Wall clock time and date at job start Tue Mar 31 2020 14:18:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99807 * 2 1 4 4 C 1.50702 * 109.47323 * 90.00098 * 3 2 1 5 5 H 1.08002 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00196 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99811 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 119.99862 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47680 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47248 * 120.00142 * 8 6 4 11 11 H 1.48502 * 109.47209 * 239.99784 * 8 6 4 12 12 C 1.34780 * 119.99918 * 180.02562 * 2 1 3 13 13 O 1.21507 * 119.99536 * 187.04949 * 12 2 1 14 14 C 1.48155 * 120.00142 * 7.04541 * 12 2 1 15 15 C 1.39969 * 120.89188 * 19.40696 * 14 12 2 16 16 C 1.37980 * 119.13546 * 179.74678 * 15 14 12 17 17 N 1.31910 * 120.97159 * 0.53856 * 16 15 14 18 18 C 1.32171 * 121.97669 * 359.71676 * 17 16 15 19 19 O 1.35684 * 119.62581 * 180.02562 * 18 17 16 20 20 C 1.42892 * 116.99816 * 0.02562 * 19 18 17 21 21 C 1.50700 * 109.47067 * 180.02562 * 20 19 18 22 22 C 1.38238 * 120.00281 * 269.72809 * 21 20 19 23 23 C 1.38232 * 120.00059 * 179.76412 * 22 21 20 24 24 C 1.38244 * 120.00093 * 0.51115 * 23 22 21 25 25 C 1.38238 * 119.99643 * 359.74197 * 24 23 22 26 26 C 1.38229 * 120.00212 * 0.02562 * 25 24 23 27 27 C 1.38892 * 120.75032 * 0.02562 * 18 17 16 28 28 H 1.09000 * 109.47256 * 84.71774 * 1 2 3 29 29 H 1.09000 * 109.47127 * 204.71066 * 1 2 3 30 30 H 1.08998 * 109.47401 * 324.71126 * 1 2 3 31 31 H 1.08999 * 109.47074 * 329.99644 * 3 2 1 32 32 H 1.09000 * 109.47014 * 209.99896 * 3 2 1 33 33 H 0.97007 * 119.99867 * 180.02562 * 7 6 4 34 34 H 1.07999 * 120.43417 * 0.02562 * 15 14 12 35 35 H 1.07998 * 119.51486 * 180.27124 * 16 15 14 36 36 H 1.08996 * 109.47758 * 300.00124 * 20 19 18 37 37 H 1.09002 * 109.47144 * 60.00682 * 20 19 18 38 38 H 1.08000 * 119.99988 * 0.02562 * 22 21 20 39 39 H 1.07998 * 120.00362 * 180.23401 * 23 22 21 40 40 H 1.07997 * 120.00137 * 179.72601 * 24 23 22 41 41 H 1.08002 * 119.99910 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.00540 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.53000 * 179.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1269 2.8775 1.6728 7 7 3.5541 3.6176 0.6731 8 14 3.4375 3.4170 3.4338 9 1 2.8586 2.4177 4.3673 10 1 4.9000 3.5247 3.6679 11 1 2.8005 4.7382 3.6665 12 6 2.1389 -1.1672 -0.0005 13 8 3.3471 -1.1712 0.1286 14 6 1.4065 -2.4454 -0.1585 15 6 0.1163 -2.4721 -0.7004 16 6 -0.5305 -3.6834 -0.8359 17 7 0.0453 -4.8069 -0.4534 18 6 1.2596 -4.8289 0.0680 19 8 1.8064 -6.0121 0.4447 20 6 1.0142 -7.1849 0.2476 21 6 1.7794 -8.3935 0.7215 22 6 2.5943 -9.0837 -0.1563 23 6 3.3000 -10.1895 0.2797 24 6 3.1826 -10.6114 1.5910 25 6 2.3637 -9.9243 2.4674 26 6 1.6617 -8.8158 2.0327 27 6 1.9823 -3.6546 0.2346 28 1 -0.3634 0.0946 -1.0233 29 1 -0.3633 -0.9336 0.4296 30 1 -0.3634 0.8388 0.5937 31 1 1.6084 2.0283 -0.5139 32 1 3.1499 1.1384 -0.5138 33 1 4.0316 4.4432 0.8504 34 1 -0.3650 -1.5571 -1.0126 35 1 -1.5244 -3.7116 -1.2574 36 1 0.0874 -7.0969 0.8144 37 1 0.7831 -7.2933 -0.8121 38 1 2.6829 -8.7565 -1.1817 39 1 3.9396 -10.7264 -0.4051 40 1 3.7306 -11.4779 1.9305 41 1 2.2717 -10.2542 3.4917 42 1 1.0216 -8.2792 2.7173 43 1 2.9741 -3.6766 0.6614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356434930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:04 Heat of formation + Delta-G solvation = 17.772118 kcal Electronic energy + Delta-G solvation = -25845.200300 eV Core-core repulsion = 22050.022142 eV Total energy + Delta-G solvation = -3795.178158 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.87390 -39.70146 -38.92283 -37.54188 -35.13832 -33.05483 -32.59855 -32.16029 -31.22511 -30.40860 -27.88304 -26.93299 -26.18757 -24.42263 -23.16484 -22.90823 -22.49204 -21.50196 -19.69261 -17.94139 -17.50005 -16.83061 -16.61467 -16.35115 -16.11473 -15.76282 -15.31652 -15.12177 -14.96257 -14.60773 -14.35265 -13.94490 -13.90151 -13.73694 -13.29633 -13.19128 -12.90579 -12.65502 -12.57107 -12.27971 -12.21199 -11.53318 -11.40787 -11.30878 -11.15100 -11.01052 -10.89177 -10.63621 -10.20083 -9.93122 -9.81872 -9.62776 -9.23596 -9.22574 -9.04684 -8.51496 -8.47101 -7.77989 -6.08161 -4.12767 0.87811 0.88998 1.08883 1.13698 2.85081 3.28505 3.29667 3.36638 3.41050 3.56806 3.77762 3.98966 4.22624 4.41906 4.46410 4.50582 4.68887 4.73016 4.80527 4.96441 4.96994 5.07368 5.13648 5.19859 5.26807 5.29742 5.33747 5.56308 5.63335 5.70452 5.71702 5.73296 5.79229 6.11365 6.12690 6.16030 6.18073 6.25928 6.28950 6.64944 6.95375 7.15963 7.33060 7.41714 7.74582 7.87649 8.16723 8.23441 8.78829 8.94894 9.52299 11.00095 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002296 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.048494 B =12193.539165 C =13098.106823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.589 5.589 3 C 0.245 3.755 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.542 3.458 13 O -0.523 6.523 14 C -0.039 4.039 15 C -0.203 4.203 16 C 0.129 3.871 17 N -0.535 5.535 18 C 0.314 3.686 19 O -0.299 6.299 20 C 0.114 3.886 21 C -0.096 4.096 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.095 4.095 27 C -0.135 4.135 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.263 0.737 34 H 0.166 0.834 35 H 0.163 0.837 36 H 0.075 0.925 37 H 0.075 0.925 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.462 -24.597 -2.409 26.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.320 5.320 3 C 0.127 3.873 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.328 3.672 13 O -0.399 6.399 14 C -0.050 4.050 15 C -0.223 4.223 16 C -0.026 4.026 17 N -0.260 5.260 18 C 0.136 3.864 19 O -0.206 6.206 20 C 0.039 3.961 21 C -0.096 4.096 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.130 4.130 25 C -0.142 4.142 26 C -0.113 4.113 27 C -0.157 4.157 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.094 0.906 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.073 0.927 34 H 0.183 0.817 35 H 0.180 0.820 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.142 0.858 42 H 0.142 0.858 43 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.898 -25.225 -2.355 26.852 hybrid contribution 0.399 1.093 0.988 1.526 sum -8.499 -24.133 -1.367 25.622 Atomic orbital electron populations 1.22321 0.81569 1.03302 1.00584 1.48062 1.06293 1.07495 1.70192 1.19385 0.92483 0.77593 0.97873 1.21438 1.36597 1.06281 0.92161 0.92296 1.24939 0.95287 0.96352 0.97568 1.69938 1.38332 1.14378 1.30705 0.86418 0.78137 0.78278 0.84454 1.19776 1.20814 1.20943 1.18031 0.87184 0.83024 0.78983 1.90775 1.13734 1.86555 1.48881 1.20495 0.94113 0.94350 0.96053 1.23168 0.95286 1.01238 1.02609 1.22353 0.99263 0.86286 0.94703 1.67131 1.10654 1.32565 1.15604 1.19586 0.88729 0.85871 0.92256 1.86327 1.43064 1.12507 1.78722 1.21360 0.92710 0.80345 1.01660 1.19621 0.99490 0.96037 0.94497 1.21120 0.95239 0.95165 0.99781 1.21170 0.99734 0.97103 0.96218 1.21239 0.98306 0.99716 0.93777 1.21171 0.97289 0.95889 0.99874 1.21124 0.98966 0.96375 0.94837 1.21147 1.02250 0.88849 1.03439 0.92806 0.90654 0.90648 0.94503 0.93727 0.92703 0.81709 0.81975 0.90685 0.90686 0.85755 0.85764 0.85917 0.85762 0.85751 0.83108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.98 8.67 59.85 0.52 1.50 16 2 N -0.59 -12.33 2.86 -183.97 -0.53 -12.85 16 3 C 0.25 6.31 5.13 -5.19 -0.03 6.28 16 4 C -0.53 -14.83 9.39 -34.44 -0.32 -15.16 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 7 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.54 11.56 7.55 -12.19 -0.09 11.47 16 13 O -0.52 -13.41 16.26 5.36 0.09 -13.32 16 14 C -0.04 -0.65 5.60 -104.68 -0.59 -1.24 16 15 C -0.20 -2.58 7.71 -39.03 -0.30 -2.88 16 16 C 0.13 1.44 11.17 -17.61 -0.20 1.25 16 17 N -0.53 -7.00 9.18 -13.38 -0.12 -7.12 16 18 C 0.31 4.58 7.49 -17.16 -0.13 4.45 16 19 O -0.30 -4.13 10.10 -18.75 -0.19 -4.32 16 20 C 0.11 1.23 5.43 36.01 0.20 1.43 16 21 C -0.10 -0.98 5.51 -104.62 -0.58 -1.55 16 22 C -0.09 -0.88 9.70 -39.58 -0.38 -1.26 16 23 C -0.12 -1.01 10.05 -39.58 -0.40 -1.40 16 24 C -0.11 -0.87 10.05 -39.58 -0.40 -1.27 16 25 C -0.12 -1.01 10.05 -39.58 -0.40 -1.41 16 26 C -0.09 -0.88 9.70 -39.58 -0.38 -1.27 16 27 C -0.14 -2.21 9.61 -38.84 -0.37 -2.58 16 28 H 0.05 0.65 7.16 -51.93 -0.37 0.28 16 29 H 0.08 0.96 5.07 -51.93 -0.26 0.70 16 30 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 31 H 0.04 0.94 8.07 -51.93 -0.42 0.52 16 32 H 0.04 1.29 7.53 -51.93 -0.39 0.90 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.97 16 34 H 0.17 1.76 4.15 -52.49 -0.22 1.55 16 35 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 36 H 0.07 0.76 8.04 -51.93 -0.42 0.34 16 37 H 0.07 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 41 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 42 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 43 H 0.15 2.57 7.86 -52.48 -0.41 2.15 16 LS Contribution 369.30 15.07 5.57 5.57 Total: -1.00 -34.35 369.30 -8.83 -43.18 By element: Atomic # 1 Polarization: 5.07 SS G_CDS: -5.41 Total: -0.34 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -3.95 Total: -2.01 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.09 Total: -45.59 kcal Atomic # 8 Polarization: -17.54 SS G_CDS: -0.10 Total: -17.64 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.35 -8.83 -43.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356434930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.953 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds