Wall clock time and date at job start Tue Mar 31 2020 14:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35735 * 116.99995 * 2 1 4 4 N 1.32161 * 119.73011 * 359.97438 * 3 2 1 5 5 C 1.31992 * 121.72358 * 179.97438 * 4 3 2 6 6 C 1.38080 * 120.96838 * 0.02562 * 5 4 3 7 7 C 1.38728 * 119.35234 * 359.97438 * 6 5 4 8 8 C 1.38967 * 118.42255 * 0.02562 * 7 6 5 9 9 N 1.40126 * 120.50385 * 179.97438 * 8 7 6 10 10 C 1.34775 * 120.00110 * 24.56679 * 9 8 7 11 11 O 1.21295 * 120.00198 * 5.59420 * 10 9 8 12 12 C 1.50698 * 120.00099 * 185.59733 * 10 9 8 13 13 C 1.52999 * 109.47153 * 179.97438 * 12 10 9 14 14 H 1.09005 * 109.47237 * 304.99574 * 13 12 10 15 15 C 1.50700 * 109.47543 * 65.00093 * 13 12 10 16 16 H 1.08001 * 119.99844 * 34.97661 * 15 13 12 17 17 C 1.37879 * 120.00063 * 214.98628 * 15 13 12 18 18 N 1.31515 * 120.00039 * 4.99779 * 17 15 13 19 19 Si 1.86793 * 119.99678 * 185.00316 * 17 15 13 20 20 H 1.48498 * 109.47418 * 59.99609 * 19 17 15 21 21 H 1.48502 * 109.47315 * 179.97438 * 19 17 15 22 22 H 1.48507 * 109.47376 * 299.99561 * 19 17 15 23 23 C 1.50705 * 109.47246 * 185.00152 * 13 12 10 24 24 C 1.38237 * 119.99665 * 294.74839 * 23 13 12 25 25 C 1.38235 * 119.99838 * 179.78628 * 24 23 13 26 26 C 1.38237 * 119.99815 * 0.44289 * 25 24 23 27 27 C 1.38233 * 120.00269 * 359.81093 * 26 25 24 28 28 C 1.38235 * 120.00224 * 115.02061 * 23 13 12 29 29 H 1.08997 * 109.47573 * 299.99838 * 1 2 3 30 30 H 1.09007 * 109.47025 * 59.99920 * 1 2 3 31 31 H 1.08999 * 109.47365 * 179.97438 * 1 2 3 32 32 H 1.08000 * 119.51412 * 180.02562 * 5 4 3 33 33 H 1.08000 * 120.31981 * 179.97438 * 6 5 4 34 34 H 1.07999 * 120.79167 * 179.73110 * 7 6 5 35 35 H 0.96994 * 120.00041 * 204.55896 * 9 8 7 36 36 H 1.08999 * 109.47107 * 299.99658 * 12 10 9 37 37 H 1.09005 * 109.47328 * 59.99691 * 12 10 9 38 38 H 0.96997 * 119.99477 * 180.02562 * 18 17 15 39 39 H 1.07998 * 120.00366 * 359.97438 * 24 23 13 40 40 H 1.08004 * 120.00271 * 180.27374 * 25 24 23 41 41 H 1.07998 * 120.00043 * 179.83346 * 26 25 24 42 42 H 1.08000 * 120.00619 * 180.02562 * 27 26 25 43 43 H 1.08003 * 119.99985 * 359.97426 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2094 0.0000 4 7 1.3202 2.3144 -0.0005 5 6 1.8782 3.5106 0.0000 6 6 3.2515 3.6540 0.0005 7 6 4.0534 2.5220 0.0011 8 6 3.4385 1.2758 0.0005 9 7 4.2064 0.1037 0.0005 10 6 5.4635 0.1217 0.4863 11 8 5.8950 1.1242 1.0155 12 6 6.3331 -1.1038 0.3718 13 6 7.7006 -0.8188 0.9961 14 1 8.1345 0.0669 0.5319 15 6 7.5381 -0.5821 2.4755 16 1 6.7916 -1.1302 3.0312 17 6 8.3422 0.3342 3.1195 18 7 9.1828 1.0721 2.4278 19 14 8.2379 0.5272 4.9745 20 1 8.5725 -0.7644 5.6263 21 1 9.1987 1.5688 5.4187 22 1 6.8598 0.9305 5.3535 23 6 8.6104 -1.9994 0.7733 24 6 8.3226 -3.2151 1.3651 25 6 9.1547 -4.2992 1.1571 26 6 10.2795 -4.1652 0.3648 27 6 10.5701 -2.9481 -0.2227 28 6 9.7357 -1.8652 -0.0183 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.2513 4.3901 -0.0001 33 1 3.6969 4.6379 0.0005 34 1 5.1300 2.6072 -0.0028 35 1 3.8333 -0.7206 -0.3489 36 1 5.8605 -1.9349 0.8953 37 1 6.4607 -1.3619 -0.6795 38 1 9.7487 1.7165 2.8810 39 1 7.4461 -3.3188 1.9874 40 1 8.9275 -5.2502 1.6159 41 1 10.9311 -5.0114 0.2045 42 1 11.4487 -2.8435 -0.8421 43 1 9.9626 -0.9143 -0.4775 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000354582375.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:39:00 Heat of formation + Delta-G solvation = -27.031940 kcal Electronic energy + Delta-G solvation = -27014.841837 eV Core-core repulsion = 23217.720829 eV Total energy + Delta-G solvation = -3797.121007 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.01811 -40.57639 -39.72854 -38.73887 -36.24517 -35.58324 -33.48874 -32.73980 -31.50622 -31.24731 -29.98010 -28.14848 -27.48413 -25.09555 -24.17056 -23.75226 -23.11773 -21.67607 -20.91973 -19.50678 -18.88521 -18.40909 -18.02024 -17.47463 -17.13666 -16.81814 -16.47566 -16.14770 -15.93726 -15.63718 -15.42313 -15.01580 -14.93191 -14.48136 -14.34370 -14.08920 -13.98006 -13.67320 -13.60282 -13.38976 -13.18069 -12.83750 -12.65906 -12.55657 -12.52949 -12.15995 -11.93012 -11.83150 -11.71948 -11.29380 -11.10142 -10.96319 -10.54160 -10.43989 -10.13172 -9.54365 -9.20359 -8.88654 -8.03198 -6.05421 0.09093 0.25405 0.77755 0.83159 1.36493 1.38333 1.42911 1.84658 2.05802 2.11193 2.45848 2.82816 3.18021 3.35960 3.43616 3.82766 3.96851 4.14290 4.25841 4.32885 4.36663 4.40603 4.46541 4.47531 4.51753 4.54971 4.62071 4.73636 4.79124 4.92895 4.93499 4.98757 5.20928 5.21169 5.35567 5.37978 5.52092 5.61918 5.67215 5.78487 5.84165 5.95270 6.16965 6.22981 6.41438 6.46884 6.55341 6.79686 7.02411 7.38820 7.56988 9.06024 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.012320 B = 0.003705 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.128715 B = 7555.920184 C = 8669.344687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.320 6.320 3 C 0.278 3.722 4 N -0.527 5.527 5 C 0.109 3.891 6 C -0.181 4.181 7 C -0.084 4.084 8 C 0.080 3.920 9 N -0.661 5.661 10 C 0.510 3.490 11 O -0.521 6.521 12 C -0.113 4.113 13 C 0.080 3.920 14 H 0.034 0.966 15 C -0.488 4.488 16 H 0.045 0.955 17 C 0.029 3.971 18 N -0.912 5.912 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.289 1.289 22 H -0.284 1.284 23 C -0.049 4.049 24 C -0.126 4.126 25 C -0.127 4.127 26 C -0.147 4.147 27 C -0.128 4.128 28 C -0.145 4.145 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.123 0.877 32 H 0.198 0.802 33 H 0.163 0.837 34 H 0.137 0.863 35 H 0.423 0.577 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.253 0.747 39 H 0.115 0.885 40 H 0.140 0.860 41 H 0.143 0.857 42 H 0.133 0.867 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.745 -4.357 -8.593 15.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.228 6.228 3 C 0.097 3.903 4 N -0.251 5.251 5 C -0.046 4.046 6 C -0.201 4.201 7 C -0.112 4.112 8 C -0.018 4.018 9 N -0.308 5.308 10 C 0.299 3.701 11 O -0.395 6.395 12 C -0.153 4.153 13 C 0.061 3.939 14 H 0.053 0.947 15 C -0.526 4.526 16 H 0.063 0.937 17 C -0.170 4.170 18 N -0.552 5.552 19 Si 0.757 3.243 20 H -0.193 1.193 21 H -0.214 1.214 22 H -0.210 1.210 23 C -0.049 4.049 24 C -0.144 4.144 25 C -0.145 4.145 26 C -0.164 4.164 27 C -0.146 4.146 28 C -0.164 4.164 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.215 0.785 33 H 0.180 0.820 34 H 0.155 0.845 35 H 0.261 0.739 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.062 0.938 39 H 0.133 0.867 40 H 0.158 0.842 41 H 0.161 0.839 42 H 0.150 0.850 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -13.031 -3.904 -8.184 15.875 hybrid contribution 0.785 0.490 1.122 1.454 sum -12.247 -3.414 -7.062 14.543 Atomic orbital electron populations 1.23054 0.75491 1.04654 1.02270 1.86156 1.24611 1.23691 1.88334 1.19547 0.87288 0.86200 0.97306 1.67348 1.39906 0.98869 1.18976 1.22902 0.93066 0.94016 0.94621 1.22229 0.94752 0.99819 1.03302 1.21809 1.02033 0.90924 0.96441 1.18025 0.88213 0.88777 1.06821 1.43514 1.13930 1.11051 1.62326 1.21349 0.81271 0.91183 0.76275 1.90733 1.72954 1.35274 1.40500 1.21696 0.96389 0.94594 1.02615 1.17650 0.89202 0.91826 0.95196 0.94718 1.20924 1.17266 1.20958 0.93484 0.93720 1.25409 0.95737 0.95281 1.00607 1.70016 1.25285 1.23920 1.35954 0.86072 0.77196 0.77830 0.83235 1.19316 1.21439 1.20973 1.20569 0.96080 0.95333 0.92931 1.21058 1.00783 0.92771 0.99778 1.21382 0.95209 0.98868 0.99055 1.21274 0.98241 0.97778 0.99157 1.21295 0.99437 0.93197 1.00671 1.21143 0.96281 0.98409 1.00533 0.92829 0.92036 0.85905 0.78531 0.81954 0.84512 0.73903 0.88315 0.88460 0.93752 0.86667 0.84246 0.83916 0.84953 0.88465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 10.38 113.37 1.18 1.89 16 2 O -0.32 -8.30 9.91 -90.59 -0.90 -9.19 16 3 C 0.28 8.28 7.51 84.94 0.64 8.91 16 4 N -0.53 -14.18 9.22 -308.48 -2.84 -17.03 16 5 C 0.11 2.50 11.17 84.63 0.95 3.44 16 6 C -0.18 -4.67 10.10 22.35 0.23 -4.44 16 7 C -0.08 -2.86 8.82 22.56 0.20 -2.66 16 8 C 0.08 2.66 6.47 38.29 0.25 2.91 16 9 N -0.66 -21.61 5.29 -302.81 -1.60 -23.22 16 10 C 0.51 20.68 7.40 87.66 0.65 21.32 16 11 O -0.52 -26.28 12.20 -3.08 -0.04 -26.32 16 12 C -0.11 -4.28 4.97 29.85 0.15 -4.13 16 13 C 0.08 3.85 1.77 -12.28 -0.02 3.83 16 14 H 0.03 1.95 6.80 -2.38 -0.02 1.94 16 15 C -0.49 -26.43 6.29 25.60 0.16 -26.27 16 16 H 0.04 2.40 7.82 -2.91 -0.02 2.38 16 17 C 0.03 1.66 5.45 84.66 0.46 2.12 16 18 N -0.91 -55.29 12.77 21.45 0.27 -55.01 16 19 Si 0.93 46.30 29.54 68.60 2.03 48.32 16 20 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 22 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 23 C -0.05 -2.10 4.77 -19.86 -0.09 -2.19 16 24 C -0.13 -4.79 8.88 22.27 0.20 -4.59 16 25 C -0.13 -4.03 10.05 22.27 0.22 -3.81 16 26 C -0.15 -4.41 10.05 22.27 0.22 -4.19 16 27 C -0.13 -4.32 10.05 22.27 0.22 -4.10 16 28 C -0.15 -6.00 9.67 22.27 0.22 -5.79 16 29 H 0.05 1.00 8.11 -2.39 -0.02 0.98 16 30 H 0.06 1.04 8.11 -2.38 -0.02 1.02 16 31 H 0.12 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.20 2.77 8.06 -2.91 -0.02 2.75 16 33 H 0.16 3.26 8.06 -2.91 -0.02 3.23 16 34 H 0.14 5.46 5.90 -2.91 -0.02 5.44 16 35 H 0.42 11.04 8.36 -92.71 -0.78 10.27 16 36 H 0.10 3.35 7.90 -2.39 -0.02 3.33 16 37 H 0.10 3.12 8.14 -2.38 -0.02 3.10 16 38 H 0.25 14.94 8.31 -92.71 -0.77 14.17 16 39 H 0.12 4.26 7.82 -2.91 -0.02 4.24 16 40 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 41 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 42 H 0.13 3.69 8.06 -2.91 -0.02 3.66 16 43 H 0.10 4.21 7.95 -2.91 -0.02 4.19 16 Total: -1.00 -73.51 367.69 3.00 -70.51 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: 0.26 Total: 29.66 kcal Atomic # 6 Polarization: -23.55 SS G_CDS: 5.82 Total: -17.73 kcal Atomic # 7 Polarization: -91.08 SS G_CDS: -4.17 Total: -95.25 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.94 Total: -35.51 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.32 kcal Total: -73.51 3.00 -70.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000354582375.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.476 kcal (2) G-P(sol) polarization free energy of solvation -73.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds