Wall clock time and date at job start Tue Mar 31 2020 14:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 119.99613 * 2 1 4 4 C 1.50707 * 109.47256 * 269.99874 * 3 2 1 5 5 H 1.07998 * 119.99801 * 0.02562 * 4 3 2 6 6 C 1.37873 * 120.00225 * 180.02562 * 4 3 2 7 7 N 1.31524 * 119.99836 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00182 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47020 * 89.99848 * 8 6 4 10 10 H 1.48504 * 109.47335 * 209.99922 * 8 6 4 11 11 H 1.48504 * 109.47069 * 330.00097 * 8 6 4 12 12 C 1.34775 * 120.00081 * 180.02562 * 2 1 3 13 13 O 1.21557 * 119.99757 * 184.84865 * 12 2 1 14 14 C 1.47849 * 120.00034 * 4.84463 * 12 2 1 15 15 C 1.39611 * 120.11985 * 320.74316 * 14 12 2 16 16 C 1.37963 * 119.96585 * 180.02562 * 15 14 12 17 17 C 1.38291 * 120.20846 * 359.72226 * 16 15 14 18 18 C 1.38809 * 120.23643 * 0.55393 * 17 16 15 19 19 O 1.35909 * 119.98763 * 179.72038 * 18 17 16 20 20 C 1.42906 * 116.99501 * 359.72898 * 19 18 17 21 21 C 1.50702 * 109.46768 * 180.02562 * 20 19 18 22 22 C 1.38663 * 120.41749 * 270.24810 * 21 20 19 23 23 C 1.38637 * 118.42086 * 180.24673 * 22 21 20 24 24 C 1.38228 * 119.15816 * 359.74936 * 23 22 21 25 25 N 1.31851 * 120.76206 * 0.02562 * 24 23 22 26 26 C 1.31884 * 121.72956 * 359.97438 * 25 24 23 27 27 C 1.38501 * 120.03197 * 359.45045 * 18 17 16 28 28 H 1.09007 * 109.47121 * 265.67272 * 1 2 3 29 29 H 1.09001 * 109.47723 * 25.67307 * 1 2 3 30 30 H 1.09002 * 109.47165 * 145.67544 * 1 2 3 31 31 H 1.08999 * 109.47774 * 30.00508 * 3 2 1 32 32 H 1.09003 * 109.46751 * 150.00463 * 3 2 1 33 33 H 0.97001 * 119.99688 * 179.97438 * 7 6 4 34 34 H 1.07993 * 120.01476 * 0.02562 * 15 14 12 35 35 H 1.07997 * 119.89367 * 180.02562 * 16 15 14 36 36 H 1.07995 * 119.88490 * 180.29569 * 17 16 15 37 37 H 1.08995 * 109.47332 * 59.99914 * 20 19 18 38 38 H 1.09005 * 109.46594 * 299.99744 * 20 19 18 39 39 H 1.07998 * 120.79258 * 359.97256 * 22 21 20 40 40 H 1.08002 * 120.41835 * 179.73549 * 23 22 21 41 41 H 1.07995 * 119.61473 * 180.02562 * 24 23 22 42 42 H 1.08002 * 119.61671 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.10551 * 180.25375 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0974 1.0962 -2.2417 6 6 3.1267 2.8775 -1.6728 7 7 3.5540 3.6177 -0.6731 8 14 3.4374 3.4172 -3.4339 9 1 2.3076 4.2607 -3.8998 10 1 4.6981 4.1995 -3.4969 11 1 3.5537 2.2202 -4.3052 12 6 2.1389 -1.1672 -0.0005 13 8 3.3512 -1.1690 0.0885 14 6 1.4036 -2.4453 -0.1092 15 6 0.1910 -2.6151 0.5614 16 6 -0.4922 -3.8093 0.4582 17 6 0.0174 -4.8381 -0.3127 18 6 1.2252 -4.6805 -0.9785 19 8 1.7241 -5.6969 -1.7302 20 6 0.9558 -6.9006 -1.7854 21 6 1.6607 -7.9068 -2.6582 22 6 1.4068 -7.9543 -4.0206 23 6 2.0745 -8.8998 -4.7836 24 6 2.9686 -9.7542 -4.1662 25 7 3.1886 -9.6772 -2.8685 26 6 2.5716 -8.7906 -2.1118 27 6 1.9193 -3.4859 -0.8818 28 1 -0.3634 -0.0775 1.0248 29 1 -0.3634 0.9262 -0.4452 30 1 -0.3633 -0.8487 -0.5795 31 1 1.6084 2.0284 0.5139 32 1 3.1499 1.1384 0.5138 33 1 4.0314 4.4433 -0.8504 34 1 -0.2120 -1.8122 1.1607 35 1 -1.4304 -3.9393 0.9771 36 1 -0.5241 -5.7689 -0.3937 37 1 -0.0284 -6.6848 -2.2010 38 1 0.8446 -7.3070 -0.7800 39 1 0.7023 -7.2739 -4.4758 40 1 1.8980 -8.9681 -5.8470 41 1 3.4931 -10.4933 -4.7536 42 1 2.7773 -8.7579 -1.0520 43 1 2.8571 -3.3606 -1.4026 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356458434.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:35 Heat of formation + Delta-G solvation = -19.440524 kcal Electronic energy + Delta-G solvation = -25897.984592 eV Core-core repulsion = 22101.192774 eV Total energy + Delta-G solvation = -3796.791819 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.64371 -41.14192 -40.29828 -38.13492 -36.74237 -34.80218 -34.12440 -32.82482 -32.26303 -31.22197 -29.48384 -27.97588 -27.45332 -25.71447 -24.59174 -23.91675 -23.40648 -22.71358 -20.74213 -19.03653 -18.72819 -18.15653 -17.68728 -17.63448 -17.31381 -17.10232 -16.88355 -16.30891 -16.19612 -16.04721 -15.55053 -14.98598 -14.77396 -14.60180 -14.47790 -14.30795 -14.04875 -13.92696 -13.75093 -13.59067 -13.50509 -13.20293 -12.90133 -12.71942 -12.59663 -12.36353 -12.24433 -12.09585 -11.88183 -11.74541 -10.89771 -10.79277 -10.66793 -10.47731 -10.11217 -10.03666 -9.49452 -9.23444 -8.25694 -6.40971 -0.07095 -0.03551 0.27047 0.40847 1.34319 1.37883 1.48101 1.75484 2.10984 2.31544 2.43933 2.79452 2.92285 3.03734 3.44214 3.57698 3.70167 3.79123 3.84513 3.96276 4.02665 4.10731 4.17572 4.21772 4.39605 4.41517 4.45540 4.54306 4.62638 4.66790 4.79529 4.86200 4.92747 4.97385 5.11467 5.16377 5.20768 5.23586 5.35872 5.40728 5.51066 5.67168 5.69556 5.79343 6.01411 6.38614 6.62076 6.68710 6.94332 7.20379 7.35583 8.81611 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014429 B = 0.002483 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1940.095306 B =11273.355946 C =12506.894688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.598 5.598 3 C 0.257 3.743 4 C -0.547 4.547 5 H 0.051 0.949 6 C 0.008 3.992 7 N -0.926 5.926 8 Si 0.969 3.031 9 H -0.260 1.260 10 H -0.279 1.279 11 H -0.275 1.275 12 C 0.536 3.464 13 O -0.598 6.598 14 C -0.097 4.097 15 C -0.130 4.130 16 C -0.070 4.070 17 C -0.177 4.177 18 C 0.122 3.878 19 O -0.331 6.331 20 C 0.101 3.899 21 C -0.158 4.158 22 C -0.059 4.059 23 C -0.174 4.174 24 C 0.093 3.907 25 N -0.519 5.519 26 C 0.106 3.894 27 C -0.131 4.131 28 H 0.084 0.916 29 H 0.070 0.930 30 H 0.089 0.911 31 H 0.033 0.967 32 H -0.001 1.001 33 H 0.269 0.731 34 H 0.154 0.846 35 H 0.178 0.822 36 H 0.171 0.829 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.156 0.844 40 H 0.166 0.834 41 H 0.180 0.820 42 H 0.164 0.836 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.611 -26.328 -3.778 30.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.328 5.328 3 C 0.136 3.864 4 C -0.586 4.586 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.566 5.566 8 Si 0.793 3.207 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.200 1.200 12 C 0.325 3.675 13 O -0.480 6.480 14 C -0.100 4.100 15 C -0.148 4.148 16 C -0.087 4.087 17 C -0.195 4.195 18 C 0.077 3.923 19 O -0.246 6.246 20 C 0.026 3.974 21 C -0.160 4.160 22 C -0.085 4.085 23 C -0.193 4.193 24 C -0.063 4.063 25 N -0.227 5.227 26 C -0.050 4.050 27 C -0.151 4.151 28 H 0.102 0.898 29 H 0.089 0.911 30 H 0.108 0.892 31 H 0.051 0.949 32 H 0.017 0.983 33 H 0.077 0.923 34 H 0.171 0.829 35 H 0.195 0.805 36 H 0.189 0.811 37 H 0.117 0.883 38 H 0.114 0.886 39 H 0.173 0.827 40 H 0.184 0.816 41 H 0.197 0.803 42 H 0.182 0.818 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -14.151 -26.715 -3.411 30.423 hybrid contribution 0.426 1.380 -1.085 1.806 sum -13.725 -25.335 -4.496 29.162 Atomic orbital electron populations 1.22321 0.77660 1.04105 1.02819 1.48073 1.08666 1.05979 1.70097 1.18860 0.91329 0.79917 0.96286 1.21673 1.37274 1.06751 0.92852 0.93108 1.25872 0.94719 0.96313 1.02180 1.70052 1.38685 1.14780 1.33038 0.85393 0.78274 0.78169 0.78842 1.18421 1.20435 1.20045 1.19016 0.86808 0.85021 0.76632 1.90706 1.16469 1.88121 1.52743 1.19589 0.97008 0.92339 1.01055 1.21803 0.92638 1.00373 1.00031 1.21365 1.00444 0.90507 0.96390 1.21785 0.95028 1.02598 1.00132 1.18690 0.93517 0.87123 0.92931 1.86147 1.49745 1.22798 1.65867 1.21766 0.94184 0.80900 1.00516 1.20655 1.01000 0.98646 0.95705 1.21934 0.97480 0.96503 0.92613 1.22526 0.97628 0.96166 1.02984 1.23367 0.94784 0.97657 0.90475 1.67756 1.24764 1.22307 1.07922 1.22979 0.90776 0.90336 1.00920 1.20264 1.00606 0.91984 1.02213 0.89752 0.91077 0.89236 0.94939 0.98265 0.92254 0.82881 0.80466 0.81140 0.88284 0.88569 0.82657 0.81601 0.80328 0.81839 0.87985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.23 8.88 127.77 1.13 3.36 16 2 N -0.60 -27.03 2.86 -854.54 -2.44 -29.48 16 3 C 0.26 14.39 5.18 85.64 0.44 14.84 16 4 C -0.55 -32.58 9.39 25.60 0.24 -32.34 16 5 H 0.05 3.02 7.81 -2.91 -0.02 2.99 16 6 C 0.01 0.50 5.46 84.65 0.46 0.96 16 7 N -0.93 -56.88 13.29 21.45 0.28 -56.60 16 8 Si 0.97 45.83 29.54 68.60 2.03 47.85 16 9 H -0.26 -11.37 7.11 99.48 0.71 -10.67 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 12 C 0.54 25.10 7.35 86.79 0.64 25.74 16 13 O -0.60 -34.54 16.47 -3.90 -0.06 -34.61 16 14 C -0.10 -3.37 5.23 -20.10 -0.11 -3.48 16 15 C -0.13 -3.07 7.56 22.54 0.17 -2.90 16 16 C -0.07 -1.08 10.03 22.22 0.22 -0.86 16 17 C -0.18 -2.87 9.03 22.42 0.20 -2.67 16 18 C 0.12 3.05 6.68 22.47 0.15 3.20 16 19 O -0.33 -7.77 10.12 -92.52 -0.94 -8.70 16 20 C 0.10 1.36 4.89 71.24 0.35 1.71 16 21 C -0.16 -2.49 5.53 -19.78 -0.11 -2.59 16 22 C -0.06 -0.79 9.86 22.47 0.22 -0.57 16 23 C -0.17 -2.04 10.11 22.36 0.23 -1.81 16 24 C 0.09 1.37 11.18 84.69 0.95 2.31 16 25 N -0.52 -10.34 10.36 -195.85 -2.03 -12.37 16 26 C 0.11 1.92 10.86 84.67 0.92 2.84 16 27 C -0.13 -4.48 9.57 22.63 0.22 -4.26 16 28 H 0.08 1.98 6.90 -2.38 -0.02 1.97 16 29 H 0.07 2.25 8.04 -2.39 -0.02 2.23 16 30 H 0.09 2.32 5.81 -2.39 -0.01 2.31 16 31 H 0.03 1.80 8.07 -2.39 -0.02 1.78 16 32 H 0.00 -0.05 7.36 -2.39 -0.02 -0.07 16 33 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.15 3.07 5.31 -2.91 -0.02 3.06 16 35 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.17 1.32 6.28 -2.91 -0.02 1.30 16 37 H 0.10 0.83 7.60 -2.39 -0.02 0.82 16 38 H 0.10 0.88 7.62 -2.38 -0.02 0.87 16 39 H 0.16 1.41 8.06 -2.91 -0.02 1.39 16 40 H 0.17 0.92 8.06 -2.91 -0.02 0.90 16 41 H 0.18 1.57 8.06 -2.91 -0.02 1.55 16 42 H 0.16 2.46 8.06 -2.91 -0.02 2.43 16 43 H 0.10 4.09 8.05 -2.91 -0.02 4.06 16 Total: -1.00 -86.37 368.18 4.20 -82.17 By element: Atomic # 1 Polarization: 7.22 SS G_CDS: 1.03 Total: 8.25 kcal Atomic # 6 Polarization: -2.85 SS G_CDS: 6.33 Total: 3.48 kcal Atomic # 7 Polarization: -94.25 SS G_CDS: -4.19 Total: -98.44 kcal Atomic # 8 Polarization: -42.31 SS G_CDS: -1.00 Total: -43.31 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 2.03 Total: 47.85 kcal Total: -86.37 4.20 -82.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356458434.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.730 kcal (2) G-P(sol) polarization free energy of solvation -86.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds