Wall clock time and date at job start Tue Mar 31 2020 14:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86800 * 119.99941 * 2 1 4 4 H 1.48500 * 109.47217 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.47019 * 299.99704 * 3 2 1 6 6 H 1.48503 * 109.46986 * 59.99393 * 3 2 1 7 7 C 1.37872 * 120.00191 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00299 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00283 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.47707 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47283 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46942 * 180.02562 * 11 10 9 13 13 C 1.50698 * 109.46986 * 179.97438 * 12 11 10 14 14 N 1.31134 * 126.54821 * 90.00034 * 13 12 11 15 15 C 1.34492 * 105.61385 * 180.02562 * 14 13 12 16 16 C 1.50703 * 126.28597 * 180.02562 * 15 14 13 17 17 C 1.50696 * 109.47405 * 89.99715 * 16 15 14 18 18 C 1.39688 * 119.09121 * 89.99869 * 17 16 15 19 19 C 1.35659 * 121.72750 * 179.97438 * 18 17 16 20 20 C 1.41134 * 119.53409 * 0.02562 * 19 18 17 21 21 C 1.38237 * 134.81934 * 179.97438 * 20 19 18 22 22 N 1.33989 * 107.90968 * 179.97438 * 21 20 19 23 23 H 0.96994 * 125.02597 * 180.02562 * 22 21 20 24 24 N 1.39959 * 109.95144 * 0.02562 * 22 21 20 25 25 C 1.32057 * 108.96113 * 0.02562 * 24 22 21 26 26 C 1.35635 * 119.09312 * 269.72879 * 17 16 15 27 27 N 1.29951 * 107.42553 * 359.97438 * 15 14 13 28 28 O 1.21300 * 110.25010 * 359.97438 * 27 15 14 29 29 H 0.96995 * 120.00193 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46995 * 59.99954 * 9 7 2 31 31 H 1.09004 * 109.47468 * 300.00661 * 9 7 2 32 32 H 1.09007 * 109.46809 * 60.00586 * 10 9 7 33 33 H 1.08992 * 109.47285 * 300.00617 * 10 9 7 34 34 H 1.08992 * 109.47223 * 60.00564 * 11 10 9 35 35 H 1.09004 * 109.47234 * 300.00041 * 11 10 9 36 36 H 1.09005 * 109.47125 * 59.99868 * 12 11 10 37 37 H 1.08999 * 109.46907 * 300.00411 * 12 11 10 38 38 H 1.09006 * 109.46887 * 209.99813 * 16 15 14 39 39 H 1.09002 * 109.46861 * 329.99190 * 16 15 14 40 40 H 1.07997 * 119.13632 * 0.02562 * 18 17 16 41 41 H 1.07998 * 120.23271 * 180.02562 * 19 18 17 42 42 H 1.08002 * 126.04996 * 359.97438 * 21 20 19 43 43 H 1.07993 * 120.20090 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2126 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6620 0.0005 11 6 1.4803 -4.9871 -0.0001 12 6 2.4746 -6.1500 0.0005 13 6 1.7212 -7.4551 0.0005 14 7 1.3311 -8.1316 -1.0529 15 6 0.7024 -9.2191 -0.5724 16 6 0.0695 -10.3167 -1.3883 17 6 1.0888 -11.3932 -1.6588 18 6 1.2167 -12.4501 -0.7544 19 6 2.1160 -13.4476 -0.9454 20 6 2.9487 -13.4249 -2.0846 21 6 3.9432 -14.2466 -2.5812 22 7 4.3883 -13.7098 -3.7254 23 1 5.0882 -14.0859 -4.2815 24 7 3.6938 -12.5259 -3.9993 25 6 2.8150 -12.3115 -3.0371 26 6 1.8529 -11.3121 -2.7765 27 7 0.7419 -9.1500 0.7247 28 8 1.3235 -8.1445 1.0741 29 1 -0.4850 0.8400 -0.0004 30 1 0.6248 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8902 32 1 2.8719 -3.6043 0.8906 33 1 2.8720 -3.6043 -0.8893 34 1 0.8541 -5.0446 -0.8903 35 1 0.8533 -5.0451 0.8897 36 1 3.1007 -6.0923 0.8910 37 1 3.1020 -6.0921 -0.8890 38 1 -0.7698 -10.7412 -0.8373 39 1 -0.2865 -9.9075 -2.3338 40 1 0.5824 -12.4741 0.1194 41 1 2.1942 -14.2535 -0.2306 42 1 4.2987 -15.1598 -2.1273 43 1 1.7293 -10.4854 -3.4602 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000350268270.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:59:12 Heat of formation + Delta-G solvation = 111.995662 kcal Electronic energy + Delta-G solvation = -25181.081947 eV Core-core repulsion = 21422.282380 eV Total energy + Delta-G solvation = -3758.799567 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.58291 -42.22465 -38.94130 -37.40313 -36.73652 -35.20885 -33.92539 -33.18810 -32.64201 -30.92505 -29.82834 -28.99565 -27.47288 -25.08125 -24.77273 -23.88466 -22.63594 -21.82876 -21.72882 -21.66000 -19.15600 -18.95436 -18.46525 -18.32978 -17.66189 -16.58676 -16.54014 -16.35938 -16.12360 -15.88730 -15.54750 -15.22157 -14.91159 -14.63513 -14.26450 -14.11639 -13.72228 -13.68393 -13.42295 -13.14553 -13.04735 -12.83777 -12.72223 -12.65711 -12.43049 -12.23807 -12.19041 -12.13976 -11.99836 -11.36749 -11.35151 -11.34947 -11.28963 -11.14986 -10.74798 -10.52466 -9.71832 -8.64670 -8.16856 -6.27518 -0.38424 0.12858 0.72890 1.21632 1.42437 1.42635 1.45108 1.56000 1.84103 1.84869 2.43714 2.57437 2.87764 3.10984 3.16683 3.25919 3.65001 3.84973 3.94231 4.06079 4.08446 4.16366 4.27269 4.36121 4.39803 4.51476 4.60967 4.65555 4.66245 4.76040 4.80359 4.83284 4.91725 4.97817 5.16203 5.19666 5.33799 5.34766 5.39987 5.50686 5.59556 5.64739 5.82609 5.89722 5.92075 6.26122 6.29119 6.56259 6.91395 7.14864 7.41925 8.95245 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.023126 B = 0.001788 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.455715 B =15659.358002 C =16313.484828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.005 4.005 3 Si 0.965 3.035 4 H -0.259 1.259 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.539 4.539 8 H 0.065 0.935 9 C 0.018 3.982 10 C -0.096 4.096 11 C -0.104 4.104 12 C -0.021 4.021 13 C 0.198 3.802 14 N -0.504 5.504 15 C 0.175 3.825 16 C 0.010 3.990 17 C -0.036 4.036 18 C -0.168 4.168 19 C -0.028 4.028 20 C -0.241 4.241 21 C 0.119 3.881 22 N -0.415 5.415 23 H 0.460 0.540 24 N -0.355 5.355 25 C 0.080 3.920 26 C -0.116 4.116 27 N -0.398 5.398 28 O 0.066 5.934 29 H 0.262 0.738 30 H -0.013 1.013 31 H -0.009 1.009 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.128 0.872 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.244 0.756 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.985 -34.922 -2.533 35.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.789 3.211 4 H -0.183 1.183 5 H -0.207 1.207 6 H -0.205 1.205 7 C -0.577 4.577 8 H 0.083 0.917 9 C -0.019 4.019 10 C -0.133 4.133 11 C -0.143 4.143 12 C -0.059 4.059 13 C -0.022 4.022 14 N -0.238 5.238 15 C -0.098 4.098 16 C -0.029 4.029 17 C -0.042 4.042 18 C -0.187 4.187 19 C -0.048 4.048 20 C -0.250 4.250 21 C -0.040 4.040 22 N -0.116 5.116 23 H 0.308 0.692 24 N -0.185 5.185 25 C -0.072 4.072 26 C -0.137 4.137 27 N -0.109 5.109 28 O 0.011 5.989 29 H 0.071 0.929 30 H 0.006 0.994 31 H 0.009 0.991 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.146 0.854 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.132 0.868 40 H 0.154 0.846 41 H 0.177 0.823 42 H 0.260 0.740 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 7.961 -35.037 -3.606 36.110 hybrid contribution -0.046 1.020 0.251 1.051 sum 7.915 -34.017 -3.355 35.086 Atomic orbital electron populations 1.70114 1.07885 1.27572 1.52120 1.26020 0.95759 1.03508 0.94980 0.85400 0.79249 0.78814 0.77589 1.18255 1.20677 1.20540 1.21800 0.93776 0.92339 1.49815 0.91695 1.19067 0.94703 0.93472 0.94688 1.21421 0.97940 0.92197 1.01785 1.21497 0.97697 0.93078 1.02023 1.20475 0.96243 0.81378 1.07815 1.29323 0.95201 0.97574 0.80069 1.71936 1.16328 1.05950 1.29605 1.26027 0.99003 0.96361 0.88379 1.19113 0.95912 0.88085 0.99772 1.19098 0.95939 0.95132 0.94010 1.20634 1.02345 0.95231 1.00499 1.20579 0.91857 0.98110 0.94273 1.20120 1.05240 0.98664 1.01015 1.23569 0.93719 0.99402 0.87349 1.46422 1.29551 1.17014 1.18658 0.69240 1.77644 1.13903 1.02992 1.23940 1.21114 0.95863 0.96756 0.93498 1.19795 0.96438 0.98089 0.99364 1.74573 1.16318 1.03989 1.15973 1.85263 1.52385 1.25146 1.36122 0.92937 0.99449 0.99062 0.91476 0.92115 0.92852 0.92024 0.85354 0.86068 0.85875 0.86828 0.84596 0.82275 0.73993 0.86234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.70 13.29 21.44 0.28 -57.42 16 2 C -0.01 -0.32 5.46 84.65 0.46 0.14 16 3 Si 0.96 44.39 29.54 68.60 2.03 46.41 16 4 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 7 C -0.54 -30.49 9.11 25.60 0.23 -30.25 16 8 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 9 C 0.02 0.93 4.97 29.85 0.15 1.08 16 10 C -0.10 -3.62 5.15 30.59 0.16 -3.46 16 11 C -0.10 -3.25 5.20 30.60 0.16 -3.09 16 12 C -0.02 -0.49 5.84 29.85 0.17 -0.31 16 13 C 0.20 5.46 7.77 88.38 0.69 6.15 16 14 N -0.50 -15.02 11.55 -303.18 -3.50 -18.53 16 15 C 0.18 4.74 7.45 138.46 1.03 5.78 16 16 C 0.01 0.19 5.92 29.10 0.17 0.37 16 17 C -0.04 -0.76 5.07 -20.12 -0.10 -0.86 16 18 C -0.17 -2.92 9.51 22.02 0.21 -2.71 16 19 C -0.03 -0.40 10.09 22.38 0.23 -0.18 16 20 C -0.24 -3.98 6.33 -20.23 -0.13 -4.10 16 21 C 0.12 0.96 12.07 84.36 1.02 1.98 16 22 N -0.42 -4.73 7.18 -56.35 -0.40 -5.13 16 23 H 0.46 1.48 8.96 -213.42 -1.91 -0.43 16 24 N -0.36 -8.13 12.70 -48.71 -0.62 -8.75 16 25 C 0.08 1.90 7.49 42.16 0.32 2.21 16 26 C -0.12 -2.79 9.65 22.38 0.22 -2.57 16 27 N -0.40 -11.37 12.16 -60.31 -0.73 -12.11 16 28 O 0.07 1.89 11.31 74.85 0.85 2.74 16 29 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 30 H -0.01 -0.74 8.14 -2.38 -0.02 -0.76 16 31 H -0.01 -0.51 8.14 -2.38 -0.02 -0.53 16 32 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 36 H 0.13 2.35 8.14 -2.38 -0.02 2.34 16 37 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 38 H 0.12 1.93 8.07 -2.38 -0.02 1.91 16 39 H 0.11 2.10 8.06 -2.39 -0.02 2.08 16 40 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.16 1.07 8.06 -2.91 -0.02 1.05 16 42 H 0.24 -0.93 8.06 -2.91 -0.02 -0.96 16 43 H 0.12 2.99 8.06 -2.91 -0.02 2.97 16 Total: -1.00 -80.73 374.65 2.01 -78.72 By element: Atomic # 1 Polarization: 4.76 SS G_CDS: -0.87 Total: 3.89 kcal Atomic # 6 Polarization: -34.81 SS G_CDS: 4.98 Total: -29.83 kcal Atomic # 7 Polarization: -96.96 SS G_CDS: -4.97 Total: -101.93 kcal Atomic # 8 Polarization: 1.89 SS G_CDS: 0.85 Total: 2.74 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -80.73 2.01 -78.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000350268270.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.720 kcal (2) G-P(sol) polarization free energy of solvation -80.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds