Wall clock time and date at job start Tue Mar 31 2020 14:17:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99763 * 2 1 4 4 C 1.50699 * 109.46986 * 269.99401 * 3 2 1 5 5 H 1.07999 * 119.99736 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00159 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99614 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00146 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46985 * 90.00298 * 8 6 4 10 10 H 1.48493 * 109.47062 * 210.00375 * 8 6 4 11 11 H 1.48503 * 109.47158 * 330.00310 * 8 6 4 12 12 C 1.34780 * 120.00155 * 179.97438 * 2 1 3 13 13 O 1.21585 * 120.00196 * 184.32223 * 12 2 1 14 14 C 1.47599 * 119.99649 * 4.32246 * 12 2 1 15 15 C 1.39743 * 120.08466 * 147.89553 * 14 12 2 16 16 C 1.37696 * 119.90831 * 180.02562 * 15 14 12 17 17 C 1.39000 * 120.09019 * 0.02562 * 16 15 14 18 18 O 1.35708 * 119.91188 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00298 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47463 * 179.97438 * 19 18 17 21 21 C 1.38647 * 120.78680 * 90.00218 * 20 19 18 22 22 C 1.38209 * 119.16075 * 179.97438 * 21 20 19 23 23 N 1.31865 * 120.76422 * 0.02562 * 22 21 20 24 24 C 1.31875 * 121.72787 * 359.95331 * 23 22 21 25 25 C 1.38212 * 120.76259 * 0.05007 * 24 23 22 26 26 C 1.38989 * 120.17722 * 0.25108 * 17 16 15 27 27 C 1.37702 * 120.08736 * 359.44901 * 26 17 16 28 28 H 1.09002 * 109.47307 * 274.67374 * 1 2 3 29 29 H 1.09000 * 109.47197 * 34.67744 * 1 2 3 30 30 H 1.09004 * 109.46976 * 154.68202 * 1 2 3 31 31 H 1.08996 * 109.46948 * 29.99743 * 3 2 1 32 32 H 1.09005 * 109.46819 * 150.00025 * 3 2 1 33 33 H 0.96998 * 120.00005 * 180.02562 * 7 6 4 34 34 H 1.07996 * 120.04371 * 359.97438 * 15 14 12 35 35 H 1.07998 * 119.95827 * 179.97438 * 16 15 14 36 36 H 1.09006 * 109.46635 * 59.99722 * 19 18 17 37 37 H 1.08996 * 109.46900 * 300.00111 * 19 18 17 38 38 H 1.08004 * 120.42211 * 359.69838 * 21 20 19 39 39 H 1.08000 * 119.61620 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.62066 * 180.02562 * 24 23 22 41 41 H 1.07992 * 120.41570 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.95932 * 179.72718 * 26 17 16 43 43 H 1.08000 * 120.04795 * 180.27206 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2416 6 6 3.1260 2.8779 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4368 3.4174 -3.4340 9 1 2.3065 4.2600 -3.9004 10 1 4.6968 4.2007 -3.4967 11 1 3.5542 2.2204 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3522 -1.1687 0.0799 14 6 1.4040 -2.4437 -0.0953 15 6 1.9830 -3.5384 -0.7427 16 6 1.2939 -4.7273 -0.8304 17 6 0.0240 -4.8393 -0.2765 18 8 -0.6521 -6.0126 -0.3655 19 6 -1.9522 -6.0588 0.2259 20 6 -2.5452 -7.4301 0.0290 21 6 -2.3435 -8.4317 0.9663 22 6 -2.9035 -9.6770 0.7522 23 7 -3.6213 -9.9172 -0.3276 24 6 -3.8342 -8.9887 -1.2396 25 6 -3.3058 -7.7200 -1.0934 26 6 -0.5576 -3.7511 0.3633 27 6 0.1274 -2.5605 0.4606 28 1 -0.3634 0.0837 1.0243 29 1 -0.3633 0.8451 -0.5847 30 1 -0.3633 -0.9290 -0.4395 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0293 4.4444 -0.8504 34 1 2.9691 -3.4518 -1.1744 35 1 1.7404 -5.5738 -1.3309 36 1 -2.5931 -5.3148 -0.2473 37 1 -1.8741 -5.8459 1.2920 38 1 -1.7525 -8.2426 1.8502 39 1 -2.7507 -10.4627 1.4772 40 1 -4.4278 -9.2225 -2.1109 41 1 -3.4834 -6.9640 -1.8439 42 1 -1.5464 -3.8407 0.7886 43 1 -0.3234 -1.7166 0.9617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354472171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:42 Heat of formation + Delta-G solvation = 12.581461 kcal Electronic energy + Delta-G solvation = -25734.655424 eV Core-core repulsion = 21939.252182 eV Total energy + Delta-G solvation = -3795.403241 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.87877 -40.26638 -39.10693 -37.01804 -34.98974 -33.85834 -32.71531 -31.70123 -31.20274 -30.25555 -28.05099 -27.31126 -26.10323 -23.96577 -23.75216 -23.16476 -22.35069 -21.61018 -19.20722 -18.36743 -17.43448 -17.11469 -16.76080 -16.53935 -16.19339 -15.88348 -15.63376 -15.11119 -14.68049 -14.54350 -14.35281 -14.27027 -14.13533 -13.83573 -13.50535 -13.32499 -12.86502 -12.59691 -12.38091 -12.23348 -12.19598 -12.01325 -11.67885 -11.26840 -11.13570 -10.94350 -10.73722 -10.54937 -10.25124 -10.17697 -9.97460 -9.65848 -9.63345 -9.07474 -9.02390 -8.45545 -8.25653 -7.67818 -6.06095 -4.11105 0.58828 0.65404 1.08252 1.28779 2.83358 3.27182 3.29191 3.35944 3.40616 3.44995 3.81600 3.98804 4.06605 4.11425 4.16874 4.43328 4.49909 4.62023 4.64314 4.75402 4.79581 4.82633 5.02800 5.12047 5.23839 5.28255 5.29693 5.33800 5.43228 5.57391 5.60916 5.76971 5.80103 5.93291 6.08157 6.16551 6.18544 6.19438 6.45797 6.59613 7.03779 7.14813 7.42248 7.48032 7.49984 7.90244 8.20770 8.35938 8.87002 9.04277 9.53983 11.01956 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028764 B = 0.002018 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.212255 B =13873.154098 C =14038.907038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.594 5.594 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.548 3.452 13 O -0.539 6.539 14 C -0.152 4.152 15 C -0.026 4.026 16 C -0.158 4.158 17 C 0.138 3.862 18 O -0.308 6.308 19 C 0.098 3.902 20 C -0.049 4.049 21 C -0.149 4.149 22 C 0.097 3.903 23 N -0.480 5.480 24 C 0.097 3.903 25 C -0.149 4.149 26 C -0.220 4.220 27 C -0.062 4.062 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.140 0.860 35 H 0.134 0.866 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.139 0.861 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.139 0.861 42 H 0.130 0.870 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.809 -22.487 3.119 28.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.325 5.325 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.335 3.665 13 O -0.417 6.417 14 C -0.156 4.156 15 C -0.045 4.045 16 C -0.176 4.176 17 C 0.093 3.907 18 O -0.221 6.221 19 C 0.023 3.977 20 C -0.057 4.057 21 C -0.169 4.169 22 C -0.060 4.060 23 N -0.190 5.190 24 C -0.060 4.060 25 C -0.169 4.169 26 C -0.238 4.238 27 C -0.081 4.081 28 H 0.067 0.933 29 H 0.091 0.909 30 H 0.093 0.907 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.158 0.842 35 H 0.152 0.848 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.156 0.844 39 H 0.176 0.824 40 H 0.176 0.824 41 H 0.157 0.843 42 H 0.148 0.852 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -16.369 -23.270 3.003 28.608 hybrid contribution 0.301 1.465 -0.752 1.674 sum -16.068 -21.805 2.251 27.179 Atomic orbital electron populations 1.22253 0.81912 1.03181 1.00379 1.48054 1.06094 1.07713 1.70677 1.19340 0.92700 0.77799 0.97651 1.21429 1.36653 1.06359 0.92227 0.92409 1.24944 0.95312 0.96377 0.97509 1.69932 1.38330 1.14279 1.30740 0.86481 0.77690 0.78601 0.84569 1.20629 1.21049 1.19868 1.18079 0.87179 0.83294 0.77951 1.90754 1.13502 1.87106 1.50376 1.20189 0.95727 0.95758 1.03877 1.21081 0.99154 0.90156 0.94121 1.20338 0.93088 0.99106 1.05104 1.19155 0.91894 0.84403 0.95256 1.86071 1.29227 1.32268 1.74578 1.21581 0.83122 0.93965 0.99009 1.19923 0.96223 0.94847 0.94744 1.22142 1.00311 0.93925 1.00515 1.22820 0.92848 0.95695 0.94649 1.67690 1.13869 1.35120 1.02301 1.22826 0.96835 0.88896 0.97440 1.22146 0.98233 0.98873 0.97611 1.21128 1.01933 0.93742 1.07043 1.21754 0.92914 0.97190 0.96199 0.93303 0.90944 0.90736 0.94840 0.93521 0.92679 0.84194 0.84834 0.90368 0.90396 0.84362 0.82365 0.82351 0.84336 0.85234 0.83542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.04 8.80 59.85 0.53 1.57 16 2 N -0.59 -12.79 2.86 -184.16 -0.53 -13.32 16 3 C 0.24 6.42 5.22 -5.19 -0.03 6.39 16 4 C -0.53 -15.01 9.39 -34.44 -0.32 -15.34 16 5 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 C 0.55 11.86 7.43 -12.44 -0.09 11.76 16 13 O -0.54 -13.94 16.31 5.29 0.09 -13.86 16 14 C -0.15 -2.53 5.47 -104.96 -0.57 -3.10 16 15 C -0.03 -0.40 9.59 -39.22 -0.38 -0.77 16 16 C -0.16 -1.99 9.97 -39.50 -0.39 -2.39 16 17 C 0.14 1.60 6.70 -39.02 -0.26 1.34 16 18 O -0.31 -3.20 10.11 -18.83 -0.19 -3.39 16 19 C 0.10 0.71 4.91 36.01 0.18 0.88 16 20 C -0.05 -0.36 5.55 -104.32 -0.58 -0.94 16 21 C -0.15 -1.01 9.82 -39.44 -0.39 -1.40 16 22 C 0.10 0.69 11.18 -17.55 -0.20 0.49 16 23 N -0.48 -4.19 10.36 -13.25 -0.14 -4.33 16 24 C 0.10 0.69 11.18 -17.54 -0.20 0.50 16 25 C -0.15 -1.01 9.82 -39.44 -0.39 -1.40 16 26 C -0.22 -2.37 9.01 -39.50 -0.36 -2.72 16 27 C -0.06 -0.81 7.42 -39.22 -0.29 -1.10 16 28 H 0.05 0.64 7.44 -51.93 -0.39 0.25 16 29 H 0.07 1.17 8.11 -51.93 -0.42 0.75 16 30 H 0.07 1.00 4.71 -51.93 -0.24 0.76 16 31 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 32 H 0.05 1.38 7.37 -51.93 -0.38 1.00 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 34 H 0.14 2.14 7.95 -52.49 -0.42 1.73 16 35 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.08 0.46 7.60 -51.93 -0.39 0.06 16 37 H 0.08 0.46 7.63 -51.93 -0.40 0.06 16 38 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 39 H 0.16 0.72 8.06 -52.49 -0.42 0.29 16 40 H 0.16 0.73 8.06 -52.49 -0.42 0.30 16 41 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 42 H 0.13 0.99 6.28 -52.48 -0.33 0.66 16 43 H 0.15 1.68 4.81 -52.49 -0.25 1.43 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -35.57 367.05 -8.66 -44.23 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -5.30 Total: -1.32 kcal Atomic # 6 Polarization: -0.74 SS G_CDS: -3.83 Total: -4.57 kcal Atomic # 7 Polarization: -43.52 SS G_CDS: 0.07 Total: -43.45 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.10 Total: -17.25 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.57 -8.66 -44.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354472171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.806 kcal (2) G-P(sol) polarization free energy of solvation -35.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds