Wall clock time and date at job start Tue Mar 31 2020 14:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00251 * 2 1 4 4 N 1.46497 * 109.47483 * 124.99869 * 3 2 1 5 5 C 1.46499 * 119.99908 * 262.84557 * 4 3 2 6 6 C 1.50706 * 109.47190 * 269.99569 * 5 4 3 7 7 H 1.08003 * 119.99618 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00175 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99894 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 120.00087 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47173 * 90.00315 * 10 8 6 12 12 H 1.48502 * 109.47250 * 210.00379 * 10 8 6 13 13 H 1.48498 * 109.47128 * 330.00209 * 10 8 6 14 14 C 1.34773 * 120.00240 * 82.83968 * 4 3 2 15 15 O 1.21545 * 120.00396 * 183.47618 * 14 4 3 16 16 C 1.47928 * 119.99847 * 3.47913 * 14 4 3 17 17 C 1.38260 * 119.24327 * 173.31274 * 16 14 4 18 18 C 1.40696 * 118.65187 * 180.02562 * 17 16 14 19 19 C 1.40236 * 122.05187 * 179.97438 * 18 17 16 20 20 C 1.36319 * 119.47569 * 180.02562 * 19 18 17 21 21 C 1.39245 * 120.94711 * 359.97438 * 20 19 18 22 22 C 1.36363 * 121.05759 * 0.02562 * 21 20 19 23 23 C 1.40037 * 119.59233 * 0.02562 * 22 21 20 24 24 C 1.41355 * 121.85841 * 179.97438 * 23 22 21 25 25 O 1.35492 * 119.94849 * 0.02562 * 24 23 22 26 26 C 1.42901 * 116.99804 * 179.97438 * 25 24 23 27 27 N 1.31383 * 120.09651 * 179.97438 * 24 23 22 28 28 H 1.08000 * 119.99847 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99967 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99946 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47014 * 4.99984 * 3 2 1 32 32 H 1.09003 * 109.47303 * 245.00060 * 3 2 1 33 33 H 1.08998 * 109.47627 * 29.99660 * 5 4 3 34 34 H 1.08998 * 109.47523 * 149.99997 * 5 4 3 35 35 H 0.96992 * 119.99816 * 179.97438 * 9 8 6 36 36 H 1.07995 * 120.67585 * 0.26632 * 17 16 14 37 37 H 1.07995 * 120.26193 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.52426 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.47211 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.20440 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.46798 * 60.00073 * 26 25 24 42 42 H 1.08999 * 109.47082 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47204 * 300.00615 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6142 2.0051 2.3759 6 6 3.0408 3.4493 2.3163 7 1 3.5447 3.8276 1.4391 8 6 2.7888 4.2872 3.3818 9 7 3.1616 5.5474 3.3298 10 14 1.9179 3.6326 4.8991 11 1 2.9231 3.1168 5.8628 12 1 1.1396 4.7266 5.5337 13 1 0.9988 2.5342 4.5070 14 6 4.1987 0.7372 1.0274 15 8 4.9451 0.7045 1.9861 16 6 4.6129 0.1244 -0.2537 17 6 5.9021 -0.3572 -0.3864 18 6 6.2830 -0.9371 -1.6104 19 6 7.5717 -1.4476 -1.8230 20 6 7.8845 -1.9979 -3.0303 21 6 6.9428 -2.0607 -4.0541 22 6 5.6811 -1.5736 -3.8803 23 6 5.3241 -1.0001 -2.6536 24 6 4.0303 -0.4802 -2.4215 25 8 3.0956 -0.5295 -3.4011 26 6 1.8090 0.0136 -3.0982 27 7 3.7325 0.0500 -1.2568 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.5331 1.9506 2.5034 34 1 3.1044 1.5161 3.2177 35 1 2.9840 6.1369 4.0793 36 1 6.6014 -0.2932 0.4341 37 1 8.3108 -1.4042 -1.0368 38 1 8.8769 -2.3908 -3.1950 39 1 7.2162 -2.5022 -5.0011 40 1 4.9617 -1.6291 -4.6840 41 1 1.9108 1.0684 -2.8434 42 1 1.1576 -0.0898 -3.9660 43 1 1.3773 -0.5240 -2.2540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359448590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:32 Heat of formation + Delta-G solvation = 34.210073 kcal Electronic energy + Delta-G solvation = -27798.191903 eV Core-core repulsion = 24003.726548 eV Total energy + Delta-G solvation = -3794.465354 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.30355 -39.15960 -38.77802 -36.66091 -35.80836 -33.23099 -32.58519 -32.10708 -31.51061 -29.70691 -28.23697 -27.45332 -25.56492 -24.57496 -23.78450 -22.28202 -22.11029 -20.16895 -19.44529 -18.23709 -17.62961 -17.53365 -16.89075 -16.29517 -16.13563 -15.72307 -15.37201 -14.88332 -14.79171 -14.42163 -14.07757 -14.00598 -13.86368 -13.67324 -13.35227 -12.90968 -12.79342 -12.35282 -12.27760 -12.17558 -12.00153 -11.62957 -11.50831 -11.35943 -11.29705 -10.98868 -10.88697 -10.50783 -10.17183 -9.93784 -9.88576 -9.49193 -9.29488 -9.16995 -8.75192 -8.57604 -7.98037 -7.63114 -6.07893 -4.06940 0.24952 0.58201 1.76364 2.49071 2.62331 2.82342 3.30732 3.36673 3.38868 3.51326 3.71444 4.11376 4.23817 4.40786 4.45727 4.63215 4.67115 4.76045 5.03141 5.10227 5.14573 5.21378 5.25996 5.28610 5.33424 5.50596 5.56129 5.60912 5.72125 5.73133 5.80747 5.93110 6.16069 6.17791 6.21548 6.29555 6.45400 6.60396 6.70567 6.85911 6.93511 6.96945 7.08004 7.38884 7.60759 7.69804 8.21482 8.46405 8.85685 8.96439 9.52059 11.05374 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.003896 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.105203 B = 7184.402230 C = 8320.938730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C 0.126 3.874 4 N -0.565 5.565 5 C 0.214 3.786 6 C -0.529 4.529 7 H 0.075 0.925 8 C 0.074 3.926 9 N -0.897 5.897 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.285 1.285 13 H -0.265 1.265 14 C 0.560 3.440 15 O -0.533 6.533 16 C 0.112 3.888 17 C -0.130 4.130 18 C -0.002 4.002 19 C -0.110 4.110 20 C -0.093 4.093 21 C -0.130 4.130 22 C -0.070 4.070 23 C -0.104 4.104 24 C 0.352 3.648 25 O -0.302 6.302 26 C 0.027 3.973 27 N -0.515 5.515 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.118 0.882 33 H 0.033 0.967 34 H 0.038 0.962 35 H 0.265 0.735 36 H 0.154 0.846 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.127 0.873 40 H 0.136 0.864 41 H 0.064 0.936 42 H 0.096 0.904 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.867 -16.674 -17.030 23.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.153 4.153 3 C 0.003 3.997 4 N -0.294 5.294 5 C 0.094 3.906 6 C -0.568 4.568 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.535 5.535 10 Si 0.702 3.298 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.345 3.655 15 O -0.410 6.410 16 C -0.013 4.013 17 C -0.152 4.152 18 C -0.007 4.007 19 C -0.128 4.128 20 C -0.113 4.113 21 C -0.148 4.148 22 C -0.089 4.089 23 C -0.107 4.107 24 C 0.159 3.841 25 O -0.207 6.207 26 C -0.067 4.067 27 N -0.244 5.244 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.118 0.882 31 H 0.095 0.905 32 H 0.135 0.865 33 H 0.051 0.949 34 H 0.056 0.944 35 H 0.075 0.925 36 H 0.172 0.828 37 H 0.154 0.846 38 H 0.146 0.854 39 H 0.145 0.855 40 H 0.154 0.846 41 H 0.083 0.917 42 H 0.114 0.886 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.429 -16.207 -16.382 23.089 hybrid contribution 0.071 -0.330 0.797 0.866 sum 1.501 -16.537 -15.585 22.773 Atomic orbital electron populations 1.23775 0.95801 1.01479 1.03475 1.23321 0.95561 0.99343 0.97059 1.21235 0.92726 0.94175 0.91591 1.47748 1.14063 1.51652 1.15887 1.19760 0.95653 0.93283 0.81899 1.21318 1.39029 0.92112 1.04320 0.90691 1.24836 0.95253 0.94683 0.98104 1.69897 1.46977 1.04741 1.31905 0.86862 0.80311 0.78872 0.83767 1.19845 1.21048 1.18976 1.17728 0.82427 0.79371 0.85993 1.90763 1.52461 1.59912 1.37856 1.20865 0.90443 0.97335 0.92629 1.22004 0.96909 0.98805 0.97464 1.17965 0.93770 0.96486 0.92469 1.20998 0.94869 0.98736 0.98230 1.21010 0.99636 0.97600 0.93011 1.20924 0.93497 1.00890 0.99521 1.20955 0.96810 0.95511 0.95666 1.18072 0.91939 1.04387 0.96300 1.20070 0.87076 0.90056 0.86858 1.86142 1.22323 1.76570 1.35681 1.23267 0.80755 0.99801 1.02890 1.67832 1.35938 1.20157 1.00442 0.88448 0.89097 0.88221 0.90513 0.86540 0.94930 0.94367 0.92547 0.82844 0.84552 0.85433 0.85530 0.84617 0.91684 0.88552 0.91020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.65 14.11 29.02 0.41 -2.24 16 2 C -0.13 -1.98 6.14 -36.02 -0.22 -2.20 16 3 C 0.13 2.21 5.39 -5.20 -0.03 2.18 16 4 N -0.57 -12.38 2.46 -177.52 -0.44 -12.81 16 5 C 0.21 5.39 4.22 -5.19 -0.02 5.37 16 6 C -0.53 -15.42 9.94 -34.44 -0.34 -15.76 16 7 H 0.07 2.40 8.06 -52.48 -0.42 1.97 16 8 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 9 N -0.90 -27.81 13.96 55.43 0.77 -27.04 16 10 Si 0.88 21.77 27.47 -169.99 -4.67 17.10 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.27 -6.25 6.54 56.52 0.37 -5.88 16 14 C 0.56 12.24 7.57 -12.29 -0.09 12.15 16 15 O -0.53 -13.30 15.84 5.33 0.08 -13.21 16 16 C 0.11 1.98 6.62 -83.09 -0.55 1.43 16 17 C -0.13 -2.02 9.40 -38.65 -0.36 -2.39 16 18 C 0.00 -0.03 5.74 -106.84 -0.61 -0.64 16 19 C -0.11 -1.13 9.81 -39.52 -0.39 -1.51 16 20 C -0.09 -0.78 9.95 -39.90 -0.40 -1.17 16 21 C -0.13 -1.08 9.95 -39.88 -0.40 -1.47 16 22 C -0.07 -0.70 9.58 -39.58 -0.38 -1.08 16 23 C -0.10 -1.33 5.76 -106.66 -0.61 -1.94 16 24 C 0.35 4.82 7.54 -16.56 -0.12 4.69 16 25 O -0.30 -3.55 9.74 -18.17 -0.18 -3.73 16 26 C 0.03 0.27 9.76 101.05 0.99 1.26 16 27 N -0.51 -8.00 3.55 -9.60 -0.03 -8.04 16 28 H 0.10 1.22 7.84 -52.49 -0.41 0.80 16 29 H 0.09 1.01 8.06 -52.49 -0.42 0.58 16 30 H 0.10 1.52 7.57 -52.48 -0.40 1.13 16 31 H 0.08 1.38 7.67 -51.93 -0.40 0.98 16 32 H 0.12 1.97 3.81 -53.75 -0.20 1.76 16 33 H 0.03 0.79 7.13 -51.93 -0.37 0.42 16 34 H 0.04 1.02 6.80 -51.93 -0.35 0.66 16 35 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 36 H 0.15 2.33 7.61 -52.49 -0.40 1.94 16 37 H 0.14 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 39 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 40 H 0.14 1.14 7.65 -52.48 -0.40 0.74 16 41 H 0.06 0.68 7.06 -51.93 -0.37 0.32 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.74 5.46 -51.93 -0.28 0.46 16 LS Contribution 356.08 15.07 5.37 5.37 Total: -1.00 -34.21 356.08 -7.62 -41.83 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: -5.29 Total: 1.79 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -3.24 Total: -1.27 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.30 Total: -47.89 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.09 Total: -16.94 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.67 Total: 17.10 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.21 -7.62 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359448590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.043 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds