Wall clock time and date at job start Tue Mar 31 2020 14:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35735 * 116.99995 * 2 1 4 4 N 1.32161 * 119.73011 * 359.97438 * 3 2 1 5 5 C 1.31992 * 121.72358 * 179.97438 * 4 3 2 6 6 C 1.38080 * 120.96838 * 0.02562 * 5 4 3 7 7 C 1.38728 * 119.35234 * 359.97438 * 6 5 4 8 8 C 1.38967 * 118.42255 * 0.02562 * 7 6 5 9 9 N 1.40126 * 120.50385 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00110 * 24.56679 * 9 8 7 11 11 O 1.21295 * 120.00198 * 5.59420 * 10 9 8 12 12 C 1.50698 * 120.00099 * 185.59733 * 10 9 8 13 13 C 1.52999 * 109.47153 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.47237 * 304.99574 * 13 12 10 15 15 C 1.50700 * 109.47543 * 65.00093 * 13 12 10 16 16 H 1.08001 * 119.99844 * 34.97661 * 15 13 12 17 17 C 1.37879 * 120.00063 * 214.98628 * 15 13 12 18 18 N 1.31515 * 120.00039 * 4.99779 * 17 15 13 19 19 Si 1.86793 * 119.99678 * 185.00316 * 17 15 13 20 20 H 1.48498 * 109.47418 * 59.99609 * 19 17 15 21 21 H 1.48502 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47376 * 299.99561 * 19 17 15 23 23 C 1.50705 * 109.47246 * 185.00152 * 13 12 10 24 24 C 1.38237 * 119.99665 * 294.74839 * 23 13 12 25 25 C 1.38235 * 119.99838 * 179.78628 * 24 23 13 26 26 C 1.38237 * 119.99815 * 0.44289 * 25 24 23 27 27 C 1.38233 * 120.00269 * 359.81093 * 26 25 24 28 28 C 1.38235 * 120.00224 * 115.02061 * 23 13 12 29 29 H 1.08997 * 109.47573 * 299.99838 * 1 2 3 30 30 H 1.09007 * 109.47025 * 59.99920 * 1 2 3 31 31 H 1.08999 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.51412 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.31981 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.79167 * 179.73110 * 7 6 5 35 35 H 0.96994 * 120.00041 * 204.55896 * 9 8 7 36 36 H 1.08999 * 109.47107 * 299.99658 * 12 10 9 37 37 H 1.09005 * 109.47328 * 59.99691 * 12 10 9 38 38 H 0.96997 * 119.99477 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.00366 * 359.97438 * 24 23 13 40 40 H 1.08004 * 120.00271 * 180.27374 * 25 24 23 41 41 H 1.07998 * 120.00043 * 179.83346 * 26 25 24 42 42 H 1.08000 * 120.00619 * 180.02562 * 27 26 25 43 43 H 1.08003 * 119.99985 * 359.97426 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 7 1.3202 2.3144 -0.0005 5 6 1.8782 3.5106 0.0000 6 6 3.2515 3.6540 0.0005 7 6 4.0534 2.5220 0.0011 8 6 3.4385 1.2758 0.0005 9 7 4.2064 0.1037 0.0005 10 6 5.4635 0.1217 0.4863 11 8 5.8950 1.1242 1.0155 12 6 6.3331 -1.1038 0.3718 13 6 7.7006 -0.8188 0.9961 14 1 8.1345 0.0669 0.5319 15 6 7.5381 -0.5821 2.4755 16 1 6.7916 -1.1302 3.0312 17 6 8.3422 0.3342 3.1195 18 7 9.1828 1.0721 2.4278 19 14 8.2379 0.5272 4.9745 20 1 8.5725 -0.7644 5.6263 21 1 9.1987 1.5688 5.4187 22 1 6.8598 0.9305 5.3535 23 6 8.6104 -1.9994 0.7733 24 6 8.3226 -3.2151 1.3651 25 6 9.1547 -4.2992 1.1571 26 6 10.2795 -4.1652 0.3648 27 6 10.5701 -2.9481 -0.2227 28 6 9.7357 -1.8652 -0.0183 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2513 4.3901 -0.0001 33 1 3.6969 4.6379 0.0005 34 1 5.1300 2.6072 -0.0028 35 1 3.8333 -0.7206 -0.3489 36 1 5.8605 -1.9349 0.8953 37 1 6.4607 -1.3619 -0.6795 38 1 9.7487 1.7165 2.8810 39 1 7.4461 -3.3188 1.9874 40 1 8.9275 -5.2502 1.6159 41 1 10.9311 -5.0114 0.2045 42 1 11.4487 -2.8435 -0.8421 43 1 9.9626 -0.9143 -0.4775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000354582375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:01 Heat of formation + Delta-G solvation = -6.498844 kcal Electronic energy + Delta-G solvation = -27013.951455 eV Core-core repulsion = 23217.720829 eV Total energy + Delta-G solvation = -3796.230626 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.82428 -39.15141 -38.28583 -37.66693 -34.78258 -33.90883 -31.76352 -31.39353 -30.07386 -29.98578 -28.58779 -27.23216 -25.66032 -23.62038 -22.94500 -22.43338 -21.65556 -20.21902 -19.35384 -18.38125 -17.65142 -16.68157 -16.46580 -16.22729 -15.94025 -15.56698 -14.99440 -14.61329 -14.50035 -14.12344 -14.02076 -13.84914 -13.42502 -13.35530 -12.97406 -12.64106 -12.45359 -12.31352 -12.03326 -11.96026 -11.76094 -11.64976 -11.22416 -10.88333 -10.83833 -10.62413 -10.53565 -10.31038 -10.10988 -9.86758 -9.46269 -9.26271 -9.08635 -8.79188 -8.36107 -8.09285 -7.68396 -7.67425 -5.95807 -3.95600 1.23476 1.42887 2.24014 2.29098 3.06830 3.30995 3.37648 3.40738 3.42118 3.44128 3.97876 4.45070 4.49402 4.69708 4.97458 5.13291 5.18215 5.24883 5.27030 5.40190 5.47067 5.59829 5.62721 5.68919 5.73149 5.80290 6.01098 6.06500 6.12528 6.23736 6.28534 6.36783 6.48041 6.51403 6.74748 6.84350 6.85766 6.99431 7.26745 7.30532 7.40432 7.46803 7.81997 7.85404 7.90178 7.90756 8.01370 8.34724 8.83756 9.04615 9.66200 11.14025 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003705 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.128715 B = 7555.920184 C = 8669.344687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 O -0.312 6.312 3 C 0.279 3.721 4 N -0.523 5.523 5 C 0.097 3.903 6 C -0.181 4.181 7 C -0.065 4.065 8 C 0.110 3.890 9 N -0.677 5.677 10 C 0.510 3.490 11 O -0.469 6.469 12 C -0.120 4.120 13 C 0.077 3.923 14 H 0.078 0.922 15 C -0.497 4.497 16 H 0.050 0.950 17 C 0.081 3.919 18 N -0.878 5.878 19 Si 0.884 3.116 20 H -0.278 1.278 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.025 4.025 24 C -0.113 4.113 25 C -0.132 4.132 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.122 4.122 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.156 0.844 33 H 0.138 0.862 34 H 0.166 0.834 35 H 0.410 0.590 36 H 0.080 0.920 37 H 0.070 0.930 38 H 0.260 0.740 39 H 0.114 0.886 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.106 0.894 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.326 -2.361 -8.259 14.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.219 6.219 3 C 0.097 3.903 4 N -0.246 5.246 5 C -0.058 4.058 6 C -0.202 4.202 7 C -0.093 4.093 8 C 0.011 3.989 9 N -0.323 5.323 10 C 0.298 3.702 11 O -0.339 6.339 12 C -0.160 4.160 13 C 0.058 3.942 14 H 0.097 0.903 15 C -0.534 4.534 16 H 0.068 0.932 17 C -0.123 4.123 18 N -0.515 5.515 19 Si 0.712 3.288 20 H -0.204 1.204 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.026 4.026 24 C -0.131 4.131 25 C -0.150 4.150 26 C -0.172 4.172 27 C -0.146 4.146 28 C -0.140 4.140 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.111 0.889 32 H 0.173 0.827 33 H 0.156 0.844 34 H 0.183 0.817 35 H 0.245 0.755 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.132 0.868 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -11.560 -1.862 -7.833 14.087 hybrid contribution 0.456 -0.097 1.116 1.209 sum -11.104 -1.959 -6.717 13.125 Atomic orbital electron populations 1.22778 0.77464 1.02593 1.02202 1.86169 1.22680 1.24436 1.88659 1.19506 0.87681 0.85300 0.97833 1.67205 1.40058 0.98570 1.18759 1.22203 0.92991 0.93294 0.97327 1.21942 0.94370 0.99712 1.04139 1.21866 1.02883 0.89369 0.95193 1.17883 0.87382 0.88940 1.04717 1.43853 1.15024 1.10263 1.63187 1.21228 0.80369 0.91726 0.76845 1.90740 1.71671 1.33641 1.37806 1.21813 0.98652 0.94449 1.01090 1.17873 0.86800 0.92378 0.97139 0.90341 1.20636 1.18726 1.22294 0.91776 0.93205 1.24782 0.95209 0.94717 0.97542 1.69872 1.23812 1.22717 1.35104 0.86800 0.77814 0.77660 0.86547 1.20380 1.21355 1.20391 1.20759 0.95790 0.95125 0.90924 1.20975 0.99887 0.92680 0.99551 1.21001 0.95878 0.98366 0.99744 1.20814 0.98340 0.97232 1.00845 1.20990 0.99287 0.93627 1.00723 1.21110 0.95519 0.97882 0.99533 0.92512 0.92572 0.88875 0.82703 0.84445 0.81679 0.75499 0.90149 0.91138 0.93048 0.86761 0.87597 0.87747 0.87576 0.86787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.45 10.38 101.05 1.05 1.50 16 2 O -0.31 -4.24 9.91 -18.91 -0.19 -4.43 16 3 C 0.28 4.25 7.51 -16.95 -0.13 4.12 16 4 N -0.52 -7.48 9.22 -13.18 -0.12 -7.60 16 5 C 0.10 1.22 11.17 -17.54 -0.20 1.03 16 6 C -0.18 -2.40 10.10 -39.46 -0.40 -2.80 16 7 C -0.07 -1.07 8.82 -39.13 -0.35 -1.41 16 8 C 0.11 1.80 6.47 -83.33 -0.54 1.26 16 9 N -0.68 -10.82 5.29 -9.64 -0.05 -10.87 16 10 C 0.51 9.91 7.40 -10.99 -0.08 9.82 16 11 O -0.47 -11.08 12.20 5.54 0.07 -11.02 16 12 C -0.12 -2.22 4.97 -27.88 -0.14 -2.36 16 13 C 0.08 1.77 1.77 -92.92 -0.16 1.61 16 14 H 0.08 2.06 6.80 -51.93 -0.35 1.71 16 15 C -0.50 -13.00 6.29 -34.44 -0.22 -13.21 16 16 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 17 C 0.08 2.25 5.45 -17.82 -0.10 2.15 16 18 N -0.88 -25.24 12.77 55.43 0.71 -24.53 16 19 Si 0.88 21.96 29.54 -169.99 -5.02 16.93 16 20 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 C -0.03 -0.54 4.77 -104.62 -0.50 -1.04 16 24 C -0.11 -2.21 8.88 -39.58 -0.35 -2.56 16 25 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 26 C -0.15 -2.60 10.05 -39.58 -0.40 -3.00 16 27 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 28 C -0.12 -2.48 9.67 -39.58 -0.38 -2.86 16 29 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 30 H 0.06 0.54 8.11 -51.92 -0.42 0.11 16 31 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.16 1.40 8.06 -52.49 -0.42 0.98 16 33 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 34 H 0.17 3.02 5.90 -52.49 -0.31 2.71 16 35 H 0.41 5.39 8.36 -40.82 -0.34 5.04 16 36 H 0.08 1.38 7.90 -51.93 -0.41 0.97 16 37 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 38 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 39 H 0.11 2.17 7.82 -52.49 -0.41 1.76 16 40 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 41 H 0.10 1.47 8.06 -52.49 -0.42 1.04 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 2.31 7.95 -52.48 -0.42 1.90 16 LS Contribution 367.69 15.07 5.54 5.54 Total: -1.00 -31.97 367.69 -8.34 -40.31 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -5.59 Total: 8.81 kcal Atomic # 6 Polarization: -9.45 SS G_CDS: -3.68 Total: -13.14 kcal Atomic # 7 Polarization: -43.55 SS G_CDS: 0.54 Total: -43.01 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.12 Total: -15.44 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -31.97 -8.34 -40.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354582375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.809 kcal (2) G-P(sol) polarization free energy of solvation -31.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds