Wall clock time and date at job start Tue Mar 31 2020 14:42:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35748 * 117.00076 * 2 1 4 4 C 1.39444 * 120.80823 * 0.02562 * 3 2 1 5 5 C 1.37847 * 119.24009 * 179.97438 * 4 3 2 6 6 N 1.32023 * 120.90420 * 0.02562 * 5 4 3 7 7 C 1.32437 * 121.77664 * 359.97438 * 6 5 4 8 8 N 1.39425 * 119.66819 * 180.28080 * 7 6 5 9 9 C 1.34777 * 119.99881 * 354.51958 * 8 7 6 10 10 O 1.21277 * 120.00104 * 5.18903 * 9 8 7 11 11 C 1.50699 * 119.99595 * 185.18787 * 9 8 7 12 12 C 1.53008 * 109.46765 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47073 * 55.00266 * 12 11 9 14 14 C 1.50698 * 109.46791 * 295.00116 * 12 11 9 15 15 H 1.07999 * 120.00580 * 334.79857 * 14 12 11 16 16 C 1.37881 * 119.99657 * 154.80454 * 14 12 11 17 17 N 1.31511 * 119.99868 * 5.00408 * 16 14 12 18 18 Si 1.86800 * 119.99997 * 185.00413 * 16 14 12 19 19 H 1.48498 * 109.47122 * 89.99789 * 18 16 14 20 20 H 1.48497 * 109.47069 * 210.00051 * 18 16 14 21 21 H 1.48504 * 109.47080 * 329.99925 * 18 16 14 22 22 C 1.50700 * 109.46980 * 175.00295 * 12 11 9 23 23 C 1.38237 * 120.00059 * 55.00729 * 22 12 11 24 24 C 1.38237 * 119.99766 * 179.78486 * 23 22 12 25 25 C 1.38230 * 120.00131 * 0.44888 * 24 23 22 26 26 C 1.38239 * 120.00104 * 359.80498 * 25 24 23 27 27 C 1.38232 * 119.99800 * 235.28406 * 22 12 11 28 28 C 1.38804 * 120.66437 * 0.02562 * 7 6 5 29 29 H 1.09006 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47241 * 300.00103 * 1 2 3 31 31 H 1.08999 * 109.47058 * 60.00200 * 1 2 3 32 32 H 1.08003 * 120.37868 * 359.96000 * 4 3 2 33 33 H 1.08001 * 119.55189 * 179.97438 * 5 4 3 34 34 H 0.96999 * 119.99957 * 174.51436 * 8 7 6 35 35 H 1.08995 * 109.47691 * 300.00126 * 11 9 8 36 36 H 1.09001 * 109.46899 * 60.00372 * 11 9 8 37 37 H 0.97000 * 119.99488 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.00118 * 0.02562 * 23 22 12 39 39 H 1.07998 * 119.99664 * 180.27491 * 24 23 22 40 40 H 1.07998 * 119.99983 * 179.82853 * 25 24 23 41 41 H 1.07991 * 120.00003 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00333 * 359.97438 * 27 22 12 43 43 H 1.08004 * 120.48424 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3024 2.3896 0.0005 5 6 1.9616 3.6002 0.0011 6 7 3.2808 3.6540 0.0005 7 6 4.0235 2.5575 0.0000 8 7 5.4135 2.6655 0.0054 9 6 5.9957 3.8765 -0.1003 10 8 5.3134 4.8790 -0.1054 11 6 7.4947 3.9845 -0.2122 12 6 7.8932 5.4580 -0.3183 13 1 7.4797 6.0080 0.5270 14 6 7.3549 6.0326 -1.6033 15 1 7.1570 5.3840 -2.4438 16 6 7.1151 7.3865 -1.7058 17 7 7.4476 8.1898 -0.7190 18 14 6.3180 8.0798 -3.2464 19 1 4.8422 8.0830 -3.0816 20 1 6.7943 9.4688 -3.4680 21 1 6.6839 7.2388 -4.4144 22 6 9.3957 5.5741 -0.3067 23 6 10.1504 4.8708 -1.2268 24 6 11.5284 4.9808 -1.2189 25 6 12.1521 5.7868 -0.2850 26 6 11.3976 6.4860 0.6385 27 6 10.0194 6.3794 0.6278 28 6 3.4320 1.3018 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2229 2.3554 0.0003 33 1 1.3912 4.5173 0.0011 34 1 5.9616 1.8692 0.0854 35 1 7.9577 3.5461 0.6717 36 1 7.8320 3.4516 -1.1013 37 1 7.2793 9.1423 -0.7914 38 1 9.6633 4.2384 -1.9544 39 1 12.1178 4.4348 -1.9406 40 1 13.2288 5.8705 -0.2771 41 1 11.8849 7.1153 1.3683 42 1 9.4300 6.9257 1.3493 43 1 4.0405 0.4095 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356591803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:47 Heat of formation + Delta-G solvation = 3.211680 kcal Electronic energy + Delta-G solvation = -26632.523319 eV Core-core repulsion = 22836.713773 eV Total energy + Delta-G solvation = -3795.809546 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.75166 -39.34135 -38.36675 -37.69023 -34.52397 -33.84149 -31.48587 -31.47078 -30.17130 -29.93584 -28.65410 -27.62289 -25.62860 -23.59499 -23.25352 -22.19763 -21.53870 -20.28101 -19.29130 -18.52679 -17.04376 -16.56089 -16.42734 -16.08668 -16.02517 -15.66971 -15.13216 -14.74715 -14.49784 -14.32909 -14.04847 -13.86348 -13.68953 -13.42043 -13.10711 -12.69328 -12.54903 -12.35634 -11.96925 -11.87852 -11.63157 -11.58595 -11.44826 -10.88341 -10.70473 -10.55413 -10.28622 -10.20164 -10.01167 -9.62679 -9.42618 -9.07472 -8.91235 -8.57076 -8.30405 -8.10586 -7.97771 -7.54851 -5.91322 -3.91308 1.21224 1.47442 2.35285 2.41080 2.81372 3.39843 3.42184 3.43538 3.47206 3.49910 4.10266 4.55156 4.60261 4.73093 4.81835 4.86547 4.89024 5.00051 5.15961 5.17243 5.41944 5.56295 5.61083 5.71177 5.76598 5.79513 5.88790 6.05392 6.08402 6.13893 6.23917 6.31208 6.47884 6.56821 6.76970 6.88453 6.97439 7.08277 7.13157 7.37362 7.46603 7.55081 7.65104 7.89429 7.99814 8.09195 8.36401 8.39472 8.97808 9.06727 9.70609 11.18015 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003208 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.933073 B = 8726.082071 C =10008.378926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.314 6.314 3 C 0.189 3.811 4 C -0.305 4.305 5 C 0.172 3.828 6 N -0.493 5.493 7 C 0.409 3.591 8 N -0.672 5.672 9 C 0.496 3.504 10 O -0.421 6.421 11 C -0.121 4.121 12 C 0.084 3.916 13 H 0.065 0.935 14 C -0.491 4.491 15 H 0.051 0.949 16 C 0.076 3.924 17 N -0.880 5.880 18 Si 0.887 3.113 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.019 4.019 23 C -0.122 4.122 24 C -0.133 4.133 25 C -0.156 4.156 26 C -0.129 4.129 27 C -0.107 4.107 28 C -0.256 4.256 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.134 0.866 33 H 0.159 0.841 34 H 0.411 0.589 35 H 0.070 0.930 36 H 0.081 0.919 37 H 0.259 0.741 38 H 0.111 0.889 39 H 0.104 0.896 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.116 0.884 43 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.869 -15.381 3.251 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.225 6.225 3 C 0.136 3.864 4 C -0.328 4.328 5 C 0.013 3.987 6 N -0.210 5.210 7 C 0.177 3.823 8 N -0.320 5.320 9 C 0.281 3.719 10 O -0.284 6.284 11 C -0.161 4.161 12 C 0.065 3.935 13 H 0.084 0.916 14 C -0.529 4.529 15 H 0.069 0.931 16 C -0.127 4.127 17 N -0.517 5.517 18 Si 0.716 3.284 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.202 1.202 22 C -0.019 4.019 23 C -0.140 4.140 24 C -0.151 4.151 25 C -0.174 4.174 26 C -0.147 4.147 27 C -0.125 4.125 28 C -0.281 4.281 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.152 0.848 33 H 0.176 0.824 34 H 0.247 0.753 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.069 0.931 38 H 0.129 0.871 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.123 0.877 42 H 0.134 0.866 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -6.748 -13.747 3.278 15.661 hybrid contribution -0.836 -0.584 -1.003 1.430 sum -7.584 -14.331 2.275 16.373 Atomic orbital electron populations 1.23090 0.77955 1.03960 1.01743 1.86022 1.21743 1.26651 1.88106 1.18877 0.91640 0.84297 0.91575 1.22039 1.01132 0.93245 1.16362 1.22512 0.89409 0.96893 0.89886 1.67896 1.06314 1.29367 1.17466 1.18317 0.85681 0.88219 0.90052 1.44240 1.02881 1.11831 1.73010 1.21298 0.91632 0.81935 0.77008 1.90865 1.64009 1.34085 1.39401 1.21845 0.89585 1.02981 1.01730 1.17788 0.86843 0.88376 1.00481 0.91645 1.20696 1.42132 0.92585 0.97451 0.93074 1.24804 0.94712 0.97191 0.95977 1.69916 1.46458 1.03790 1.31571 0.86675 0.80096 0.78039 0.83628 1.20578 1.21544 1.20195 1.20627 0.97822 0.92127 0.91350 1.20915 0.92942 1.01017 0.99097 1.20930 0.95006 1.00166 0.98970 1.20778 0.98427 1.00359 0.97884 1.20995 0.94557 0.99960 0.99224 1.21058 0.93437 0.98674 0.99331 1.20578 0.92521 0.97789 1.17206 0.88160 0.92384 0.92366 0.84796 0.82416 0.75306 0.91150 0.90023 0.93134 0.87129 0.87782 0.87920 0.87726 0.86608 0.84325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 9.84 101.05 0.99 1.18 16 2 O -0.31 -3.42 10.51 -18.95 -0.20 -3.62 16 3 C 0.19 2.39 6.73 -38.86 -0.26 2.13 16 4 C -0.30 -3.67 9.11 -39.28 -0.36 -4.03 16 5 C 0.17 2.53 11.17 -17.61 -0.20 2.33 16 6 N -0.49 -9.22 7.89 -12.44 -0.10 -9.32 16 7 C 0.41 6.71 7.42 -154.70 -1.15 5.56 16 8 N -0.67 -10.46 5.39 -11.46 -0.06 -10.53 16 9 C 0.50 9.90 7.54 -10.99 -0.08 9.82 16 10 O -0.42 -10.57 13.25 5.56 0.07 -10.49 16 11 C -0.12 -2.27 4.83 -27.88 -0.13 -2.40 16 12 C 0.08 1.99 1.53 -92.92 -0.14 1.85 16 13 H 0.07 1.78 7.25 -51.93 -0.38 1.40 16 14 C -0.49 -13.23 6.62 -34.44 -0.23 -13.45 16 15 H 0.05 1.39 7.81 -52.49 -0.41 0.98 16 16 C 0.08 2.16 5.45 -17.82 -0.10 2.06 16 17 N -0.88 -25.67 13.01 55.43 0.72 -24.94 16 18 Si 0.89 22.55 29.54 -169.99 -5.02 17.52 16 19 H -0.28 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 22 C -0.02 -0.41 4.77 -104.62 -0.50 -0.91 16 23 C -0.12 -2.43 8.95 -39.58 -0.35 -2.79 16 24 C -0.13 -2.39 10.05 -39.58 -0.40 -2.79 16 25 C -0.16 -2.77 10.05 -39.58 -0.40 -3.16 16 26 C -0.13 -2.44 10.05 -39.58 -0.40 -2.84 16 27 C -0.11 -2.31 9.67 -39.58 -0.38 -2.69 16 28 C -0.26 -3.43 9.90 -39.10 -0.39 -3.81 16 29 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.34 7.71 -51.93 -0.40 -0.06 16 31 H 0.06 0.35 7.71 -51.93 -0.40 -0.05 16 32 H 0.13 1.18 6.46 -52.48 -0.34 0.84 16 33 H 0.16 1.96 8.06 -52.49 -0.42 1.54 16 34 H 0.41 4.53 8.70 -40.82 -0.36 4.18 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.39 7.32 -51.93 -0.38 1.01 16 37 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 38 H 0.11 2.09 7.36 -52.48 -0.39 1.70 16 39 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.10 1.52 8.06 -52.49 -0.42 1.10 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.29 16 42 H 0.12 2.58 7.95 -52.49 -0.42 2.17 16 43 H 0.14 1.50 8.06 -52.48 -0.42 1.07 16 LS Contribution 367.71 15.07 5.54 5.54 Total: -1.00 -34.89 367.71 -9.07 -43.97 By element: Atomic # 1 Polarization: 11.37 SS G_CDS: -5.56 Total: 5.81 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: -4.47 Total: -13.94 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 0.56 Total: -44.79 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -0.13 Total: -14.11 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.89 -9.07 -43.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356591803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.180 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds