Wall clock time and date at job start Tue Mar 31 2020 14:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35951 * 119.61845 * 2 1 4 4 C 1.35259 * 120.82385 * 179.71025 * 3 2 1 5 5 C 1.40196 * 120.03724 * 0.52557 * 4 3 2 6 6 C 1.36818 * 119.23821 * 359.48781 * 5 4 3 7 7 N 1.40146 * 120.40221 * 180.27557 * 6 5 4 8 8 C 1.34775 * 120.00091 * 121.01122 * 7 6 5 9 9 O 1.21305 * 119.99924 * 4.82180 * 8 7 6 10 10 C 1.50701 * 120.00062 * 184.82319 * 8 7 6 11 11 C 1.53006 * 109.47169 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46964 * 306.43872 * 11 10 8 13 13 C 1.50697 * 109.47000 * 66.43211 * 11 10 8 14 14 H 1.08000 * 120.00159 * 30.96246 * 13 11 10 15 15 C 1.37878 * 120.00067 * 210.96432 * 13 11 10 16 16 N 1.31511 * 120.00186 * 188.71559 * 15 13 11 17 17 Si 1.86806 * 119.99835 * 8.70609 * 15 13 11 18 18 H 1.48502 * 109.46930 * 93.84534 * 17 15 13 19 19 H 1.48496 * 109.47110 * 213.84259 * 17 15 13 20 20 H 1.48491 * 109.47141 * 333.84599 * 17 15 13 21 21 C 1.50697 * 109.47134 * 186.43408 * 11 10 8 22 22 C 1.38233 * 119.99630 * 299.30933 * 21 11 10 23 23 C 1.38238 * 119.99516 * 179.78718 * 22 21 11 24 24 C 1.38240 * 119.99895 * 0.44483 * 23 22 21 25 25 C 1.38229 * 120.00193 * 359.80769 * 24 23 22 26 26 C 1.38229 * 120.00037 * 119.58100 * 21 11 10 27 27 C 1.34670 * 119.61211 * 179.97438 * 2 1 3 28 28 O 1.22063 * 120.03526 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.46979 * 270.02327 * 1 2 3 30 30 H 1.09006 * 109.47136 * 30.01827 * 1 2 3 31 31 H 1.08998 * 109.47457 * 150.01630 * 1 2 3 32 32 H 1.08003 * 119.58253 * 359.97438 * 3 2 1 33 33 H 1.08009 * 119.98170 * 180.26072 * 4 3 2 34 34 H 1.08004 * 120.38030 * 179.75710 * 5 4 3 35 35 H 0.97002 * 119.99744 * 301.00523 * 7 6 5 36 36 H 1.09000 * 109.46955 * 299.99854 * 10 8 7 37 37 H 1.08997 * 109.47136 * 59.99727 * 10 8 7 38 38 H 0.97005 * 120.00376 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.00448 * 0.02562 * 22 21 11 40 40 H 1.08001 * 120.00060 * 180.27304 * 23 22 21 41 41 H 1.08004 * 119.99322 * 179.83747 * 24 23 22 42 42 H 1.07997 * 120.00105 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.99893 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1368 1.1819 0.0000 4 6 3.4891 1.2103 0.0059 5 6 4.2163 0.0117 0.0009 6 6 3.5422 -1.1789 0.0008 7 7 4.2446 -2.3916 0.0018 8 6 4.0613 -3.2758 1.0023 9 8 3.2253 -3.0622 1.8549 10 6 4.8950 -4.5298 1.0618 11 6 4.4902 -5.3537 2.2860 12 1 4.5441 -4.7295 3.1779 13 6 3.0807 -5.8567 2.1093 14 1 2.7039 -6.0713 1.1201 15 6 2.2721 -6.0429 3.2104 16 7 1.1080 -6.6403 3.0779 17 14 2.8301 -5.4467 4.8905 18 1 2.2911 -4.0850 5.1366 19 1 2.3287 -6.3740 5.9364 20 1 4.3138 -5.4071 4.9340 21 6 5.4266 -6.5250 2.4351 22 6 5.5197 -7.4679 1.4286 23 6 6.3819 -8.5400 1.5636 24 6 7.1442 -8.6740 2.7090 25 6 7.0472 -7.7338 3.7177 26 6 6.1883 -6.6594 3.5808 27 6 2.1304 -1.1708 0.0005 28 8 1.5136 -2.2241 0.0015 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 1.5838 2.1096 -0.0004 33 1 4.0090 2.1570 0.0101 34 1 5.2962 0.0280 0.0016 35 1 4.8627 -2.5946 -0.7178 36 1 4.7326 -5.1173 0.1582 37 1 5.9489 -4.2622 1.1367 38 1 0.5389 -6.7710 3.8525 39 1 4.9217 -7.3650 0.5352 40 1 6.4579 -9.2744 0.7754 41 1 7.8159 -9.5130 2.8155 42 1 7.6431 -7.8383 4.6123 43 1 6.1126 -5.9248 4.3689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356006837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:43 Heat of formation + Delta-G solvation = 2.806178 kcal Electronic energy + Delta-G solvation = -27439.357978 eV Core-core repulsion = 23643.530848 eV Total energy + Delta-G solvation = -3795.827129 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.25749 -39.09936 -38.29725 -36.63976 -35.43401 -33.94346 -32.83862 -31.56414 -30.15760 -29.51681 -28.48361 -27.62806 -25.91512 -23.50207 -22.66661 -22.39520 -21.80276 -20.38170 -19.18580 -17.73725 -17.35878 -16.88059 -16.68498 -16.41370 -15.91296 -15.58609 -15.17897 -14.56943 -14.38933 -14.29868 -13.90630 -13.78365 -13.08997 -13.04667 -12.79236 -12.69701 -12.53421 -12.48549 -12.31418 -12.14077 -11.84026 -11.76517 -11.64415 -10.99946 -10.72787 -10.51434 -10.35561 -10.24468 -9.79542 -9.74976 -9.44236 -9.14602 -8.93117 -8.86177 -8.28511 -8.14168 -7.75528 -7.55510 -5.88604 -3.83197 0.84428 2.00564 2.15875 2.21099 2.64307 3.46850 3.49677 3.52443 3.57953 3.67010 3.82676 4.53074 4.59075 4.63563 4.65833 4.96725 5.12761 5.23780 5.28743 5.39282 5.57312 5.61003 5.61989 5.64804 5.75119 5.80878 5.97743 6.03383 6.06814 6.13836 6.18788 6.30267 6.39341 6.51456 6.65705 6.76254 6.89260 6.97653 7.09701 7.20273 7.21040 7.33746 7.66462 7.79170 7.90469 7.97283 8.28747 8.63454 9.06603 9.13992 9.76619 11.24697 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.003884 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.876692 B = 7207.379056 C = 8101.531226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.062 3.938 2 N -0.503 5.503 3 C 0.117 3.883 4 C -0.221 4.221 5 C -0.056 4.056 6 C 0.048 3.952 7 N -0.682 5.682 8 C 0.516 3.484 9 O -0.475 6.475 10 C -0.113 4.113 11 C 0.054 3.946 12 H 0.051 0.949 13 C -0.483 4.483 14 H 0.071 0.929 15 C 0.084 3.916 16 N -0.896 5.896 17 Si 0.871 3.129 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.256 1.256 21 C -0.036 4.036 22 C -0.103 4.103 23 C -0.127 4.127 24 C -0.151 4.151 25 C -0.126 4.126 26 C -0.138 4.138 27 C 0.506 3.494 28 O -0.501 6.501 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.158 0.842 33 H 0.144 0.856 34 H 0.134 0.866 35 H 0.403 0.597 36 H 0.086 0.914 37 H 0.070 0.930 38 H 0.260 0.740 39 H 0.119 0.881 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.600 15.401 -8.176 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 N -0.216 5.216 3 C -0.009 4.009 4 C -0.246 4.246 5 C -0.080 4.080 6 C -0.050 4.050 7 N -0.334 5.334 8 C 0.303 3.697 9 O -0.344 6.344 10 C -0.153 4.153 11 C 0.034 3.966 12 H 0.069 0.931 13 C -0.520 4.520 14 H 0.090 0.910 15 C -0.118 4.118 16 N -0.534 5.534 17 Si 0.699 3.301 18 H -0.205 1.205 19 H -0.222 1.222 20 H -0.181 1.181 21 C -0.036 4.036 22 C -0.121 4.121 23 C -0.145 4.145 24 C -0.169 4.169 25 C -0.144 4.144 26 C -0.156 4.156 27 C 0.303 3.697 28 O -0.377 6.377 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.112 0.888 32 H 0.175 0.825 33 H 0.161 0.839 34 H 0.151 0.849 35 H 0.239 0.761 36 H 0.104 0.896 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.137 0.863 40 H 0.128 0.872 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 7.340 14.682 -7.385 17.999 hybrid contribution 0.317 0.247 0.622 0.741 sum 7.657 14.929 -6.762 18.090 Atomic orbital electron populations 1.22096 0.77347 1.04529 1.03949 1.45405 1.09028 1.06534 1.60657 1.21840 0.93846 0.89288 0.95968 1.20371 0.92373 0.98768 1.13057 1.21392 1.00653 0.91008 0.94920 1.18209 0.90277 0.87412 1.09092 1.43450 1.45501 1.16972 1.27433 1.20987 0.83949 0.84122 0.80636 1.90751 1.31217 1.74235 1.38149 1.21646 0.97243 0.93590 1.02840 1.18184 0.94688 0.89858 0.93833 0.93076 1.20582 0.93070 1.43304 0.95046 0.91044 1.24881 0.94613 0.93659 0.98637 1.69919 1.11294 1.41722 1.30440 0.86958 0.79797 0.78816 0.84489 1.20464 1.22228 1.18091 1.20735 0.92079 0.98189 0.92622 1.20958 0.97432 0.94022 0.99714 1.21041 0.97640 0.98176 0.97646 1.20847 1.01512 0.99504 0.95035 1.20960 0.99564 0.95478 0.98410 1.21188 0.97336 0.98742 0.98360 1.17308 0.88909 0.83254 0.80252 1.91105 1.68986 1.28855 1.48788 0.90683 0.90017 0.88826 0.82482 0.83850 0.84860 0.76098 0.89586 0.91136 0.93013 0.86336 0.87233 0.87482 0.87427 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.67 10.36 59.84 0.62 1.29 16 2 N -0.50 -6.72 2.99 -126.96 -0.38 -7.10 16 3 C 0.12 1.07 10.28 -16.79 -0.17 0.89 16 4 C -0.22 -1.97 10.00 -39.91 -0.40 -2.37 16 5 C -0.06 -0.64 10.01 -39.36 -0.39 -1.03 16 6 C 0.05 0.78 5.78 -83.45 -0.48 0.29 16 7 N -0.68 -11.29 5.18 -9.72 -0.05 -11.35 16 8 C 0.52 11.00 7.09 -10.99 -0.08 10.93 16 9 O -0.48 -12.72 13.51 -12.96 -0.18 -12.90 16 10 C -0.11 -2.22 4.89 -27.88 -0.14 -2.35 16 11 C 0.05 1.29 1.21 -92.92 -0.11 1.17 16 12 H 0.05 1.30 4.67 -51.93 -0.24 1.06 16 13 C -0.48 -14.07 7.13 -34.44 -0.25 -14.32 16 14 H 0.07 2.28 8.06 -52.49 -0.42 1.86 16 15 C 0.08 2.61 5.47 -17.82 -0.10 2.51 16 16 N -0.90 -29.42 13.96 55.43 0.77 -28.65 16 17 Si 0.87 23.75 27.35 -169.99 -4.65 19.10 16 18 H -0.28 -7.85 7.11 56.52 0.40 -7.45 16 19 H -0.30 -8.00 7.11 56.52 0.40 -7.60 16 20 H -0.26 -6.37 4.32 56.52 0.24 -6.12 16 21 C -0.04 -0.78 4.75 -104.63 -0.50 -1.27 16 22 C -0.10 -2.08 8.87 -39.58 -0.35 -2.43 16 23 C -0.13 -2.24 10.05 -39.58 -0.40 -2.64 16 24 C -0.15 -2.54 10.05 -39.58 -0.40 -2.94 16 25 C -0.13 -2.24 10.05 -39.59 -0.40 -2.64 16 26 C -0.14 -2.82 9.16 -39.59 -0.36 -3.19 16 27 C 0.51 9.37 6.93 -15.19 -0.11 9.27 16 28 O -0.50 -12.03 14.86 -13.64 -0.20 -12.23 16 29 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.51 8.01 -51.93 -0.42 0.09 16 31 H 0.09 1.20 7.39 -51.93 -0.38 0.82 16 32 H 0.16 0.72 8.04 -52.48 -0.42 0.30 16 33 H 0.14 0.79 8.06 -52.48 -0.42 0.36 16 34 H 0.13 1.17 8.06 -52.48 -0.42 0.75 16 35 H 0.40 4.97 8.83 -40.82 -0.36 4.60 16 36 H 0.09 1.60 7.66 -51.93 -0.40 1.20 16 37 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.26 8.10 8.31 -40.82 -0.34 7.76 16 39 H 0.12 2.36 7.69 -52.49 -0.40 1.96 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 42 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 43 H 0.11 2.29 6.54 -52.48 -0.34 1.94 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -41.51 360.20 -8.91 -50.42 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.64 Total: 6.10 kcal Atomic # 6 Polarization: -4.82 SS G_CDS: -4.01 Total: -8.82 kcal Atomic # 7 Polarization: -47.44 SS G_CDS: 0.34 Total: -47.10 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: -0.38 Total: -25.13 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.65 Total: 19.10 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -41.51 -8.91 -50.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356006837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.223 kcal (2) G-P(sol) polarization free energy of solvation -41.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds