Wall clock time and date at job start Tue Mar 31 2020 14:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46503 * 119.99763 * 2 1 4 4 C 1.50699 * 109.46986 * 269.99401 * 3 2 1 5 5 H 1.07999 * 119.99736 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00159 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99614 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00146 * 180.02562 * 6 4 3 9 9 H 1.48500 * 109.46985 * 90.00298 * 8 6 4 10 10 H 1.48493 * 109.47062 * 210.00375 * 8 6 4 11 11 H 1.48503 * 109.47158 * 330.00310 * 8 6 4 12 12 C 1.34780 * 120.00155 * 179.97438 * 2 1 3 13 13 O 1.21585 * 120.00196 * 184.32223 * 12 2 1 14 14 C 1.47599 * 119.99649 * 4.32246 * 12 2 1 15 15 C 1.39743 * 120.08466 * 147.89553 * 14 12 2 16 16 C 1.37696 * 119.90831 * 180.02562 * 15 14 12 17 17 C 1.39000 * 120.09019 * 0.02562 * 16 15 14 18 18 O 1.35708 * 119.91188 * 179.97438 * 17 16 15 19 19 C 1.42901 * 117.00298 * 179.97438 * 18 17 16 20 20 C 1.50700 * 109.47463 * 179.97438 * 19 18 17 21 21 C 1.38647 * 120.78680 * 90.00218 * 20 19 18 22 22 C 1.38209 * 119.16075 * 179.97438 * 21 20 19 23 23 N 1.31865 * 120.76422 * 0.02562 * 22 21 20 24 24 C 1.31875 * 121.72787 * 359.95331 * 23 22 21 25 25 C 1.38212 * 120.76259 * 0.05007 * 24 23 22 26 26 C 1.38989 * 120.17722 * 0.25108 * 17 16 15 27 27 C 1.37702 * 120.08736 * 359.44901 * 26 17 16 28 28 H 1.09002 * 109.47307 * 274.67374 * 1 2 3 29 29 H 1.09000 * 109.47197 * 34.67744 * 1 2 3 30 30 H 1.09004 * 109.46976 * 154.68202 * 1 2 3 31 31 H 1.08996 * 109.46948 * 29.99743 * 3 2 1 32 32 H 1.09005 * 109.46819 * 150.00025 * 3 2 1 33 33 H 0.96998 * 120.00005 * 180.02562 * 7 6 4 34 34 H 1.07996 * 120.04371 * 359.97438 * 15 14 12 35 35 H 1.07998 * 119.95827 * 179.97438 * 16 15 14 36 36 H 1.09006 * 109.46635 * 59.99722 * 19 18 17 37 37 H 1.08996 * 109.46900 * 300.00111 * 19 18 17 38 38 H 1.08004 * 120.42211 * 359.69838 * 21 20 19 39 39 H 1.08000 * 119.61620 * 179.97438 * 22 21 20 40 40 H 1.07999 * 119.62066 * 180.02562 * 24 23 22 41 41 H 1.07992 * 120.41570 * 179.97438 * 25 24 23 42 42 H 1.08003 * 119.95932 * 179.72718 * 26 17 16 43 43 H 1.08000 * 120.04795 * 180.27206 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0960 -2.2416 6 6 3.1260 2.8779 -1.6728 7 7 3.5532 3.6181 -0.6732 8 14 3.4368 3.4174 -3.4340 9 1 2.3065 4.2600 -3.9004 10 1 4.6968 4.2007 -3.4967 11 1 3.5542 2.2204 -4.3050 12 6 2.1389 -1.1672 0.0005 13 8 3.3522 -1.1687 0.0799 14 6 1.4040 -2.4437 -0.0953 15 6 1.9830 -3.5384 -0.7427 16 6 1.2939 -4.7273 -0.8304 17 6 0.0240 -4.8393 -0.2765 18 8 -0.6521 -6.0126 -0.3655 19 6 -1.9522 -6.0588 0.2259 20 6 -2.5452 -7.4301 0.0290 21 6 -2.3435 -8.4317 0.9663 22 6 -2.9035 -9.6770 0.7522 23 7 -3.6213 -9.9172 -0.3276 24 6 -3.8342 -8.9887 -1.2396 25 6 -3.3058 -7.7200 -1.0934 26 6 -0.5576 -3.7511 0.3633 27 6 0.1274 -2.5605 0.4606 28 1 -0.3634 0.0837 1.0243 29 1 -0.3633 0.8451 -0.5847 30 1 -0.3633 -0.9290 -0.4395 31 1 1.6083 2.0284 0.5138 32 1 3.1499 1.1384 0.5139 33 1 4.0293 4.4444 -0.8504 34 1 2.9691 -3.4518 -1.1744 35 1 1.7404 -5.5738 -1.3309 36 1 -2.5931 -5.3148 -0.2473 37 1 -1.8741 -5.8459 1.2920 38 1 -1.7525 -8.2426 1.8502 39 1 -2.7507 -10.4627 1.4772 40 1 -4.4278 -9.2225 -2.1109 41 1 -3.4834 -6.9640 -1.8439 42 1 -1.5464 -3.8407 0.7886 43 1 -0.3234 -1.7166 0.9617 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354472171.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:41 Heat of formation + Delta-G solvation = -10.127161 kcal Electronic energy + Delta-G solvation = -25735.640144 eV Core-core repulsion = 21939.252182 eV Total energy + Delta-G solvation = -3796.387961 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.67931 -41.11605 -40.32631 -38.13532 -36.74443 -34.84757 -34.37406 -32.30750 -32.16175 -31.43330 -29.56804 -28.20364 -27.63720 -25.43611 -24.43895 -24.03880 -23.55563 -22.51737 -20.65491 -19.24844 -18.71089 -18.21979 -18.03280 -17.65184 -17.28214 -16.70798 -16.47295 -16.35370 -16.13937 -15.92682 -15.66901 -15.10395 -14.76302 -14.67112 -14.56992 -14.39396 -14.29824 -13.86028 -13.66825 -13.52487 -13.39236 -13.11261 -12.97890 -12.79306 -12.64391 -12.47645 -12.24247 -11.94156 -11.73402 -11.71283 -10.80177 -10.73344 -10.65623 -10.48022 -10.10126 -10.05124 -9.51605 -9.22893 -8.24128 -6.39342 -0.02466 0.07010 0.18689 0.30624 1.35594 1.38871 1.49231 1.87084 2.13601 2.28522 2.42597 2.80285 2.92894 3.05147 3.48783 3.60170 3.68023 3.73442 3.75966 3.90860 4.06826 4.17964 4.19017 4.28789 4.36116 4.38929 4.46276 4.56851 4.62132 4.69192 4.88064 4.88551 4.94029 4.95599 4.98834 5.09392 5.17626 5.24111 5.29388 5.42577 5.52373 5.59530 5.73725 5.80984 6.03441 6.31198 6.66392 6.72320 6.99727 7.24305 7.40684 8.82951 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.028764 B = 0.002018 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 973.212255 B =13873.154098 C =14038.907038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.061 3.939 2 N -0.602 5.602 3 C 0.257 3.743 4 C -0.545 4.545 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.926 5.926 8 Si 0.969 3.031 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.274 1.274 12 C 0.539 3.461 13 O -0.601 6.601 14 C -0.181 4.181 15 C -0.039 4.039 16 C -0.160 4.160 17 C 0.153 3.847 18 O -0.315 6.315 19 C 0.091 3.909 20 C -0.062 4.062 21 C -0.152 4.152 22 C 0.084 3.916 23 N -0.510 5.510 24 C 0.084 3.916 25 C -0.152 4.152 26 C -0.204 4.204 27 C -0.054 4.054 28 H 0.083 0.917 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.029 0.971 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.122 0.878 35 H 0.148 0.852 36 H 0.099 0.901 37 H 0.098 0.902 38 H 0.156 0.844 39 H 0.177 0.823 40 H 0.177 0.823 41 H 0.156 0.844 42 H 0.173 0.827 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.810 -23.739 2.676 31.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.332 5.332 3 C 0.136 3.864 4 C -0.584 4.584 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.566 5.566 8 Si 0.794 3.206 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.330 3.670 13 O -0.484 6.484 14 C -0.185 4.185 15 C -0.058 4.058 16 C -0.178 4.178 17 C 0.107 3.893 18 O -0.228 6.228 19 C 0.017 3.983 20 C -0.070 4.070 21 C -0.172 4.172 22 C -0.072 4.072 23 N -0.220 5.220 24 C -0.072 4.072 25 C -0.171 4.171 26 C -0.222 4.222 27 C -0.072 4.072 28 H 0.101 0.899 29 H 0.085 0.915 30 H 0.122 0.878 31 H 0.047 0.953 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.166 0.834 36 H 0.117 0.883 37 H 0.116 0.884 38 H 0.173 0.827 39 H 0.194 0.806 40 H 0.194 0.806 41 H 0.174 0.826 42 H 0.190 0.810 43 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -19.439 -24.541 2.566 31.412 hybrid contribution 1.132 1.682 -0.560 2.103 sum -18.307 -22.859 2.006 29.355 Atomic orbital electron populations 1.22608 0.78159 1.04528 1.02773 1.48054 1.08462 1.06158 1.70495 1.18821 0.91278 0.80033 0.96245 1.21679 1.37145 1.06668 0.92902 0.92995 1.25879 0.94798 0.96371 1.02142 1.70049 1.38787 1.14729 1.33033 0.85388 0.78183 0.78183 0.78894 1.18597 1.20523 1.19907 1.18933 0.86839 0.84878 0.76375 1.90698 1.16373 1.88163 1.53166 1.19819 0.97530 0.93438 1.07668 1.20983 0.98932 0.91026 0.94852 1.20404 0.93809 0.98353 1.05260 1.19196 0.91313 0.85087 0.93683 1.86078 1.30723 1.31425 1.74609 1.21894 0.81717 0.94417 1.00265 1.20088 0.96596 0.95210 0.95122 1.22380 1.00108 0.93638 1.01054 1.23196 0.92664 0.96635 0.94727 1.67699 1.14853 1.36168 1.03235 1.23201 0.97126 0.89061 0.97836 1.22383 0.97797 0.99081 0.97884 1.21475 1.03140 0.92035 1.05545 1.21879 0.91205 0.98842 0.95292 0.89913 0.91502 0.87841 0.95263 0.98217 0.92311 0.86047 0.83423 0.88290 0.88406 0.82662 0.80608 0.80612 0.82623 0.80983 0.81773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.81 8.80 127.77 1.12 2.93 16 2 N -0.60 -26.57 2.86 -854.83 -2.44 -29.01 16 3 C 0.26 14.22 5.22 85.63 0.45 14.66 16 4 C -0.55 -32.03 9.39 25.60 0.24 -31.79 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 6 C 0.01 0.42 5.46 84.66 0.46 0.88 16 7 N -0.93 -56.42 13.29 21.45 0.28 -56.13 16 8 Si 0.97 45.29 29.54 68.60 2.03 47.32 16 9 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 10 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 11 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 12 C 0.54 24.35 7.43 86.71 0.64 25.00 16 13 O -0.60 -33.43 16.31 -3.98 -0.06 -33.50 16 14 C -0.18 -5.99 5.47 -20.08 -0.11 -6.10 16 15 C -0.04 -1.19 9.59 22.51 0.22 -0.97 16 16 C -0.16 -3.76 9.97 22.32 0.22 -3.54 16 17 C 0.15 2.99 6.70 22.63 0.15 3.14 16 18 O -0.31 -5.24 10.11 -90.29 -0.91 -6.15 16 19 C 0.09 0.88 4.91 71.24 0.35 1.23 16 20 C -0.06 -0.71 5.55 -19.67 -0.11 -0.81 16 21 C -0.15 -1.65 9.82 22.36 0.22 -1.43 16 22 C 0.08 1.05 11.18 84.68 0.95 2.00 16 23 N -0.51 -8.19 10.36 -195.83 -2.03 -10.22 16 24 C 0.08 1.05 11.18 84.68 0.95 2.00 16 25 C -0.15 -1.64 9.82 22.36 0.22 -1.42 16 26 C -0.20 -3.42 9.01 22.32 0.20 -3.22 16 27 C -0.05 -1.24 7.42 22.50 0.17 -1.07 16 28 H 0.08 1.92 7.44 -2.39 -0.02 1.90 16 29 H 0.07 2.08 8.11 -2.39 -0.02 2.06 16 30 H 0.10 2.49 4.71 -2.38 -0.01 2.48 16 31 H 0.03 1.61 8.07 -2.39 -0.02 1.59 16 32 H 0.00 -0.02 7.37 -2.38 -0.02 -0.04 16 33 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 34 H 0.12 4.02 7.95 -2.91 -0.02 4.00 16 35 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.10 0.59 7.60 -2.38 -0.02 0.57 16 37 H 0.10 0.60 7.63 -2.39 -0.02 0.58 16 38 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 39 H 0.18 1.30 8.06 -2.91 -0.02 1.27 16 40 H 0.18 1.31 8.06 -2.91 -0.02 1.29 16 41 H 0.16 1.04 8.06 -2.91 -0.02 1.01 16 42 H 0.17 1.45 6.28 -2.91 -0.02 1.43 16 43 H 0.17 3.12 4.81 -2.91 -0.01 3.11 16 Total: -1.00 -82.49 367.05 4.24 -78.25 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 1.03 Total: 7.96 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 6.34 Total: 1.48 kcal Atomic # 7 Polarization: -91.17 SS G_CDS: -4.19 Total: -95.36 kcal Atomic # 8 Polarization: -38.68 SS G_CDS: -0.98 Total: -39.65 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -82.49 4.24 -78.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354472171.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.123 kcal (2) G-P(sol) polarization free energy of solvation -82.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds