Wall clock time and date at job start Tue Mar 31 2020 14:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 117.00271 * 2 1 4 4 C 1.38730 * 120.05802 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94665 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05212 * 0.03437 * 5 4 3 7 7 C 1.50702 * 119.94576 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47285 * 89.99278 * 7 6 5 9 9 C 1.34785 * 119.99909 * 180.02562 * 8 7 6 10 10 O 1.21586 * 119.99716 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00023 * 180.02562 * 9 8 7 12 12 C 1.39242 * 119.99912 * 185.17659 * 11 9 8 13 13 C 1.39476 * 119.83869 * 324.03793 * 12 11 9 14 14 C 1.36369 * 120.17099 * 180.25360 * 13 12 11 15 15 C 1.40867 * 119.82822 * 359.49550 * 14 13 12 16 16 C 1.41158 * 120.16598 * 180.22822 * 15 14 13 17 17 H 1.07997 * 120.00581 * 205.07023 * 16 15 14 18 18 C 1.39899 * 119.99459 * 25.07048 * 16 15 14 19 19 N 1.30876 * 120.00056 * 17.74575 * 18 16 15 20 20 Si 1.86804 * 119.99695 * 197.75151 * 18 16 15 21 21 H 1.48491 * 109.47537 * 94.97788 * 20 18 16 22 22 H 1.48501 * 109.47063 * 214.98268 * 20 18 16 23 23 H 1.48500 * 109.46950 * 334.97752 * 20 18 16 24 24 C 1.40872 * 119.67309 * 0.52676 * 15 14 13 25 25 C 1.36369 * 119.82438 * 359.72741 * 24 15 14 26 26 C 1.38265 * 120.11563 * 0.24022 * 6 5 4 27 27 C 1.38154 * 120.05318 * 359.46038 * 26 6 5 28 28 H 1.09007 * 109.47098 * 299.99850 * 1 2 3 29 29 H 1.09001 * 109.47080 * 59.99749 * 1 2 3 30 30 H 1.09000 * 109.47184 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.02647 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97547 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46440 * 329.99325 * 7 6 5 34 34 H 1.08998 * 109.47417 * 209.99563 * 7 6 5 35 35 H 0.96994 * 120.00044 * 0.02562 * 8 7 6 36 36 H 0.97001 * 120.00324 * 5.18176 * 11 9 8 37 37 H 1.08008 * 119.91109 * 359.97438 * 13 12 11 38 38 H 1.08002 * 120.08472 * 179.74947 * 14 13 12 39 39 H 0.97006 * 119.99242 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.08862 * 179.70909 * 24 15 14 41 41 H 1.08007 * 119.91637 * 179.97438 * 25 24 15 42 42 H 1.08000 * 119.97628 * 179.70926 * 26 6 5 43 43 H 1.07999 * 120.02936 * 180.24595 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6757 0.0018 7 6 3.9861 5.0185 0.0030 8 7 4.2082 5.4546 -1.3778 9 6 4.8103 6.6353 -1.6230 10 8 5.1687 7.3386 -0.6982 11 7 5.0142 7.0368 -2.8933 12 6 5.7311 8.2029 -3.1483 13 6 5.6055 9.2961 -2.2913 14 6 6.3004 10.4434 -2.5375 15 6 7.1549 10.5189 -3.6548 16 6 7.8813 11.7012 -3.9136 17 1 8.2002 11.9298 -4.9198 18 6 8.1880 12.5770 -2.8667 19 7 8.1226 12.1630 -1.6268 20 14 8.6909 14.3372 -3.2384 21 1 7.4998 15.2201 -3.1567 22 1 9.7054 14.7816 -2.2492 23 1 9.2675 14.4091 -4.6050 24 6 7.2762 9.4108 -4.5161 25 6 6.5709 8.2721 -4.2598 26 6 1.9211 3.6048 0.0070 27 6 1.2915 2.3751 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0208 0.3799 0.0005 32 1 5.1346 2.5750 0.0011 33 1 4.9439 4.9377 0.5171 34 1 3.3579 5.7459 0.5171 35 1 3.9220 4.8937 -2.1156 36 1 4.6616 6.5134 -3.6299 37 1 4.9526 9.2354 -1.4330 38 1 6.1990 11.2905 -1.8752 39 1 8.3350 12.7705 -0.9009 40 1 7.9258 9.4630 -5.3773 41 1 6.6625 7.4218 -4.9195 42 1 1.3343 4.5114 0.0123 43 1 0.2129 2.3201 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359545526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:22 Heat of formation + Delta-G solvation = -16.216168 kcal Electronic energy + Delta-G solvation = -25408.172130 eV Core-core repulsion = 21611.520130 eV Total energy + Delta-G solvation = -3796.652000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.55289 -39.76921 -38.13938 -37.26507 -34.71150 -34.16974 -32.88288 -31.47368 -30.85611 -29.39919 -28.85039 -27.92565 -25.80427 -24.46039 -22.98795 -21.70253 -21.26937 -20.97943 -19.94965 -18.54815 -17.95147 -17.25495 -16.75846 -16.61507 -16.13866 -15.44264 -15.25358 -15.07042 -14.78507 -14.53888 -14.15894 -13.90565 -13.80341 -13.64707 -13.11452 -12.97037 -12.67060 -12.50876 -12.30073 -12.01262 -11.78398 -11.69327 -11.43445 -11.40437 -11.15348 -11.09440 -10.87816 -10.45300 -9.95587 -9.82352 -9.46500 -9.34424 -9.16882 -8.84396 -8.61866 -8.49120 -7.44524 -6.93340 -6.67310 -4.22510 0.97393 1.02001 2.74577 2.86720 3.06244 3.11699 3.14025 3.15489 3.22471 3.56971 3.79204 3.98389 4.41284 4.51335 4.55409 4.67747 4.70912 4.71242 4.77945 5.00710 5.04625 5.05314 5.28046 5.49470 5.68630 5.74527 5.77993 5.91434 5.98728 6.21363 6.34291 6.39559 6.46544 6.64876 6.89973 6.93453 6.99499 7.12255 7.18317 7.36919 7.42959 7.69517 7.93325 8.08349 8.13383 8.33978 8.57553 8.70758 8.95429 9.00097 9.20424 10.25645 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.039410 B = 0.001836 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.306143 B =15250.254490 C =15511.613358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.319 6.319 3 C 0.130 3.870 4 C -0.154 4.154 5 C -0.059 4.059 6 C -0.140 4.140 7 C 0.186 3.814 8 N -0.750 5.750 9 C 0.693 3.307 10 O -0.575 6.575 11 N -0.667 5.667 12 C 0.011 3.989 13 C -0.085 4.085 14 C -0.157 4.157 15 C 0.104 3.896 16 C -0.462 4.462 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.789 5.789 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.216 4.216 25 C -0.107 4.107 26 C -0.059 4.059 27 C -0.211 4.211 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.100 0.900 31 H 0.132 0.868 32 H 0.133 0.867 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.392 0.608 36 H 0.390 0.610 37 H 0.107 0.893 38 H 0.119 0.881 39 H 0.280 0.720 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.128 0.872 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.052 -20.347 2.942 24.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.085 3.915 4 C -0.173 4.173 5 C -0.078 4.078 6 C -0.141 4.141 7 C 0.062 3.938 8 N -0.407 5.407 9 C 0.394 3.606 10 O -0.452 6.452 11 N -0.313 5.313 12 C -0.081 4.081 13 C -0.106 4.106 14 C -0.177 4.177 15 C 0.102 3.898 16 C -0.491 4.491 17 H 0.096 0.904 18 C -0.144 4.144 19 N -0.414 5.414 20 Si 0.732 3.268 21 H -0.194 1.194 22 H -0.203 1.203 23 H -0.186 1.186 24 C -0.236 4.236 25 C -0.127 4.127 26 C -0.078 4.078 27 C -0.230 4.230 28 H 0.074 0.926 29 H 0.075 0.925 30 H 0.118 0.882 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.225 0.775 36 H 0.223 0.777 37 H 0.125 0.875 38 H 0.136 0.864 39 H 0.091 0.909 40 H 0.113 0.887 41 H 0.107 0.893 42 H 0.146 0.854 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.570 -19.813 4.083 24.359 hybrid contribution -0.300 0.253 -0.741 0.838 sum -13.870 -19.560 3.342 24.210 Atomic orbital electron populations 1.23072 0.78267 1.04005 1.01482 1.86073 1.21507 1.27033 1.88602 1.19105 0.92439 0.84145 0.95852 1.20446 0.91330 0.98744 1.06750 1.20977 1.00212 0.90791 0.95797 1.19880 0.93672 0.94996 1.05530 1.19879 0.99954 0.90970 0.83024 1.45193 1.66373 1.21107 1.08061 1.16050 0.79240 0.81288 0.84039 1.90936 1.56293 1.54722 1.43232 1.42065 1.57451 1.26495 1.05321 1.16992 1.03608 0.86150 1.01396 1.20577 1.00029 0.91939 0.98011 1.20993 0.98589 0.97443 1.00659 1.17669 0.89734 0.91638 0.90784 1.19539 1.30855 1.03530 0.95182 0.90442 1.25929 0.93532 1.00372 0.94523 1.69877 1.35334 1.36215 1.00002 0.86314 0.78913 0.82141 0.79411 1.19392 1.20348 1.18621 1.20521 1.05445 0.93967 1.03649 1.20040 0.97445 0.97704 0.97519 1.20933 0.93907 0.97237 0.95692 1.21240 1.00101 0.92258 1.09381 0.92553 0.92542 0.88204 0.85046 0.84893 0.90885 0.91015 0.77485 0.77733 0.87456 0.86364 0.90866 0.88723 0.89341 0.85397 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.75 10.50 -19.43 -0.20 -2.95 16 3 C 0.13 1.18 6.69 -39.22 -0.26 0.92 16 4 C -0.15 -1.38 9.99 -39.43 -0.39 -1.77 16 5 C -0.06 -0.53 9.69 -39.61 -0.38 -0.92 16 6 C -0.14 -1.34 5.25 -104.60 -0.55 -1.89 16 7 C 0.19 2.20 5.80 -5.19 -0.03 2.17 16 8 N -0.75 -9.79 5.55 -66.41 -0.37 -10.16 16 9 C 0.69 12.76 8.40 -86.92 -0.73 12.03 16 10 O -0.58 -13.35 13.78 5.29 0.07 -13.27 16 11 N -0.67 -12.09 5.31 -14.10 -0.07 -12.17 16 12 C 0.01 0.25 6.30 -83.57 -0.53 -0.27 16 13 C -0.09 -2.19 8.61 -39.79 -0.34 -2.53 16 14 C -0.16 -4.30 8.64 -39.26 -0.34 -4.64 16 15 C 0.10 2.85 5.57 -106.80 -0.59 2.26 16 16 C -0.46 -12.46 9.03 -37.85 -0.34 -12.80 16 17 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 18 C 0.07 1.92 5.13 -17.34 -0.09 1.83 16 19 N -0.79 -21.23 10.98 55.55 0.61 -20.62 16 20 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 21 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 24 C -0.22 -5.33 9.74 -39.26 -0.38 -5.71 16 25 C -0.11 -2.39 9.90 -39.79 -0.39 -2.78 16 26 C -0.06 -0.52 9.69 -39.60 -0.38 -0.90 16 27 C -0.21 -1.73 9.04 -39.43 -0.36 -2.09 16 28 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 29 H 0.06 0.23 7.66 -51.93 -0.40 -0.17 16 30 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.13 1.01 8.06 -52.48 -0.42 0.58 16 32 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 33 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 34 H 0.07 0.89 8.08 -51.93 -0.42 0.47 16 35 H 0.39 4.04 8.48 -40.82 -0.35 3.69 16 36 H 0.39 5.47 8.84 -40.82 -0.36 5.10 16 37 H 0.11 2.79 6.24 -52.48 -0.33 2.46 16 38 H 0.12 3.36 6.19 -52.49 -0.32 3.03 16 39 H 0.28 6.87 8.30 -40.82 -0.34 6.53 16 40 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 41 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 42 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 43 H 0.13 0.79 6.30 -52.49 -0.33 0.46 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -32.95 366.48 -9.99 -42.94 By element: Atomic # 1 Polarization: 18.10 SS G_CDS: -5.41 Total: 12.69 kcal Atomic # 6 Polarization: -10.87 SS G_CDS: -5.11 Total: -15.97 kcal Atomic # 7 Polarization: -43.12 SS G_CDS: 0.17 Total: -42.95 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.13 Total: -16.23 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.95 -9.99 -42.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359545526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.725 kcal (2) G-P(sol) polarization free energy of solvation -32.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds