Wall clock time and date at job start Tue Mar 31 2020 14:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99613 * 2 1 4 4 C 1.50707 * 109.47256 * 269.99874 * 3 2 1 5 5 H 1.07998 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00225 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99836 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00182 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47020 * 89.99848 * 8 6 4 10 10 H 1.48504 * 109.47335 * 209.99922 * 8 6 4 11 11 H 1.48504 * 109.47069 * 330.00097 * 8 6 4 12 12 C 1.34775 * 120.00081 * 180.02562 * 2 1 3 13 13 O 1.21557 * 119.99757 * 184.84865 * 12 2 1 14 14 C 1.47849 * 120.00034 * 4.84463 * 12 2 1 15 15 C 1.39611 * 120.11985 * 320.74316 * 14 12 2 16 16 C 1.37963 * 119.96585 * 180.02562 * 15 14 12 17 17 C 1.38291 * 120.20846 * 359.72226 * 16 15 14 18 18 C 1.38809 * 120.23643 * 0.55393 * 17 16 15 19 19 O 1.35909 * 119.98763 * 179.72038 * 18 17 16 20 20 C 1.42906 * 116.99501 * 359.72898 * 19 18 17 21 21 C 1.50702 * 109.46768 * 180.02562 * 20 19 18 22 22 C 1.38663 * 120.41749 * 270.24810 * 21 20 19 23 23 C 1.38637 * 118.42086 * 180.24673 * 22 21 20 24 24 C 1.38228 * 119.15816 * 359.74936 * 23 22 21 25 25 N 1.31851 * 120.76206 * 0.02562 * 24 23 22 26 26 C 1.31884 * 121.72956 * 359.97438 * 25 24 23 27 27 C 1.38501 * 120.03197 * 359.45045 * 18 17 16 28 28 H 1.09007 * 109.47121 * 265.67272 * 1 2 3 29 29 H 1.09001 * 109.47723 * 25.67307 * 1 2 3 30 30 H 1.09002 * 109.47165 * 145.67544 * 1 2 3 31 31 H 1.08999 * 109.47774 * 30.00508 * 3 2 1 32 32 H 1.09003 * 109.46751 * 150.00463 * 3 2 1 33 33 H 0.97001 * 119.99688 * 179.97438 * 7 6 4 34 34 H 1.07993 * 120.01476 * 0.02562 * 15 14 12 35 35 H 1.07997 * 119.89367 * 180.02562 * 16 15 14 36 36 H 1.07995 * 119.88490 * 180.29569 * 17 16 15 37 37 H 1.08995 * 109.47332 * 59.99914 * 20 19 18 38 38 H 1.09005 * 109.46594 * 299.99744 * 20 19 18 39 39 H 1.07998 * 120.79258 * 359.97256 * 22 21 20 40 40 H 1.08002 * 120.41835 * 179.73549 * 23 22 21 41 41 H 1.07995 * 119.61473 * 180.02562 * 24 23 22 42 42 H 1.08002 * 119.61671 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.10551 * 180.25375 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5540 3.6177 -0.6731 8 14 3.4374 3.4172 -3.4339 9 1 2.3076 4.2607 -3.8998 10 1 4.6981 4.1995 -3.4969 11 1 3.5537 2.2202 -4.3052 12 6 2.1389 -1.1672 -0.0005 13 8 3.3512 -1.1690 0.0885 14 6 1.4036 -2.4453 -0.1092 15 6 0.1910 -2.6151 0.5614 16 6 -0.4922 -3.8093 0.4582 17 6 0.0174 -4.8381 -0.3127 18 6 1.2252 -4.6805 -0.9785 19 8 1.7241 -5.6969 -1.7302 20 6 0.9558 -6.9006 -1.7854 21 6 1.6607 -7.9068 -2.6582 22 6 1.4068 -7.9543 -4.0206 23 6 2.0745 -8.8998 -4.7836 24 6 2.9686 -9.7542 -4.1662 25 7 3.1886 -9.6772 -2.8685 26 6 2.5716 -8.7906 -2.1118 27 6 1.9193 -3.4859 -0.8818 28 1 -0.3634 -0.0775 1.0248 29 1 -0.3634 0.9262 -0.4452 30 1 -0.3633 -0.8487 -0.5795 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5138 33 1 4.0314 4.4433 -0.8504 34 1 -0.2120 -1.8122 1.1607 35 1 -1.4304 -3.9393 0.9771 36 1 -0.5241 -5.7689 -0.3937 37 1 -0.0284 -6.6848 -2.2010 38 1 0.8446 -7.3070 -0.7800 39 1 0.7023 -7.2739 -4.4758 40 1 1.8980 -8.9681 -5.8470 41 1 3.4931 -10.4933 -4.7536 42 1 2.7773 -8.7579 -1.0520 43 1 2.8571 -3.3606 -1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356458434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:36 Heat of formation + Delta-G solvation = 4.116619 kcal Electronic energy + Delta-G solvation = -25896.963078 eV Core-core repulsion = 22101.192774 eV Total energy + Delta-G solvation = -3795.770305 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.79660 -40.18364 -39.00557 -37.01878 -34.93143 -33.50401 -32.66759 -32.23471 -31.11196 -30.09396 -27.66577 -27.20515 -26.02139 -24.05379 -23.99944 -22.75810 -22.38200 -21.66813 -19.42732 -17.75094 -17.57171 -17.02436 -16.54619 -16.49543 -16.36187 -15.76439 -15.49983 -15.33356 -14.94600 -14.42555 -14.30836 -14.20044 -13.79213 -13.70922 -13.48737 -13.15180 -12.89302 -12.67509 -12.48767 -12.18446 -12.09212 -11.97025 -11.39473 -11.26767 -11.14783 -10.98407 -10.88433 -10.56538 -10.27056 -10.17100 -9.86945 -9.65559 -9.52815 -9.13111 -8.89326 -8.44360 -8.25823 -7.68380 -6.05226 -4.10285 0.56212 0.84935 1.04063 1.40069 2.88401 3.29225 3.30403 3.37000 3.41962 3.52906 3.81436 4.01812 4.07841 4.29871 4.31004 4.44358 4.51684 4.53705 4.68126 4.78723 4.86663 4.90088 5.03565 5.16229 5.21908 5.29141 5.32966 5.41205 5.52333 5.66149 5.69514 5.77901 5.86036 5.94050 6.16580 6.20476 6.23847 6.31991 6.46445 6.58103 7.04375 7.26191 7.42330 7.50254 7.53988 7.91061 8.21229 8.34267 8.86316 9.02317 9.54833 11.02847 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.002483 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.095306 B =11273.355946 C =12506.894688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.593 5.593 3 C 0.244 3.756 4 C -0.528 4.528 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.545 3.455 13 O -0.533 6.533 14 C -0.073 4.073 15 C -0.133 4.133 16 C -0.089 4.089 17 C -0.198 4.198 18 C 0.120 3.880 19 O -0.308 6.308 20 C 0.106 3.894 21 C -0.147 4.147 22 C -0.050 4.050 23 C -0.176 4.176 24 C 0.106 3.894 25 N -0.487 5.487 26 C 0.125 3.875 27 C -0.099 4.099 28 H 0.047 0.953 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.035 0.965 32 H 0.047 0.953 33 H 0.264 0.736 34 H 0.138 0.862 35 H 0.128 0.872 36 H 0.127 0.873 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.139 0.861 41 H 0.158 0.842 42 H 0.158 0.842 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.839 -24.405 -2.810 27.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.324 5.324 3 C 0.125 3.875 4 C -0.567 4.567 5 H 0.076 0.924 6 C -0.141 4.141 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.210 1.210 11 H -0.199 1.199 12 C 0.332 3.668 13 O -0.410 6.410 14 C -0.076 4.076 15 C -0.151 4.151 16 C -0.107 4.107 17 C -0.217 4.217 18 C 0.075 3.925 19 O -0.222 6.222 20 C 0.031 3.969 21 C -0.149 4.149 22 C -0.076 4.076 23 C -0.196 4.196 24 C -0.051 4.051 25 N -0.195 5.195 26 C -0.032 4.032 27 C -0.118 4.118 28 H 0.066 0.934 29 H 0.094 0.906 30 H 0.083 0.917 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.156 0.844 35 H 0.146 0.854 36 H 0.145 0.855 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.175 0.825 42 H 0.175 0.825 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -10.315 -24.777 -2.447 26.949 hybrid contribution -0.721 0.933 -1.380 1.815 sum -11.036 -23.844 -3.827 26.551 Atomic orbital electron populations 1.21984 0.81456 1.03195 1.00012 1.48068 1.06297 1.07539 1.70460 1.19369 0.92757 0.77709 0.97679 1.21433 1.36668 1.06410 0.92208 0.92398 1.24939 0.95286 0.96358 0.97513 1.69938 1.38276 1.14328 1.30742 0.86482 0.77690 0.78612 0.84573 1.20618 1.21039 1.19853 1.18125 0.87160 0.83303 0.78253 1.90768 1.13448 1.86975 1.49857 1.20031 0.95074 0.94768 0.97774 1.21623 0.94338 0.98392 1.00791 1.20842 0.99641 0.92444 0.97796 1.21284 0.96775 1.01011 1.02644 1.18761 0.92951 0.88102 0.92702 1.86170 1.48258 1.21766 1.66039 1.21443 0.93783 0.82611 0.99102 1.20534 1.00794 0.98597 0.95001 1.21581 0.97169 0.96126 0.92760 1.22194 0.98637 0.97114 1.01635 1.22894 0.94408 0.96920 0.90859 1.67769 1.23753 1.21345 1.06660 1.22762 0.90255 0.89852 1.00363 1.20442 1.00826 0.89865 1.00684 0.93439 0.90643 0.91723 0.94699 0.93512 0.92670 0.84393 0.85369 0.85520 0.90819 0.90652 0.84443 0.84359 0.82479 0.82450 0.84333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 8.88 59.85 0.53 1.77 16 2 N -0.59 -12.88 2.86 -184.07 -0.53 -13.40 16 3 C 0.24 6.44 5.18 -5.19 -0.03 6.41 16 4 C -0.53 -15.11 9.39 -34.44 -0.32 -15.43 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.65 13.29 55.43 0.74 -25.92 16 8 Si 0.90 21.98 29.54 -169.99 -5.02 16.96 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.55 12.02 7.35 -12.33 -0.09 11.93 16 13 O -0.53 -14.05 16.47 5.32 0.09 -13.97 16 14 C -0.07 -1.25 5.23 -104.99 -0.55 -1.80 16 15 C -0.13 -1.76 7.56 -39.17 -0.30 -2.06 16 16 C -0.09 -0.94 10.03 -39.66 -0.40 -1.34 16 17 C -0.20 -2.10 9.03 -39.35 -0.36 -2.45 16 18 C 0.12 1.59 6.68 -39.27 -0.26 1.32 16 19 O -0.31 -3.81 10.12 -19.45 -0.20 -4.01 16 20 C 0.11 0.88 4.89 36.01 0.18 1.05 16 21 C -0.15 -1.28 5.53 -104.48 -0.58 -1.85 16 22 C -0.05 -0.39 9.86 -39.28 -0.39 -0.77 16 23 C -0.18 -1.21 10.11 -39.44 -0.40 -1.61 16 24 C 0.11 0.83 11.18 -17.55 -0.20 0.64 16 25 N -0.49 -4.94 10.36 -13.25 -0.14 -5.07 16 26 C 0.12 1.16 10.86 -17.55 -0.19 0.97 16 27 C -0.10 -1.62 9.57 -39.02 -0.37 -1.99 16 28 H 0.05 0.62 6.90 -51.92 -0.36 0.26 16 29 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 30 H 0.06 0.91 5.81 -51.93 -0.30 0.61 16 31 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 32 H 0.05 1.39 7.36 -51.93 -0.38 1.01 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.14 1.64 5.31 -52.49 -0.28 1.36 16 35 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.13 0.94 6.28 -52.49 -0.33 0.61 16 37 H 0.07 0.48 7.60 -51.93 -0.39 0.09 16 38 H 0.08 0.49 7.62 -51.93 -0.40 0.10 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.16 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.16 1.19 8.06 -52.49 -0.42 0.77 16 43 H 0.14 2.46 8.05 -52.49 -0.42 2.04 16 LS Contribution 368.18 15.07 5.55 5.55 Total: -1.00 -35.82 368.18 -8.68 -44.50 By element: Atomic # 1 Polarization: 4.28 SS G_CDS: -5.36 Total: -1.08 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.82 Total: -3.56 kcal Atomic # 7 Polarization: -44.46 SS G_CDS: 0.07 Total: -44.39 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.11 Total: -17.97 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.82 -8.68 -44.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356458434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.619 kcal (2) G-P(sol) polarization free energy of solvation -35.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.503 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds