910 1.15648 1.05127 1.28930 1.25497 0.99790 0.96242 0.88384 1.18921 0.95477 0.88762 0.99651 1.19044 0.96605 0.94976 0.94242 1.20461 1.00795 0.94714 0.99932 1.20183 0.93660 0.98179 0.94576 1.19682 1.03269 0.98261 1.00475 1.22703 0.96542 0.99385 0.89080 1.46351 1.29900 1.18208 1.18188 0.71199 1.77731 1.12244 1.00390 1.22653 1.20894 0.95696 0.95791 0.92485 1.19805 0.94701 0.97468 0.98480 1.74587 1.15668 1.03709 1.15545 1.85286 1.52170 1.24965 1.35980 0.93083 0.96550 0.96541 0.92925 0.92927 0.91446 0.91662 0.88147 0.87329 0.87848 0.87407 0.85699 0.85655 0.79485 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 3 Si 0.89 21.63 29.54 -169.99 -5.02 16.61 16 4 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 7 C -0.52 -14.61 9.11 -34.44 -0.31 -14.92 16 8 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 9 C 0.02 0.48 4.97 -27.89 -0.14 0.34 16 10 C -0.11 -2.08 5.15 -26.73 -0.14 -2.22 16 11 C -0.11 -1.81 5.20 -26.73 -0.14 -1.95 16 12 C -0.03 -0.39 5.84 -27.88 -0.16 -0.55 16 13 C 0.20 2.79 7.77 -13.06 -0.10 2.68 16 14 N -0.48 -7.13 11.55 -9.87 -0.11 -7.24 16 15 C 0.17 2.34 7.45 -156.37 -1.17 1.18 16 16 C 0.01 0.11 5.92 -29.04 -0.17 -0.07 16 17 C -0.04 -0.44 5.07 -105.01 -0.53 -0.97 16 18 C -0.14 -1.28 9.51 -39.96 -0.38 -1.66 16 19 C -0.05 -0.38 10.09 -39.41 -0.40 -0.77 16 20 C -0.21 -1.90 6.33 -105.19 -0.67 -2.57 16 21 C 0.08 0.47 12.07 -16.61 -0.20 0.27 16 22 N -0.43 -2.84 7.18 30.84 0.22 -2.62 16 23 H 0.44 1.21 8.96 -182.71 -1.64 -0.43 16 24 N -0.30 -3.41 12.70 33.25 0.42 -2.99 16 25 C 0.11 1.22 7.49 -83.06 -0.62 0.60 16 26 C -0.08 -0.94 9.65 -39.41 -0.38 -1.32 16 27 N -0.39 -5.57 12.16 30.90 0.38 -5.19 16 28 O 0.07 1.06 11.31 18.11 0.20 1.27 16 29 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 30 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.10 1.06 8.14 -51.93 -0.42 0.63 16 37 H 0.11 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.10 0.83 8.07 -51.93 -0.42 0.41 16 39 H 0.11 0.94 8.06 -51.93 -0.42 0.53 16 40 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 41 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 42 H 0.19 0.22 8.06 -52.49 -0.42 -0.21 16 43 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 LS Contribution 374.65 15.07 5.65 5.65 Total: -1.00 -35.72 374.65 -10.23 -45.95 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -7.09 Total: -4.71 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: -5.61 Total: -20.45 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 1.64 Total: -44.31 kcal Atomic # 8 Polarization: 1.06 SS G_CDS: 0.20 Total: 1.27 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -35.72 -10.23 -45.95 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350268270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 181.062 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.950 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds