Wall clock time and date at job start Tue Mar 31 2020 14:42:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35748 * 117.00076 * 2 1 4 4 C 1.39444 * 120.80823 * 0.02562 * 3 2 1 5 5 C 1.37847 * 119.24009 * 179.97438 * 4 3 2 6 6 N 1.32023 * 120.90420 * 0.02562 * 5 4 3 7 7 C 1.32437 * 121.77664 * 359.97438 * 6 5 4 8 8 N 1.39425 * 119.66819 * 180.28080 * 7 6 5 9 9 C 1.34777 * 119.99881 * 354.51958 * 8 7 6 10 10 O 1.21277 * 120.00104 * 5.18903 * 9 8 7 11 11 C 1.50699 * 119.99595 * 185.18787 * 9 8 7 12 12 C 1.53008 * 109.46765 * 180.02562 * 11 9 8 13 13 H 1.08992 * 109.47073 * 55.00266 * 12 11 9 14 14 C 1.50698 * 109.46791 * 295.00116 * 12 11 9 15 15 H 1.07999 * 120.00580 * 334.79857 * 14 12 11 16 16 C 1.37881 * 119.99657 * 154.80454 * 14 12 11 17 17 N 1.31511 * 119.99868 * 5.00408 * 16 14 12 18 18 Si 1.86800 * 119.99997 * 185.00413 * 16 14 12 19 19 H 1.48498 * 109.47122 * 89.99789 * 18 16 14 20 20 H 1.48497 * 109.47069 * 210.00051 * 18 16 14 21 21 H 1.48504 * 109.47080 * 329.99925 * 18 16 14 22 22 C 1.50700 * 109.46980 * 175.00295 * 12 11 9 23 23 C 1.38237 * 120.00059 * 55.00729 * 22 12 11 24 24 C 1.38237 * 119.99766 * 179.78486 * 23 22 12 25 25 C 1.38230 * 120.00131 * 0.44888 * 24 23 22 26 26 C 1.38239 * 120.00104 * 359.80498 * 25 24 23 27 27 C 1.38232 * 119.99800 * 235.28406 * 22 12 11 28 28 C 1.38804 * 120.66437 * 0.02562 * 7 6 5 29 29 H 1.09006 * 109.47004 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.47241 * 300.00103 * 1 2 3 31 31 H 1.08999 * 109.47058 * 60.00200 * 1 2 3 32 32 H 1.08003 * 120.37868 * 359.96000 * 4 3 2 33 33 H 1.08001 * 119.55189 * 179.97438 * 5 4 3 34 34 H 0.96999 * 119.99957 * 174.51436 * 8 7 6 35 35 H 1.08995 * 109.47691 * 300.00126 * 11 9 8 36 36 H 1.09001 * 109.46899 * 60.00372 * 11 9 8 37 37 H 0.97000 * 119.99488 * 179.97438 * 17 16 14 38 38 H 1.08005 * 120.00118 * 0.02562 * 23 22 12 39 39 H 1.07998 * 119.99664 * 180.27491 * 24 23 22 40 40 H 1.07998 * 119.99983 * 179.82853 * 25 24 23 41 41 H 1.07991 * 120.00003 * 179.97438 * 26 25 24 42 42 H 1.07997 * 120.00333 * 359.97438 * 27 22 12 43 43 H 1.08004 * 120.48424 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2095 0.0000 4 6 1.3024 2.3896 0.0005 5 6 1.9616 3.6002 0.0011 6 7 3.2808 3.6540 0.0005 7 6 4.0235 2.5575 0.0000 8 7 5.4135 2.6655 0.0054 9 6 5.9957 3.8765 -0.1003 10 8 5.3134 4.8790 -0.1054 11 6 7.4947 3.9845 -0.2122 12 6 7.8932 5.4580 -0.3183 13 1 7.4797 6.0080 0.5270 14 6 7.3549 6.0326 -1.6033 15 1 7.1570 5.3840 -2.4438 16 6 7.1151 7.3865 -1.7058 17 7 7.4476 8.1898 -0.7190 18 14 6.3180 8.0798 -3.2464 19 1 4.8422 8.0830 -3.0816 20 1 6.7943 9.4688 -3.4680 21 1 6.6839 7.2388 -4.4144 22 6 9.3957 5.5741 -0.3067 23 6 10.1504 4.8708 -1.2268 24 6 11.5284 4.9808 -1.2189 25 6 12.1521 5.7868 -0.2850 26 6 11.3976 6.4860 0.6385 27 6 10.0194 6.3794 0.6278 28 6 3.4320 1.3018 -0.0005 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2229 2.3554 0.0003 33 1 1.3912 4.5173 0.0011 34 1 5.9616 1.8692 0.0854 35 1 7.9577 3.5461 0.6717 36 1 7.8320 3.4516 -1.1013 37 1 7.2793 9.1423 -0.7914 38 1 9.6633 4.2384 -1.9544 39 1 12.1178 4.4348 -1.9406 40 1 13.2288 5.8705 -0.2771 41 1 11.8849 7.1153 1.3683 42 1 9.4300 6.9257 1.3493 43 1 4.0405 0.4095 -0.0005 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356591803.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:46 Heat of formation + Delta-G solvation = -18.499747 kcal Electronic energy + Delta-G solvation = -26633.464797 eV Core-core repulsion = 22836.713773 eV Total energy + Delta-G solvation = -3796.751024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86767 -40.62522 -39.77935 -38.90137 -36.01084 -35.50759 -33.41686 -32.50602 -31.48104 -31.37102 -30.07944 -28.37191 -27.45021 -24.89612 -24.63504 -23.50832 -23.02403 -21.66918 -20.88123 -19.57915 -18.59430 -18.21798 -17.61454 -17.33515 -16.88489 -16.82265 -16.50470 -16.25354 -16.17600 -15.69482 -15.40285 -15.32228 -14.80021 -14.70966 -14.59712 -14.23386 -13.93824 -13.57001 -13.51924 -13.36830 -13.14732 -12.88223 -12.58126 -12.51002 -12.41319 -12.24126 -11.82412 -11.66305 -11.60273 -11.32724 -11.03403 -10.90543 -10.45246 -9.91686 -9.88531 -9.49001 -9.29092 -9.15243 -8.03131 -6.06015 0.10757 0.42074 0.82874 0.89125 1.34482 1.40477 1.44026 1.81929 1.97334 2.40530 2.46545 2.95022 3.22120 3.37023 3.54263 3.76036 4.03337 4.12615 4.22472 4.27865 4.38759 4.39595 4.40906 4.44065 4.55095 4.58094 4.64090 4.74732 4.76618 4.78782 4.95738 5.01559 5.06952 5.15801 5.25809 5.42213 5.55010 5.64876 5.75213 5.81425 5.88121 5.98986 6.22041 6.24573 6.37707 6.44349 6.50160 6.99780 7.20238 7.56064 7.59730 9.05039 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003208 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.933073 B = 8726.082071 C =10008.378926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.320 6.320 3 C 0.187 3.813 4 C -0.284 4.284 5 C 0.148 3.852 6 N -0.549 5.549 7 C 0.380 3.620 8 N -0.657 5.657 9 C 0.498 3.502 10 O -0.486 6.486 11 C -0.114 4.114 12 C 0.088 3.912 13 H 0.016 0.984 14 C -0.484 4.484 15 H 0.045 0.955 16 C 0.023 3.977 17 N -0.912 5.912 18 Si 0.933 3.067 19 H -0.292 1.292 20 H -0.285 1.285 21 H -0.265 1.265 22 C -0.042 4.042 23 C -0.130 4.130 24 C -0.127 4.127 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.133 4.133 28 C -0.247 4.247 29 H 0.125 0.875 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.169 0.831 33 H 0.168 0.832 34 H 0.432 0.568 35 H 0.101 0.899 36 H 0.105 0.895 37 H 0.253 0.747 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.127 0.873 42 H 0.089 0.911 43 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 -18.496 2.321 19.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.232 6.232 3 C 0.133 3.867 4 C -0.306 4.306 5 C -0.009 4.009 6 N -0.268 5.268 7 C 0.149 3.851 8 N -0.306 5.306 9 C 0.285 3.715 10 O -0.354 6.354 11 C -0.154 4.154 12 C 0.069 3.931 13 H 0.034 0.966 14 C -0.522 4.522 15 H 0.063 0.937 16 C -0.176 4.176 17 N -0.551 5.551 18 Si 0.760 3.240 19 H -0.219 1.219 20 H -0.211 1.211 21 H -0.190 1.190 22 C -0.042 4.042 23 C -0.148 4.148 24 C -0.145 4.145 25 C -0.166 4.166 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.271 4.271 29 H 0.143 0.857 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.272 0.728 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.062 0.938 38 H 0.138 0.862 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.145 0.855 42 H 0.107 0.893 43 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -6.037 -16.943 2.339 18.138 hybrid contribution -1.154 0.205 -0.657 1.344 sum -7.192 -16.738 1.682 18.295 Atomic orbital electron populations 1.23467 0.75604 1.06083 1.02724 1.86032 1.24095 1.25397 1.87634 1.18994 0.91651 0.85209 0.90827 1.22312 1.02781 0.91993 1.13548 1.22786 0.88582 0.98649 0.90875 1.67737 1.08360 1.31589 1.19151 1.18494 0.85577 0.88968 0.92013 1.43814 1.03306 1.11259 1.72257 1.21467 0.91896 0.82371 0.75794 1.90843 1.65263 1.36478 1.42811 1.21731 0.89273 1.00188 1.04171 1.17549 0.88113 0.90595 0.96866 0.96592 1.20984 1.40677 0.92267 0.98270 0.93698 1.25449 0.95958 0.98046 0.98144 1.70049 1.48537 1.03466 1.33066 0.85951 0.78489 0.77851 0.81678 1.21890 1.21090 1.18984 1.20463 0.96815 0.93882 0.93074 1.21057 0.94111 1.01022 0.98633 1.21350 0.94263 0.99610 0.99231 1.21237 1.00328 0.98668 0.96412 1.21267 0.93354 1.00253 1.00133 1.21021 0.94913 0.99437 0.99729 1.20750 0.93446 0.97313 1.15569 0.85657 0.91279 0.91429 0.81321 0.81487 0.72784 0.88106 0.87731 0.93788 0.86196 0.84063 0.84059 0.85485 0.89265 0.81697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.84 113.37 1.12 1.26 16 2 O -0.32 -6.00 10.51 -90.73 -0.95 -6.96 16 3 C 0.19 4.34 6.73 22.74 0.15 4.49 16 4 C -0.28 -6.36 9.11 22.47 0.20 -6.16 16 5 C 0.15 4.44 11.17 84.57 0.94 5.38 16 6 N -0.55 -21.40 7.89 -193.27 -1.52 -22.93 16 7 C 0.38 12.57 7.42 132.83 0.99 13.55 16 8 N -0.66 -20.52 5.39 -308.56 -1.66 -22.18 16 9 C 0.50 20.59 7.54 87.66 0.66 21.25 16 10 O -0.49 -26.00 13.25 -3.02 -0.04 -26.04 16 11 C -0.11 -4.30 4.83 29.85 0.14 -4.16 16 12 C 0.09 4.34 1.53 -12.28 -0.02 4.32 16 13 H 0.02 0.93 7.25 -2.39 -0.02 0.91 16 14 C -0.48 -27.03 6.62 25.60 0.17 -26.86 16 15 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 16 C 0.02 1.35 5.45 84.66 0.46 1.82 16 17 N -0.91 -56.21 13.01 21.45 0.28 -55.93 16 18 Si 0.93 47.85 29.54 68.60 2.03 49.87 16 19 H -0.29 -15.40 7.11 99.48 0.71 -14.70 16 20 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 21 H -0.27 -12.95 7.11 99.48 0.71 -12.24 16 22 C -0.04 -1.88 4.77 -19.87 -0.09 -1.97 16 23 C -0.13 -5.00 8.95 22.27 0.20 -4.80 16 24 C -0.13 -4.11 10.05 22.27 0.22 -3.89 16 25 C -0.15 -4.73 10.05 22.27 0.22 -4.50 16 26 C -0.13 -4.82 10.05 22.27 0.22 -4.60 16 27 C -0.13 -5.90 9.67 22.27 0.22 -5.68 16 28 C -0.25 -6.23 9.90 22.58 0.22 -6.01 16 29 H 0.13 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.55 7.71 -2.39 -0.02 0.54 16 31 H 0.07 0.57 7.71 -2.39 -0.02 0.55 16 32 H 0.17 2.46 6.46 -2.91 -0.02 2.44 16 33 H 0.17 4.33 8.06 -2.91 -0.02 4.31 16 34 H 0.43 9.02 8.70 -92.71 -0.81 8.21 16 35 H 0.10 3.16 8.14 -2.39 -0.02 3.14 16 36 H 0.10 3.46 7.32 -2.39 -0.02 3.44 16 37 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.12 4.29 7.36 -2.91 -0.02 4.27 16 39 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 40 H 0.14 3.43 8.06 -2.91 -0.02 3.41 16 41 H 0.13 3.96 8.06 -2.92 -0.02 3.93 16 42 H 0.09 4.32 7.95 -2.91 -0.02 4.30 16 43 H 0.17 3.13 8.06 -2.91 -0.02 3.11 16 Total: -1.00 -82.06 367.71 4.39 -77.67 By element: Atomic # 1 Polarization: 22.82 SS G_CDS: 0.23 Total: 23.05 kcal Atomic # 6 Polarization: -22.59 SS G_CDS: 6.03 Total: -16.55 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -2.91 Total: -101.04 kcal Atomic # 8 Polarization: -32.01 SS G_CDS: -0.99 Total: -33.00 kcal Atomic # 14 Polarization: 47.85 SS G_CDS: 2.03 Total: 49.87 kcal Total: -82.06 4.39 -77.67 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356591803.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.171 kcal (2) G-P(sol) polarization free energy of solvation -82.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds