Wall clock time and date at job start Tue Mar 31 2020 14:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35951 * 119.61845 * 2 1 4 4 C 1.35259 * 120.82385 * 179.71025 * 3 2 1 5 5 C 1.40196 * 120.03724 * 0.52557 * 4 3 2 6 6 C 1.36818 * 119.23821 * 359.48781 * 5 4 3 7 7 N 1.40146 * 120.40221 * 180.27557 * 6 5 4 8 8 C 1.34775 * 120.00091 * 121.01122 * 7 6 5 9 9 O 1.21305 * 119.99924 * 4.82180 * 8 7 6 10 10 C 1.50701 * 120.00062 * 184.82319 * 8 7 6 11 11 C 1.53006 * 109.47169 * 179.97438 * 10 8 7 12 12 H 1.09003 * 109.46964 * 306.43872 * 11 10 8 13 13 C 1.50697 * 109.47000 * 66.43211 * 11 10 8 14 14 H 1.08000 * 120.00159 * 30.96246 * 13 11 10 15 15 C 1.37878 * 120.00067 * 210.96432 * 13 11 10 16 16 N 1.31511 * 120.00186 * 188.71559 * 15 13 11 17 17 Si 1.86806 * 119.99835 * 8.70609 * 15 13 11 18 18 H 1.48502 * 109.46930 * 93.84534 * 17 15 13 19 19 H 1.48496 * 109.47110 * 213.84259 * 17 15 13 20 20 H 1.48491 * 109.47141 * 333.84599 * 17 15 13 21 21 C 1.50697 * 109.47134 * 186.43408 * 11 10 8 22 22 C 1.38233 * 119.99630 * 299.30933 * 21 11 10 23 23 C 1.38238 * 119.99516 * 179.78718 * 22 21 11 24 24 C 1.38240 * 119.99895 * 0.44483 * 23 22 21 25 25 C 1.38229 * 120.00193 * 359.80769 * 24 23 22 26 26 C 1.38229 * 120.00037 * 119.58100 * 21 11 10 27 27 C 1.34670 * 119.61211 * 179.97438 * 2 1 3 28 28 O 1.22063 * 120.03526 * 359.97438 * 27 2 1 29 29 H 1.08997 * 109.46979 * 270.02327 * 1 2 3 30 30 H 1.09006 * 109.47136 * 30.01827 * 1 2 3 31 31 H 1.08998 * 109.47457 * 150.01630 * 1 2 3 32 32 H 1.08003 * 119.58253 * 359.97438 * 3 2 1 33 33 H 1.08009 * 119.98170 * 180.26072 * 4 3 2 34 34 H 1.08004 * 120.38030 * 179.75710 * 5 4 3 35 35 H 0.97002 * 119.99744 * 301.00523 * 7 6 5 36 36 H 1.09000 * 109.46955 * 299.99854 * 10 8 7 37 37 H 1.08997 * 109.47136 * 59.99727 * 10 8 7 38 38 H 0.97005 * 120.00376 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.00448 * 0.02562 * 22 21 11 40 40 H 1.08001 * 120.00060 * 180.27304 * 23 22 21 41 41 H 1.08004 * 119.99322 * 179.83747 * 24 23 22 42 42 H 1.07997 * 120.00105 * 180.02562 * 25 24 23 43 43 H 1.08003 * 119.99893 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1368 1.1819 0.0000 4 6 3.4891 1.2103 0.0059 5 6 4.2163 0.0117 0.0009 6 6 3.5422 -1.1789 0.0008 7 7 4.2446 -2.3916 0.0018 8 6 4.0613 -3.2758 1.0023 9 8 3.2253 -3.0622 1.8549 10 6 4.8950 -4.5298 1.0618 11 6 4.4902 -5.3537 2.2860 12 1 4.5441 -4.7295 3.1779 13 6 3.0807 -5.8567 2.1093 14 1 2.7039 -6.0713 1.1201 15 6 2.2721 -6.0429 3.2104 16 7 1.1080 -6.6403 3.0779 17 14 2.8301 -5.4467 4.8905 18 1 2.2911 -4.0850 5.1366 19 1 2.3287 -6.3740 5.9364 20 1 4.3138 -5.4071 4.9340 21 6 5.4266 -6.5250 2.4351 22 6 5.5197 -7.4679 1.4286 23 6 6.3819 -8.5400 1.5636 24 6 7.1442 -8.6740 2.7090 25 6 7.0472 -7.7338 3.7177 26 6 6.1883 -6.6594 3.5808 27 6 2.1304 -1.1708 0.0005 28 8 1.5136 -2.2241 0.0015 29 1 -0.3633 0.0004 1.0276 30 1 -0.3634 0.8899 -0.5141 31 1 -0.3634 -0.8901 -0.5136 32 1 1.5838 2.1096 -0.0004 33 1 4.0090 2.1570 0.0101 34 1 5.2962 0.0280 0.0016 35 1 4.8627 -2.5946 -0.7178 36 1 4.7326 -5.1173 0.1582 37 1 5.9489 -4.2622 1.1367 38 1 0.5389 -6.7710 3.8525 39 1 4.9217 -7.3650 0.5352 40 1 6.4579 -9.2744 0.7754 41 1 7.8159 -9.5130 2.8155 42 1 7.6431 -7.8383 4.6123 43 1 6.1126 -5.9248 4.3689 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356006837.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:42 Heat of formation + Delta-G solvation = -27.376858 kcal Electronic energy + Delta-G solvation = -27440.666812 eV Core-core repulsion = 23643.530848 eV Total energy + Delta-G solvation = -3797.135964 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.38281 -40.64359 -39.77385 -37.89742 -36.73786 -35.75629 -34.07626 -33.67990 -31.61590 -30.83405 -29.80961 -28.59944 -27.82892 -24.90284 -23.91162 -23.70993 -23.27041 -21.84297 -20.86692 -19.08004 -18.86592 -18.52715 -18.00399 -17.63835 -17.25140 -16.79780 -16.51896 -16.28404 -16.03644 -15.52121 -15.41808 -15.24809 -14.87249 -14.55355 -14.23334 -14.17462 -13.99184 -13.70351 -13.55721 -13.42197 -13.28709 -13.08049 -12.90672 -12.75259 -12.67073 -12.12654 -11.94341 -11.82836 -11.55113 -11.40963 -11.12313 -10.96275 -10.65212 -10.56299 -10.15016 -9.61904 -9.30926 -8.66975 -8.25607 -6.20502 -0.11978 0.68548 0.73480 1.00128 1.22921 1.32848 1.36260 1.60532 2.00046 2.37045 2.41622 2.72567 3.06704 3.22901 3.68623 3.92406 4.09170 4.11384 4.13704 4.27180 4.29110 4.32386 4.35565 4.42070 4.47849 4.51055 4.62796 4.71681 4.81675 4.85550 4.87845 5.06049 5.14208 5.19958 5.29562 5.38154 5.39877 5.63477 5.67106 5.76932 5.82371 5.84756 6.02493 6.13839 6.31607 6.35510 6.66881 6.78021 7.09109 7.41266 7.58835 8.92699 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015484 B = 0.003884 C = 0.003455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.876692 B = 7207.379056 C = 8101.531226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.502 5.502 3 C 0.128 3.872 4 C -0.221 4.221 5 C -0.010 4.010 6 C -0.027 4.027 7 N -0.662 5.662 8 C 0.509 3.491 9 O -0.543 6.543 10 C -0.108 4.108 11 C 0.057 3.943 12 H 0.036 0.964 13 C -0.461 4.461 14 H 0.022 0.978 15 C 0.015 3.985 16 N -0.955 5.955 17 Si 0.927 3.073 18 H -0.298 1.298 19 H -0.291 1.291 20 H -0.217 1.217 21 C -0.060 4.060 22 C -0.122 4.122 23 C -0.124 4.124 24 C -0.139 4.139 25 C -0.122 4.122 26 C -0.154 4.154 27 C 0.482 3.518 28 O -0.590 6.590 29 H 0.069 0.931 30 H 0.140 0.860 31 H 0.059 0.941 32 H 0.217 0.783 33 H 0.196 0.804 34 H 0.167 0.833 35 H 0.420 0.580 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.257 0.743 39 H 0.105 0.895 40 H 0.139 0.861 41 H 0.148 0.852 42 H 0.142 0.858 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.925 18.201 -8.143 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 N -0.213 5.213 3 C 0.002 3.998 4 C -0.244 4.244 5 C -0.034 4.034 6 C -0.124 4.124 7 N -0.314 5.314 8 C 0.298 3.702 9 O -0.417 6.417 10 C -0.148 4.148 11 C 0.038 3.962 12 H 0.054 0.946 13 C -0.499 4.499 14 H 0.040 0.960 15 C -0.180 4.180 16 N -0.597 5.597 17 Si 0.753 3.247 18 H -0.225 1.225 19 H -0.218 1.218 20 H -0.140 1.140 21 C -0.061 4.061 22 C -0.140 4.140 23 C -0.142 4.142 24 C -0.157 4.157 25 C -0.140 4.140 26 C -0.172 4.172 27 C 0.283 3.717 28 O -0.475 6.475 29 H 0.088 0.912 30 H 0.158 0.842 31 H 0.078 0.922 32 H 0.234 0.766 33 H 0.213 0.787 34 H 0.185 0.815 35 H 0.259 0.741 36 H 0.108 0.892 37 H 0.133 0.867 38 H 0.066 0.934 39 H 0.123 0.877 40 H 0.157 0.843 41 H 0.166 0.834 42 H 0.160 0.840 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 11.750 17.568 -7.416 22.398 hybrid contribution -0.938 -0.378 0.418 1.094 sum 10.812 17.190 -6.998 21.479 Atomic orbital electron populations 1.22290 0.76308 1.05723 1.04018 1.45558 1.10137 1.06822 1.58811 1.22949 0.94819 0.89291 0.92696 1.21074 0.92415 0.99612 1.11268 1.21919 1.02455 0.89966 0.89053 1.18378 0.89626 0.88467 1.15946 1.43009 1.45091 1.16858 1.26426 1.21271 0.83136 0.84958 0.80849 1.90709 1.33997 1.75942 1.41071 1.21579 0.99442 0.92746 1.01058 1.18026 0.92193 0.91052 0.94964 0.94623 1.20781 0.95989 1.40754 0.92388 0.96003 1.25715 0.94911 0.94607 1.02799 1.70080 1.13235 1.45138 1.31281 0.86072 0.81660 0.76902 0.80062 1.22540 1.21756 1.14010 1.20428 0.93624 0.97674 0.94361 1.20992 0.98585 0.95198 0.99255 1.21387 0.96355 0.97450 0.99003 1.21344 1.00749 0.99911 0.93706 1.21347 0.98591 0.94190 0.99856 1.21285 0.98304 1.00064 0.97526 1.17892 0.90173 0.83624 0.80020 1.91045 1.70560 1.31930 1.53964 0.91234 0.84158 0.92185 0.76637 0.78704 0.81535 0.74099 0.89211 0.86716 0.93412 0.87682 0.84298 0.83386 0.83976 0.87096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.26 10.36 127.77 1.32 2.58 16 2 N -0.50 -13.23 2.99 -673.70 -2.01 -15.24 16 3 C 0.13 1.78 10.28 83.37 0.86 2.63 16 4 C -0.22 -2.76 10.00 22.06 0.22 -2.54 16 5 C -0.01 -0.20 10.01 22.41 0.22 0.03 16 6 C -0.03 -0.90 5.78 38.20 0.22 -0.68 16 7 N -0.66 -22.84 5.18 -303.04 -1.57 -24.41 16 8 C 0.51 23.10 7.09 87.66 0.62 23.72 16 9 O -0.54 -31.44 13.51 14.58 0.20 -31.24 16 10 C -0.11 -4.42 4.89 29.85 0.15 -4.27 16 11 C 0.06 2.84 1.21 -12.29 -0.01 2.82 16 12 H 0.04 1.87 4.67 -2.39 -0.01 1.86 16 13 C -0.46 -28.97 7.13 25.60 0.18 -28.78 16 14 H 0.02 1.54 8.06 -2.91 -0.02 1.51 16 15 C 0.02 1.00 5.47 84.66 0.46 1.46 16 16 N -0.96 -67.74 13.96 21.45 0.30 -67.44 16 17 Si 0.93 51.70 27.35 68.60 1.88 53.58 16 18 H -0.30 -17.41 7.11 99.48 0.71 -16.70 16 19 H -0.29 -15.77 7.11 99.48 0.71 -15.07 16 20 H -0.22 -10.61 4.32 99.48 0.43 -10.18 16 21 C -0.06 -2.63 4.75 -19.87 -0.09 -2.73 16 22 C -0.12 -4.92 8.87 22.27 0.20 -4.72 16 23 C -0.12 -4.04 10.05 22.27 0.22 -3.82 16 24 C -0.14 -4.07 10.05 22.27 0.22 -3.84 16 25 C -0.12 -3.86 10.05 22.27 0.22 -3.63 16 26 C -0.15 -6.00 9.16 22.27 0.20 -5.79 16 27 C 0.48 19.01 6.93 84.98 0.59 19.60 16 28 O -0.59 -31.74 14.86 12.16 0.18 -31.56 16 29 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.14 1.32 8.01 -2.38 -0.02 1.30 16 31 H 0.06 1.73 7.39 -2.39 -0.02 1.72 16 32 H 0.22 0.43 8.04 -2.91 -0.02 0.41 16 33 H 0.20 0.57 8.06 -2.91 -0.02 0.55 16 34 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 35 H 0.42 10.54 8.83 -92.71 -0.82 9.72 16 36 H 0.09 3.54 7.66 -2.39 -0.02 3.52 16 37 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 38 H 0.26 17.27 8.31 -92.70 -0.77 16.50 16 39 H 0.11 4.40 7.69 -2.91 -0.02 4.37 16 40 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 41 H 0.15 3.17 8.06 -2.91 -0.02 3.15 16 42 H 0.14 3.51 8.06 -2.91 -0.02 3.48 16 43 H 0.11 4.29 6.54 -2.91 -0.02 4.27 16 Total: -1.00 -107.72 360.20 4.72 -102.99 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.06 Total: 21.30 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 5.81 Total: -7.97 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -3.29 Total: -107.10 kcal Atomic # 8 Polarization: -63.18 SS G_CDS: 0.38 Total: -62.80 kcal Atomic # 14 Polarization: 51.70 SS G_CDS: 1.88 Total: 53.58 kcal Total: -107.72 4.72 -102.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356006837.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.618 kcal (2) G-P(sol) polarization free energy of solvation -107.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -102.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds