Wall clock time and date at job start Tue Mar 31 2020 14:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50700 * 120.00251 * 2 1 4 4 N 1.46497 * 109.47483 * 124.99869 * 3 2 1 5 5 C 1.46499 * 119.99908 * 262.84557 * 4 3 2 6 6 C 1.50706 * 109.47190 * 269.99569 * 5 4 3 7 7 H 1.08003 * 119.99618 * 359.97438 * 6 5 4 8 8 C 1.37876 * 120.00175 * 180.02562 * 6 5 4 9 9 N 1.31521 * 119.99894 * 179.97438 * 8 6 5 10 10 Si 1.86792 * 120.00087 * 359.97438 * 8 6 5 11 11 H 1.48499 * 109.47173 * 90.00315 * 10 8 6 12 12 H 1.48502 * 109.47250 * 210.00379 * 10 8 6 13 13 H 1.48498 * 109.47128 * 330.00209 * 10 8 6 14 14 C 1.34773 * 120.00240 * 82.83968 * 4 3 2 15 15 O 1.21545 * 120.00396 * 183.47618 * 14 4 3 16 16 C 1.47928 * 119.99847 * 3.47913 * 14 4 3 17 17 C 1.38260 * 119.24327 * 173.31274 * 16 14 4 18 18 C 1.40696 * 118.65187 * 180.02562 * 17 16 14 19 19 C 1.40236 * 122.05187 * 179.97438 * 18 17 16 20 20 C 1.36319 * 119.47569 * 180.02562 * 19 18 17 21 21 C 1.39245 * 120.94711 * 359.97438 * 20 19 18 22 22 C 1.36363 * 121.05759 * 0.02562 * 21 20 19 23 23 C 1.40037 * 119.59233 * 0.02562 * 22 21 20 24 24 C 1.41355 * 121.85841 * 179.97438 * 23 22 21 25 25 O 1.35492 * 119.94849 * 0.02562 * 24 23 22 26 26 C 1.42901 * 116.99804 * 179.97438 * 25 24 23 27 27 N 1.31383 * 120.09651 * 179.97438 * 24 23 22 28 28 H 1.08000 * 119.99847 * 0.02562 * 1 2 3 29 29 H 1.07997 * 119.99967 * 180.02562 * 1 2 3 30 30 H 1.08004 * 119.99946 * 179.97438 * 2 1 3 31 31 H 1.09000 * 109.47014 * 4.99984 * 3 2 1 32 32 H 1.09003 * 109.47303 * 245.00060 * 3 2 1 33 33 H 1.08998 * 109.47627 * 29.99660 * 5 4 3 34 34 H 1.08998 * 109.47523 * 149.99997 * 5 4 3 35 35 H 0.96992 * 119.99816 * 179.97438 * 9 8 6 36 36 H 1.07995 * 120.67585 * 0.26632 * 17 16 14 37 37 H 1.07995 * 120.26193 * 359.97438 * 19 18 17 38 38 H 1.08000 * 119.52426 * 179.97438 * 20 19 18 39 39 H 1.07998 * 119.47211 * 180.02562 * 21 20 19 40 40 H 1.08004 * 120.20440 * 179.97438 * 22 21 20 41 41 H 1.08995 * 109.46798 * 60.00073 * 26 25 24 42 42 H 1.08999 * 109.47082 * 180.02562 * 26 25 24 43 43 H 1.08999 * 109.47204 * 300.00615 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 2.6142 2.0051 2.3759 6 6 3.0408 3.4493 2.3163 7 1 3.5447 3.8276 1.4391 8 6 2.7888 4.2872 3.3818 9 7 3.1616 5.5474 3.3298 10 14 1.9179 3.6326 4.8991 11 1 2.9231 3.1168 5.8628 12 1 1.1396 4.7266 5.5337 13 1 0.9988 2.5342 4.5070 14 6 4.1987 0.7372 1.0274 15 8 4.9451 0.7045 1.9861 16 6 4.6129 0.1244 -0.2537 17 6 5.9021 -0.3572 -0.3864 18 6 6.2830 -0.9371 -1.6104 19 6 7.5717 -1.4476 -1.8230 20 6 7.8845 -1.9979 -3.0303 21 6 6.9428 -2.0607 -4.0541 22 6 5.6811 -1.5736 -3.8803 23 6 5.3241 -1.0001 -2.6536 24 6 4.0303 -0.4802 -2.4215 25 8 3.0956 -0.5295 -3.4011 26 6 1.8090 0.0136 -3.0982 27 7 3.7325 0.0500 -1.2568 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5400 -0.9353 0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 0.0896 32 1 2.6213 1.4026 -0.9314 33 1 1.5331 1.9506 2.5034 34 1 3.1044 1.5161 3.2177 35 1 2.9840 6.1369 4.0793 36 1 6.6014 -0.2932 0.4341 37 1 8.3108 -1.4042 -1.0368 38 1 8.8769 -2.3908 -3.1950 39 1 7.2162 -2.5022 -5.0011 40 1 4.9617 -1.6291 -4.6840 41 1 1.9108 1.0684 -2.8434 42 1 1.1576 -0.0898 -3.9660 43 1 1.3773 -0.5240 -2.2540 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359448590.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:31 Heat of formation + Delta-G solvation = 12.548561 kcal Electronic energy + Delta-G solvation = -27799.131216 eV Core-core repulsion = 24003.726548 eV Total energy + Delta-G solvation = -3795.404668 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.36259 -40.67003 -39.66045 -37.74850 -37.39037 -35.11123 -33.87563 -33.46743 -32.50593 -30.90046 -29.99270 -28.33671 -26.94513 -26.01758 -24.67933 -23.97751 -23.03307 -21.55704 -20.68115 -19.26134 -19.15290 -18.89021 -18.49875 -17.55832 -17.17790 -16.99392 -16.57682 -16.39231 -16.06376 -15.78222 -15.48894 -15.05054 -14.87427 -14.77861 -14.67345 -14.40008 -14.21833 -13.93310 -13.60072 -13.31705 -13.17445 -13.03905 -12.76527 -12.59742 -12.50608 -12.36468 -12.09880 -12.09305 -11.97321 -11.78247 -11.35878 -10.85953 -10.85269 -10.48122 -10.15786 -9.95780 -9.52771 -8.85513 -8.36810 -6.42939 -0.76613 -0.35150 0.82786 1.29873 1.34681 1.35569 1.44462 1.47251 1.88707 2.16520 2.29003 2.36742 2.96300 2.99379 3.01859 3.52813 3.65045 3.76534 3.94698 4.03962 4.14360 4.26040 4.29371 4.37458 4.45856 4.49652 4.60895 4.62631 4.69784 4.73393 4.78111 4.84896 4.94029 5.03111 5.04887 5.16093 5.28336 5.40903 5.42632 5.47035 5.49168 5.74217 5.87017 5.93708 6.06152 6.20091 6.48440 6.57484 6.64812 7.12381 7.26441 8.80215 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.015877 B = 0.003896 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.105203 B = 7184.402230 C = 8320.938730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.148 4.148 3 C 0.128 3.872 4 N -0.575 5.575 5 C 0.226 3.774 6 C -0.539 4.539 7 H 0.026 0.974 8 C 0.015 3.985 9 N -0.942 5.942 10 Si 0.948 3.052 11 H -0.273 1.273 12 H -0.271 1.271 13 H -0.241 1.241 14 C 0.551 3.449 15 O -0.581 6.581 16 C 0.080 3.920 17 C -0.126 4.126 18 C -0.022 4.022 19 C -0.120 4.120 20 C -0.080 4.080 21 C -0.111 4.111 22 C -0.080 4.080 23 C -0.113 4.113 24 C 0.350 3.650 25 O -0.296 6.296 26 C 0.023 3.977 27 N -0.525 5.525 28 H 0.102 0.898 29 H 0.117 0.883 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.122 0.878 33 H 0.050 0.950 34 H 0.022 0.978 35 H 0.270 0.730 36 H 0.145 0.855 37 H 0.150 0.850 38 H 0.166 0.834 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.052 0.948 42 H 0.131 0.869 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.384 -19.637 -19.348 27.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.167 4.167 3 C 0.006 3.994 4 N -0.302 5.302 5 C 0.104 3.896 6 C -0.578 4.578 7 H 0.045 0.955 8 C -0.183 4.183 9 N -0.582 5.582 10 Si 0.770 3.230 11 H -0.199 1.199 12 H -0.196 1.196 13 H -0.164 1.164 14 C 0.339 3.661 15 O -0.462 6.462 16 C -0.043 4.043 17 C -0.148 4.148 18 C -0.026 4.026 19 C -0.138 4.138 20 C -0.099 4.099 21 C -0.129 4.129 22 C -0.099 4.099 23 C -0.115 4.115 24 C 0.156 3.844 25 O -0.201 6.201 26 C -0.071 4.071 27 N -0.254 5.254 28 H 0.121 0.879 29 H 0.135 0.865 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.139 0.861 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.183 0.817 39 H 0.183 0.817 40 H 0.171 0.829 41 H 0.071 0.929 42 H 0.149 0.851 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.916 -19.183 -18.752 26.841 hybrid contribution 0.363 0.534 1.239 1.397 sum 1.279 -18.649 -17.513 25.615 Atomic orbital electron populations 1.23995 0.94867 1.02925 0.99855 1.22950 0.96015 0.97440 1.00307 1.21381 0.92078 0.95627 0.90314 1.47850 1.15162 1.51274 1.15954 1.19411 0.96044 0.90809 0.83364 1.21484 1.38855 0.94470 1.02978 0.95539 1.25822 0.95991 0.94742 1.01749 1.70044 1.48459 1.06341 1.33375 0.85712 0.79391 0.79161 0.78711 1.19874 1.19581 1.16381 1.18394 0.81733 0.78759 0.87182 1.90696 1.53642 1.61985 1.39899 1.20207 0.91801 1.00444 0.91880 1.22050 0.95907 0.98322 0.98522 1.18118 0.95457 0.97440 0.91568 1.21267 0.93837 0.98806 0.99895 1.21498 1.01275 0.95407 0.91695 1.21447 0.92276 0.98331 1.00812 1.21223 0.98290 0.95573 0.94832 1.18340 0.91365 1.04417 0.97413 1.20303 0.88031 0.89573 0.86454 1.86162 1.22702 1.76466 1.34782 1.23448 0.80316 0.98900 1.04428 1.67568 1.35643 1.21418 1.00814 0.87936 0.86475 0.88731 0.91533 0.86148 0.93244 0.95951 0.92087 0.83737 0.83199 0.81680 0.81650 0.82886 0.92876 0.85131 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.23 14.11 67.78 0.96 -3.27 16 2 C -0.15 -4.37 6.14 25.65 0.16 -4.21 16 3 C 0.13 4.70 5.39 85.63 0.46 5.16 16 4 N -0.57 -26.74 2.46 -833.83 -2.05 -28.79 16 5 C 0.23 11.82 4.22 85.64 0.36 12.18 16 6 C -0.54 -33.25 9.94 25.60 0.25 -32.99 16 7 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 8 C 0.02 0.93 5.47 84.65 0.46 1.40 16 9 N -0.94 -60.75 13.96 21.45 0.30 -60.45 16 10 Si 0.95 45.64 27.47 68.60 1.88 47.52 16 11 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 13 H -0.24 -10.54 6.54 99.48 0.65 -9.89 16 14 C 0.55 26.04 7.57 86.81 0.66 26.70 16 15 O -0.58 -31.44 15.84 -3.86 -0.06 -31.50 16 16 C 0.08 3.03 6.62 41.44 0.27 3.30 16 17 C -0.13 -4.16 9.40 22.88 0.22 -3.95 16 18 C -0.02 -0.56 5.74 -21.30 -0.12 -0.68 16 19 C -0.12 -2.21 9.81 22.31 0.22 -1.99 16 20 C -0.08 -0.98 9.95 22.06 0.22 -0.76 16 21 C -0.11 -1.29 9.95 22.07 0.22 -1.07 16 22 C -0.08 -1.34 9.58 22.27 0.21 -1.12 16 23 C -0.11 -2.75 5.76 -21.19 -0.12 -2.87 16 24 C 0.35 9.54 7.54 85.53 0.65 10.18 16 25 O -0.30 -6.59 9.74 -87.93 -0.86 -7.45 16 26 C 0.02 0.43 9.76 113.37 1.11 1.54 16 27 N -0.52 -17.03 3.55 -297.68 -1.06 -18.08 16 28 H 0.10 2.35 7.84 -2.91 -0.02 2.33 16 29 H 0.12 2.21 8.06 -2.91 -0.02 2.18 16 30 H 0.09 2.93 7.57 -2.91 -0.02 2.90 16 31 H 0.07 2.50 7.67 -2.39 -0.02 2.48 16 32 H 0.12 4.32 3.81 -5.99 -0.02 4.30 16 33 H 0.05 2.40 7.13 -2.39 -0.02 2.38 16 34 H 0.02 1.24 6.80 -2.39 -0.02 1.22 16 35 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 36 H 0.14 4.84 7.61 -2.91 -0.02 4.82 16 37 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 38 H 0.17 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.17 0.74 8.06 -2.91 -0.02 0.72 16 40 H 0.15 2.01 7.65 -2.91 -0.02 1.99 16 41 H 0.05 1.11 7.06 -2.39 -0.02 1.10 16 42 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.07 1.33 5.46 -2.39 -0.01 1.31 16 Total: -1.00 -81.12 356.08 5.30 -75.82 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: 0.96 Total: 15.41 kcal Atomic # 6 Polarization: 1.35 SS G_CDS: 6.18 Total: 7.53 kcal Atomic # 7 Polarization: -104.52 SS G_CDS: -2.81 Total: -107.33 kcal Atomic # 8 Polarization: -38.03 SS G_CDS: -0.92 Total: -38.95 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 1.88 Total: 47.52 kcal Total: -81.12 5.30 -75.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359448590.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.364 kcal (2) G-P(sol) polarization free energy of solvation -81.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds