Wall clock time and date at job start Tue Mar 31 2020 14:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35902 * 117.00271 * 2 1 4 4 C 1.38730 * 120.05802 * 179.97438 * 3 2 1 5 5 C 1.38144 * 119.94665 * 180.02562 * 4 3 2 6 6 C 1.38264 * 120.05212 * 0.03437 * 5 4 3 7 7 C 1.50702 * 119.94576 * 179.97438 * 6 5 4 8 8 N 1.46496 * 109.47285 * 89.99278 * 7 6 5 9 9 C 1.34785 * 119.99909 * 180.02562 * 8 7 6 10 10 O 1.21586 * 119.99716 * 359.97438 * 9 8 7 11 11 N 1.34768 * 120.00023 * 180.02562 * 9 8 7 12 12 C 1.39242 * 119.99912 * 185.17659 * 11 9 8 13 13 C 1.39476 * 119.83869 * 324.03793 * 12 11 9 14 14 C 1.36369 * 120.17099 * 180.25360 * 13 12 11 15 15 C 1.40867 * 119.82822 * 359.49550 * 14 13 12 16 16 C 1.41158 * 120.16598 * 180.22822 * 15 14 13 17 17 H 1.07997 * 120.00581 * 205.07023 * 16 15 14 18 18 C 1.39899 * 119.99459 * 25.07048 * 16 15 14 19 19 N 1.30876 * 120.00056 * 17.74575 * 18 16 15 20 20 Si 1.86804 * 119.99695 * 197.75151 * 18 16 15 21 21 H 1.48491 * 109.47537 * 94.97788 * 20 18 16 22 22 H 1.48501 * 109.47063 * 214.98268 * 20 18 16 23 23 H 1.48500 * 109.46950 * 334.97752 * 20 18 16 24 24 C 1.40872 * 119.67309 * 0.52676 * 15 14 13 25 25 C 1.36369 * 119.82438 * 359.72741 * 24 15 14 26 26 C 1.38265 * 120.11563 * 0.24022 * 6 5 4 27 27 C 1.38154 * 120.05318 * 359.46038 * 26 6 5 28 28 H 1.09007 * 109.47098 * 299.99850 * 1 2 3 29 29 H 1.09001 * 109.47080 * 59.99749 * 1 2 3 30 30 H 1.09000 * 109.47184 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.02647 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.97547 * 180.02562 * 5 4 3 33 33 H 1.09005 * 109.46440 * 329.99325 * 7 6 5 34 34 H 1.08998 * 109.47417 * 209.99563 * 7 6 5 35 35 H 0.96994 * 120.00044 * 0.02562 * 8 7 6 36 36 H 0.97001 * 120.00324 * 5.18176 * 11 9 8 37 37 H 1.08008 * 119.91109 * 359.97438 * 13 12 11 38 38 H 1.08002 * 120.08472 * 179.74947 * 14 13 12 39 39 H 0.97006 * 119.99242 * 180.02562 * 19 18 16 40 40 H 1.07997 * 120.08862 * 179.70909 * 24 15 14 41 41 H 1.08007 * 119.91637 * 179.97438 * 25 24 15 42 42 H 1.08000 * 119.97628 * 179.70926 * 26 6 5 43 43 H 1.07999 * 120.02936 * 180.24595 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0011 6 6 3.3020 3.6757 0.0018 7 6 3.9861 5.0185 0.0030 8 7 4.2082 5.4546 -1.3778 9 6 4.8103 6.6353 -1.6230 10 8 5.1687 7.3386 -0.6982 11 7 5.0142 7.0368 -2.8933 12 6 5.7311 8.2029 -3.1483 13 6 5.6055 9.2961 -2.2913 14 6 6.3004 10.4434 -2.5375 15 6 7.1549 10.5189 -3.6548 16 6 7.8813 11.7012 -3.9136 17 1 8.2002 11.9298 -4.9198 18 6 8.1880 12.5770 -2.8667 19 7 8.1226 12.1630 -1.6268 20 14 8.6909 14.3372 -3.2384 21 1 7.4998 15.2201 -3.1567 22 1 9.7054 14.7816 -2.2492 23 1 9.2675 14.4091 -4.6050 24 6 7.2762 9.4108 -4.5161 25 6 6.5709 8.2721 -4.2598 26 6 1.9211 3.6048 0.0070 27 6 1.2915 2.3751 0.0002 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 4.0208 0.3799 0.0005 32 1 5.1346 2.5750 0.0011 33 1 4.9439 4.9377 0.5171 34 1 3.3579 5.7459 0.5171 35 1 3.9220 4.8937 -2.1156 36 1 4.6616 6.5134 -3.6299 37 1 4.9526 9.2354 -1.4330 38 1 6.1990 11.2905 -1.8752 39 1 8.3350 12.7705 -0.9009 40 1 7.9258 9.4630 -5.3773 41 1 6.6625 7.4218 -4.9195 42 1 1.3343 4.5114 0.0123 43 1 0.2129 2.3201 0.0003 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359545526.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:21 Heat of formation + Delta-G solvation = -36.895163 kcal Electronic energy + Delta-G solvation = -25409.068838 eV Core-core repulsion = 21611.520130 eV Total energy + Delta-G solvation = -3797.548709 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.142 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.46261 -41.02033 -39.31911 -38.61547 -36.26080 -35.61318 -34.67201 -32.16115 -31.83438 -31.32912 -30.56347 -28.50056 -27.08224 -25.93990 -23.64288 -23.25666 -22.89592 -22.12986 -21.57635 -19.44917 -19.20469 -19.09690 -18.26811 -17.31878 -17.06400 -16.66243 -16.47833 -16.30521 -16.09430 -15.70074 -15.45055 -15.16676 -14.71566 -14.70662 -14.49872 -14.44125 -13.92225 -13.75130 -13.54596 -13.51916 -13.26939 -12.82376 -12.79237 -12.63581 -12.48522 -12.29373 -12.00823 -11.75994 -11.73001 -11.69886 -11.25647 -10.98891 -10.47331 -10.09508 -9.98636 -9.41200 -9.19468 -8.81541 -8.57912 -6.23353 0.25740 0.36106 0.90454 1.18275 1.39379 1.50346 1.54234 1.86411 2.21648 2.25053 2.35864 2.76031 2.80914 3.50722 3.71213 3.77984 3.80693 3.93578 4.19922 4.37450 4.40124 4.41177 4.47125 4.53451 4.59174 4.70162 4.76249 4.76815 5.01961 5.06554 5.13256 5.21111 5.23093 5.32841 5.34129 5.46074 5.49036 5.61894 5.71422 5.75045 5.83013 6.12978 6.16073 6.24508 6.39941 6.41316 6.72566 6.96183 7.05670 7.20458 7.71278 8.36817 Molecular weight = 326.14amu Principal moments of inertia in cm(-1) A = 0.039410 B = 0.001836 C = 0.001805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.306143 B =15250.254490 C =15511.613358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.335 6.335 3 C 0.124 3.876 4 C -0.164 4.164 5 C -0.060 4.060 6 C -0.146 4.146 7 C 0.188 3.812 8 N -0.724 5.724 9 C 0.691 3.309 10 O -0.626 6.626 11 N -0.657 5.657 12 C 0.026 3.974 13 C -0.100 4.100 14 C -0.181 4.181 15 C 0.071 3.929 16 C -0.496 4.496 17 H 0.082 0.918 18 C 0.029 3.971 19 N -0.830 5.830 20 Si 0.985 3.015 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.253 1.253 24 C -0.222 4.222 25 C -0.100 4.100 26 C -0.060 4.060 27 C -0.211 4.211 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.118 0.882 31 H 0.140 0.860 32 H 0.140 0.860 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.410 0.590 36 H 0.414 0.586 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.286 0.714 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.138 0.862 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.036 -22.170 1.692 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.249 6.249 3 C 0.078 3.922 4 C -0.182 4.182 5 C -0.079 4.079 6 C -0.147 4.147 7 C 0.065 3.935 8 N -0.381 5.381 9 C 0.392 3.608 10 O -0.507 6.507 11 N -0.305 5.305 12 C -0.068 4.068 13 C -0.120 4.120 14 C -0.201 4.201 15 C 0.069 3.931 16 C -0.525 4.525 17 H 0.100 0.900 18 C -0.185 4.185 19 N -0.456 5.456 20 Si 0.806 3.194 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.176 1.176 24 C -0.242 4.242 25 C -0.120 4.120 26 C -0.079 4.079 27 C -0.229 4.229 28 H 0.083 0.917 29 H 0.084 0.916 30 H 0.136 0.864 31 H 0.158 0.842 32 H 0.158 0.842 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.246 0.754 36 H 0.251 0.749 37 H 0.114 0.886 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.128 0.872 41 H 0.152 0.848 42 H 0.155 0.845 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -14.605 -21.726 2.796 26.328 hybrid contribution -0.137 0.559 -0.311 0.654 sum -14.742 -21.167 2.485 25.914 Atomic orbital electron populations 1.23353 0.76407 1.05597 1.02335 1.86058 1.23511 1.26894 1.88429 1.19303 0.92712 0.84712 0.95434 1.20614 0.91746 0.99009 1.06863 1.21053 1.00620 0.90668 0.95518 1.19647 0.94042 0.93727 1.07307 1.19883 0.99617 0.92146 0.81871 1.44986 1.64389 1.19279 1.09465 1.16237 0.79133 0.82131 0.83324 1.90917 1.58401 1.56615 1.44745 1.41817 1.57026 1.25370 1.06327 1.17034 1.02874 0.86606 1.00333 1.20602 1.00176 0.92732 0.98529 1.20881 1.00296 0.97645 1.01311 1.18018 0.90410 0.93125 0.91592 1.19823 1.32155 1.04732 0.95817 0.90022 1.26864 0.93011 1.04672 0.93925 1.69961 1.36551 1.37973 1.01143 0.85147 0.78664 0.76024 0.79568 1.18873 1.19538 1.17640 1.20806 1.05863 0.93966 1.03601 1.20394 0.95828 0.98278 0.97524 1.21069 0.93586 0.97993 0.95237 1.21446 1.01214 0.91615 1.08642 0.91680 0.91630 0.86421 0.84181 0.84238 0.91906 0.91715 0.75353 0.74863 0.88620 0.88749 0.90353 0.87154 0.84819 0.84460 0.83293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.81 113.37 1.11 1.24 16 2 O -0.34 -5.13 10.50 -92.45 -0.97 -6.10 16 3 C 0.12 2.02 6.69 22.51 0.15 2.17 16 4 C -0.16 -2.67 9.99 22.37 0.22 -2.44 16 5 C -0.06 -0.99 9.69 22.25 0.22 -0.78 16 6 C -0.15 -2.59 5.25 -19.85 -0.10 -2.70 16 7 C 0.19 4.31 5.80 85.63 0.50 4.81 16 8 N -0.72 -17.74 5.55 -482.29 -2.68 -20.42 16 9 C 0.69 24.82 8.40 179.05 1.50 26.32 16 10 O -0.63 -29.54 13.78 -3.99 -0.05 -29.60 16 11 N -0.66 -22.56 5.31 -316.78 -1.68 -24.24 16 12 C 0.03 1.15 6.30 38.56 0.24 1.39 16 13 C -0.10 -5.28 8.61 22.13 0.19 -5.09 16 14 C -0.18 -10.40 8.64 22.48 0.19 -10.21 16 15 C 0.07 3.99 5.57 -21.27 -0.12 3.87 16 16 C -0.50 -27.48 9.03 23.39 0.21 -27.27 16 17 H 0.08 4.28 7.91 -2.91 -0.02 4.25 16 18 C 0.03 1.56 5.13 85.24 0.44 1.99 16 19 N -0.83 -46.53 10.98 21.82 0.24 -46.29 16 20 Si 0.99 39.65 29.59 68.60 2.03 41.68 16 21 H -0.26 -10.31 7.11 99.48 0.71 -9.61 16 22 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 23 H -0.25 -9.69 7.11 99.48 0.71 -8.99 16 24 C -0.22 -10.86 9.74 22.48 0.22 -10.64 16 25 C -0.10 -4.27 9.90 22.13 0.22 -4.05 16 26 C -0.06 -0.94 9.69 22.26 0.22 -0.72 16 27 C -0.21 -2.97 9.04 22.37 0.20 -2.77 16 28 H 0.06 0.36 7.66 -2.38 -0.02 0.35 16 29 H 0.07 0.36 7.66 -2.39 -0.02 0.34 16 30 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 33 H 0.06 1.59 8.08 -2.38 -0.02 1.57 16 34 H 0.06 1.60 8.08 -2.39 -0.02 1.58 16 35 H 0.41 7.32 8.48 -92.71 -0.79 6.53 16 36 H 0.41 10.22 8.84 -92.71 -0.82 9.40 16 37 H 0.10 5.21 6.24 -2.91 -0.02 5.19 16 38 H 0.09 5.74 6.19 -2.91 -0.02 5.73 16 39 H 0.29 14.57 8.30 -92.70 -0.77 13.80 16 40 H 0.11 4.94 8.06 -2.91 -0.02 4.91 16 41 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 42 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 43 H 0.15 1.40 6.30 -2.91 -0.02 1.38 16 Total: -1.00 -74.48 366.48 1.95 -72.53 By element: Atomic # 1 Polarization: 37.86 SS G_CDS: -0.54 Total: 37.32 kcal Atomic # 6 Polarization: -30.49 SS G_CDS: 5.61 Total: -24.88 kcal Atomic # 7 Polarization: -86.83 SS G_CDS: -4.12 Total: -90.95 kcal Atomic # 8 Polarization: -34.67 SS G_CDS: -1.03 Total: -35.70 kcal Atomic # 14 Polarization: 39.65 SS G_CDS: 2.03 Total: 41.68 kcal Total: -74.48 1.95 -72.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359545526.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.632 kcal (2) G-P(sol) polarization free energy of solvation -74.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.895 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds