Wall clock time and date at job start Tue Mar 31 2020 14:18:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46496 * 119.99807 * 2 1 4 4 C 1.50702 * 109.47323 * 90.00098 * 3 2 1 5 5 H 1.08002 * 119.99631 * 359.97438 * 4 3 2 6 6 C 1.37878 * 120.00196 * 179.97438 * 4 3 2 7 7 N 1.31514 * 119.99811 * 0.02562 * 6 4 3 8 8 Si 1.86790 * 119.99862 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47680 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47248 * 120.00142 * 8 6 4 11 11 H 1.48502 * 109.47209 * 239.99784 * 8 6 4 12 12 C 1.34780 * 119.99918 * 180.02562 * 2 1 3 13 13 O 1.21507 * 119.99536 * 187.04949 * 12 2 1 14 14 C 1.48155 * 120.00142 * 7.04541 * 12 2 1 15 15 C 1.39969 * 120.89188 * 19.40696 * 14 12 2 16 16 C 1.37980 * 119.13546 * 179.74678 * 15 14 12 17 17 N 1.31910 * 120.97159 * 0.53856 * 16 15 14 18 18 C 1.32171 * 121.97669 * 359.71676 * 17 16 15 19 19 O 1.35684 * 119.62581 * 180.02562 * 18 17 16 20 20 C 1.42892 * 116.99816 * 0.02562 * 19 18 17 21 21 C 1.50700 * 109.47067 * 180.02562 * 20 19 18 22 22 C 1.38238 * 120.00281 * 269.72809 * 21 20 19 23 23 C 1.38232 * 120.00059 * 179.76412 * 22 21 20 24 24 C 1.38244 * 120.00093 * 0.51115 * 23 22 21 25 25 C 1.38238 * 119.99643 * 359.74197 * 24 23 22 26 26 C 1.38229 * 120.00212 * 0.02562 * 25 24 23 27 27 C 1.38892 * 120.75032 * 0.02562 * 18 17 16 28 28 H 1.09000 * 109.47256 * 84.71774 * 1 2 3 29 29 H 1.09000 * 109.47127 * 204.71066 * 1 2 3 30 30 H 1.08998 * 109.47401 * 324.71126 * 1 2 3 31 31 H 1.08999 * 109.47074 * 329.99644 * 3 2 1 32 32 H 1.09000 * 109.47014 * 209.99896 * 3 2 1 33 33 H 0.97007 * 119.99867 * 180.02562 * 7 6 4 34 34 H 1.07999 * 120.43417 * 0.02562 * 15 14 12 35 35 H 1.07998 * 119.51486 * 180.27124 * 16 15 14 36 36 H 1.08996 * 109.47758 * 300.00124 * 20 19 18 37 37 H 1.09002 * 109.47144 * 60.00682 * 20 19 18 38 38 H 1.08000 * 119.99988 * 0.02562 * 22 21 20 39 39 H 1.07998 * 120.00362 * 180.23401 * 23 22 21 40 40 H 1.07997 * 120.00137 * 179.72601 * 24 23 22 41 41 H 1.08002 * 119.99910 * 179.97438 * 25 24 23 42 42 H 1.08002 * 120.00540 * 179.97438 * 26 25 24 43 43 H 1.08005 * 120.53000 * 179.97438 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7038 1.4208 5 1 2.0974 1.0962 2.2417 6 6 3.1269 2.8775 1.6728 7 7 3.5541 3.6176 0.6731 8 14 3.4375 3.4170 3.4338 9 1 2.8586 2.4177 4.3673 10 1 4.9000 3.5247 3.6679 11 1 2.8005 4.7382 3.6665 12 6 2.1389 -1.1672 -0.0005 13 8 3.3471 -1.1712 0.1286 14 6 1.4065 -2.4454 -0.1585 15 6 0.1163 -2.4721 -0.7004 16 6 -0.5305 -3.6834 -0.8359 17 7 0.0453 -4.8069 -0.4534 18 6 1.2596 -4.8289 0.0680 19 8 1.8064 -6.0121 0.4447 20 6 1.0142 -7.1849 0.2476 21 6 1.7794 -8.3935 0.7215 22 6 2.5943 -9.0837 -0.1563 23 6 3.3000 -10.1895 0.2797 24 6 3.1826 -10.6114 1.5910 25 6 2.3637 -9.9243 2.4674 26 6 1.6617 -8.8158 2.0327 27 6 1.9823 -3.6546 0.2346 28 1 -0.3634 0.0946 -1.0233 29 1 -0.3633 -0.9336 0.4296 30 1 -0.3634 0.8388 0.5937 31 1 1.6084 2.0283 -0.5139 32 1 3.1499 1.1384 -0.5138 33 1 4.0316 4.4432 0.8504 34 1 -0.3650 -1.5571 -1.0126 35 1 -1.5244 -3.7116 -1.2574 36 1 0.0874 -7.0969 0.8144 37 1 0.7831 -7.2933 -0.8121 38 1 2.6829 -8.7565 -1.1817 39 1 3.9396 -10.7264 -0.4051 40 1 3.7306 -11.4779 1.9305 41 1 2.2717 -10.2542 3.4917 42 1 1.0216 -8.2792 2.7173 43 1 2.9741 -3.6766 0.6614 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356434930.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:03 Heat of formation + Delta-G solvation = -4.587960 kcal Electronic energy + Delta-G solvation = -25846.169906 eV Core-core repulsion = 22050.022142 eV Total energy + Delta-G solvation = -3796.147763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.03050 -40.75617 -40.03675 -38.63666 -36.86945 -34.94771 -33.62635 -33.35334 -31.85223 -31.50975 -29.71616 -28.06905 -27.33862 -26.03449 -24.30691 -24.03576 -23.54275 -22.29360 -21.06315 -19.26916 -18.74326 -18.47657 -17.72736 -17.37187 -17.27993 -17.00252 -16.82636 -16.26337 -16.12845 -15.91892 -15.70703 -15.18004 -14.83249 -14.55593 -14.49501 -14.33342 -14.08052 -13.95966 -13.85020 -13.61422 -13.37411 -13.26169 -12.90599 -12.63886 -12.41012 -12.27086 -12.12894 -11.99658 -11.83191 -11.72382 -11.28683 -11.01036 -10.66698 -10.57129 -9.87884 -9.83695 -9.59356 -9.50726 -8.25340 -6.39274 -0.35471 0.07827 0.20537 0.44738 1.35055 1.37813 1.49262 1.76964 1.92057 2.25128 2.39940 2.74946 2.89538 3.04776 3.25735 3.44065 3.70262 3.84076 3.89489 3.95141 4.07171 4.12240 4.25111 4.26215 4.35337 4.44321 4.57498 4.61065 4.62082 4.70185 4.70430 4.91017 4.96078 5.00112 5.07266 5.10061 5.17667 5.29067 5.49037 5.50396 5.56011 5.58311 5.76062 6.01648 6.03172 6.15341 6.56528 6.68939 6.70201 7.16063 7.33409 8.82102 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.017750 B = 0.002296 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.048494 B =12193.539165 C =13098.106823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 N -0.594 5.594 3 C 0.259 3.741 4 C -0.543 4.543 5 H 0.050 0.950 6 C 0.009 3.991 7 N -0.926 5.926 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.282 1.282 11 H -0.266 1.266 12 C 0.534 3.466 13 O -0.585 6.585 14 C -0.053 4.053 15 C -0.190 4.190 16 C 0.149 3.851 17 N -0.530 5.530 18 C 0.315 3.685 19 O -0.314 6.314 20 C 0.116 3.884 21 C -0.117 4.117 22 C -0.109 4.109 23 C -0.131 4.131 24 C -0.115 4.115 25 C -0.131 4.131 26 C -0.109 4.109 27 C -0.159 4.159 28 H 0.094 0.906 29 H 0.103 0.897 30 H 0.071 0.929 31 H 0.038 0.962 32 H 0.000 1.000 33 H 0.268 0.732 34 H 0.192 0.808 35 H 0.217 0.783 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.130 0.870 39 H 0.145 0.855 40 H 0.148 0.852 41 H 0.145 0.855 42 H 0.130 0.870 43 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.127 -26.137 -2.169 28.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.323 5.323 3 C 0.138 3.862 4 C -0.581 4.581 5 H 0.068 0.932 6 C -0.191 4.191 7 N -0.565 5.565 8 Si 0.791 3.209 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.191 1.191 12 C 0.323 3.677 13 O -0.466 6.466 14 C -0.064 4.064 15 C -0.209 4.209 16 C -0.006 4.006 17 N -0.254 5.254 18 C 0.137 3.863 19 O -0.222 6.222 20 C 0.042 3.958 21 C -0.117 4.117 22 C -0.128 4.128 23 C -0.148 4.148 24 C -0.133 4.133 25 C -0.149 4.149 26 C -0.128 4.128 27 C -0.181 4.181 28 H 0.112 0.888 29 H 0.121 0.879 30 H 0.089 0.911 31 H 0.056 0.944 32 H 0.018 0.982 33 H 0.077 0.923 34 H 0.209 0.791 35 H 0.233 0.767 36 H 0.099 0.901 37 H 0.099 0.901 38 H 0.148 0.852 39 H 0.163 0.837 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.148 0.852 43 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.615 -26.789 -2.117 29.275 hybrid contribution 1.184 1.473 0.862 2.077 sum -10.430 -25.316 -1.255 27.409 Atomic orbital electron populations 1.22738 0.77616 1.04704 1.03369 1.48047 1.08751 1.05843 1.69693 1.18886 0.91254 0.79809 0.96278 1.21682 1.37006 1.06484 0.92971 0.93182 1.25825 0.94867 0.96416 1.01943 1.70039 1.38806 1.14847 1.32836 0.85380 0.77887 0.78438 0.79175 1.19452 1.20802 1.19084 1.18769 0.86821 0.84553 0.77588 1.90725 1.16582 1.87636 1.51686 1.20082 0.95804 0.91707 0.98831 1.23425 0.93187 1.03207 1.01098 1.23221 1.00523 0.84724 0.92162 1.67307 1.09618 1.33421 1.15079 1.19467 0.89013 0.85551 0.92260 1.86311 1.44164 1.13103 1.78639 1.21503 0.92728 0.79454 1.02147 1.19714 1.00531 0.96187 0.95248 1.21324 0.95512 0.95781 1.00135 1.21487 0.99597 0.96787 0.96973 1.21609 0.97909 1.00210 0.93537 1.21486 0.96879 0.95443 1.01052 1.21325 0.99566 0.97111 0.94752 1.20995 1.01916 0.89988 1.05176 0.88784 0.87879 0.91053 0.94421 0.98212 0.92293 0.79112 0.76681 0.90086 0.90124 0.85223 0.83728 0.83451 0.83744 0.85225 0.85546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.56 8.67 127.77 1.11 2.67 16 2 N -0.59 -25.21 2.86 -854.24 -2.44 -27.65 16 3 C 0.26 13.85 5.13 85.63 0.44 14.29 16 4 C -0.54 -31.52 9.39 25.60 0.24 -31.28 16 5 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 6 C 0.01 0.50 5.46 84.65 0.46 0.97 16 7 N -0.93 -55.72 13.29 21.45 0.28 -55.43 16 8 Si 0.97 45.33 29.54 68.60 2.03 47.35 16 9 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 10 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 11 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 12 C 0.53 23.72 7.55 86.88 0.66 24.38 16 13 O -0.59 -32.31 16.26 -3.74 -0.06 -32.37 16 14 C -0.05 -1.78 5.60 -19.90 -0.11 -1.90 16 15 C -0.19 -4.21 7.71 22.63 0.17 -4.03 16 16 C 0.15 2.67 11.17 84.62 0.94 3.61 16 17 N -0.53 -12.41 9.18 -309.14 -2.84 -15.24 16 18 C 0.31 9.05 7.49 84.80 0.63 9.69 16 19 O -0.31 -8.77 10.10 -90.02 -0.91 -9.68 16 20 C 0.12 2.44 5.43 71.24 0.39 2.83 16 21 C -0.12 -2.34 5.51 -19.86 -0.11 -2.44 16 22 C -0.11 -1.98 9.70 22.27 0.22 -1.76 16 23 C -0.13 -1.95 10.05 22.27 0.22 -1.72 16 24 C -0.11 -1.57 10.05 22.27 0.22 -1.35 16 25 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 26 C -0.11 -1.98 9.70 22.27 0.22 -1.77 16 27 C -0.16 -5.37 9.61 22.75 0.22 -5.15 16 28 H 0.09 1.89 7.16 -2.39 -0.02 1.87 16 29 H 0.10 2.29 5.07 -2.39 -0.01 2.28 16 30 H 0.07 2.07 8.11 -2.39 -0.02 2.05 16 31 H 0.04 1.98 8.07 -2.39 -0.02 1.96 16 32 H 0.00 -0.02 7.53 -2.39 -0.02 -0.03 16 33 H 0.27 15.07 8.31 -92.70 -0.77 14.30 16 34 H 0.19 3.18 4.15 -2.91 -0.01 3.17 16 35 H 0.22 1.64 8.06 -2.91 -0.02 1.62 16 36 H 0.08 1.56 8.04 -2.39 -0.02 1.54 16 37 H 0.08 1.56 8.05 -2.39 -0.02 1.54 16 38 H 0.13 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 40 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 41 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 42 H 0.13 2.07 8.06 -2.91 -0.02 2.05 16 43 H 0.13 4.77 7.86 -2.91 -0.02 4.75 16 Total: -1.00 -79.99 369.30 3.24 -76.75 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: 1.03 Total: 10.97 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 6.15 Total: 5.30 kcal Atomic # 7 Polarization: -93.33 SS G_CDS: -4.99 Total: -98.33 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: -0.97 Total: -42.05 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 2.03 Total: 47.35 kcal Total: -79.99 3.24 -76.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356434930.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.167 kcal (2) G-P(sol) polarization free energy of solvation -79.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds