Wall clock time and date at job start Tue Mar 31 2020 15:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99912 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00222 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00019 * 180.02562 * 13 12 11 16 16 H 1.09006 * 108.70450 * 61.74533 * 15 13 12 17 17 C 1.54561 * 108.75579 * 303.64696 * 15 13 12 18 18 S 1.84213 * 101.32651 * 215.93415 * 17 15 13 19 19 C 1.84078 * 93.91250 * 32.25166 * 18 17 15 20 20 N 1.45499 * 108.75725 * 180.02562 * 15 13 12 21 21 C 1.34784 * 122.43043 * 299.91576 * 20 15 13 22 22 O 1.21275 * 119.99606 * 359.97438 * 21 20 15 23 23 C 1.50698 * 119.99978 * 179.97438 * 21 20 15 24 24 C 1.53783 * 113.61280 * 279.13462 * 23 21 20 25 25 C 1.53956 * 87.01849 * 220.04757 * 24 23 21 26 26 C 1.53784 * 113.61268 * 181.52750 * 23 21 20 27 27 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 29 29 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 30 30 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 31 31 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 32 32 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 33 33 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 34 34 H 0.96992 * 119.99570 * 0.02562 * 12 11 10 35 35 H 1.08997 * 111.04854 * 333.94089 * 17 15 13 36 36 H 1.08997 * 111.05256 * 97.92059 * 17 15 13 37 37 H 1.09001 * 110.77483 * 208.27745 * 19 18 17 38 38 H 1.08996 * 110.77207 * 84.85178 * 19 18 17 39 39 H 1.09005 * 112.85140 * 50.33313 * 23 21 20 40 40 H 1.08999 * 113.61573 * 334.57316 * 24 23 21 41 41 H 1.09000 * 113.60906 * 105.47338 * 24 23 21 42 42 H 1.08998 * 113.53714 * 270.81196 * 25 24 23 43 43 H 1.09000 * 113.66697 * 139.93256 * 25 24 23 44 44 H 1.08995 * 113.61177 * 254.53056 * 26 23 21 45 45 H 1.08998 * 113.61173 * 25.35108 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 7 6.0396 -4.0181 0.0004 13 6 7.3646 -4.2644 -0.0001 14 8 8.1528 -3.3426 -0.0005 15 6 7.8669 -5.6852 -0.0002 16 1 7.5223 -6.1778 -0.9095 17 6 7.2685 -6.4240 1.2185 18 16 8.6677 -7.5215 1.6991 19 6 9.9576 -6.3251 1.1575 20 7 9.3218 -5.6671 -0.0001 21 6 10.0376 -5.0907 -0.9861 22 8 9.4696 -4.5620 -1.9181 23 6 11.5435 -5.1033 -0.9303 24 6 12.1353 -4.0142 -0.0202 25 6 13.2237 -3.8229 -1.0921 26 6 12.2096 -4.3736 -2.1087 27 1 -0.4850 0.8401 -0.0004 28 1 3.8751 -0.6798 -0.8895 29 1 3.8745 -0.6810 0.8905 30 1 3.6577 -3.1507 0.8897 31 1 3.6584 -3.1504 -0.8902 32 1 5.9147 -2.1229 -0.8901 33 1 5.9147 -2.1231 0.8899 34 1 5.4093 -4.7553 0.0003 35 1 7.0259 -5.7255 2.0193 36 1 6.3937 -7.0075 0.9317 37 1 10.8660 -6.8463 0.8556 38 1 10.1690 -5.6019 1.9451 39 1 11.9519 -6.0968 -0.7449 40 1 11.4860 -3.1473 0.1025 41 1 12.5164 -4.3963 0.9269 42 1 14.0924 -4.4657 -0.9500 43 1 13.4910 -2.7801 -1.2631 44 1 12.6505 -5.0453 -2.8452 45 1 11.5802 -3.6061 -2.5590 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361668053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:44 Heat of formation + Delta-G solvation = -47.394518 kcal Electronic energy + Delta-G solvation = -25672.691488 eV Core-core repulsion = 22010.131444 eV Total energy + Delta-G solvation = -3662.560044 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.07924 -39.57071 -37.72557 -36.34426 -35.49998 -33.47433 -32.21864 -31.09194 -27.89539 -27.21109 -27.17270 -25.95693 -24.34097 -22.81347 -21.25625 -20.64111 -19.86551 -19.22878 -18.06810 -17.68665 -17.38463 -16.77866 -15.89785 -15.82805 -15.63640 -15.34197 -15.04785 -14.67850 -14.45911 -14.14245 -13.81304 -13.68007 -13.30100 -13.28629 -12.81176 -12.72517 -12.59846 -12.49623 -12.27654 -11.99915 -11.88475 -11.57264 -11.24935 -11.10314 -10.91035 -10.87459 -10.75677 -10.22760 -10.03905 -9.94421 -9.81295 -9.68487 -9.25347 -9.08200 -8.92017 -8.57105 -8.38758 -6.07991 -4.06775 1.07924 1.43536 2.17857 2.42478 2.57270 3.24504 3.30390 3.37861 3.41925 3.75547 4.11418 4.18708 4.29337 4.32189 4.41051 4.43044 4.46250 4.63926 4.71407 4.80825 4.87615 5.11146 5.14591 5.26159 5.33197 5.46492 5.50056 5.56769 5.62036 5.63655 5.72401 5.75042 5.97808 6.11222 6.28596 6.41269 6.64277 6.75653 6.83367 7.20269 7.33681 7.50914 7.74345 7.88365 8.22038 8.48373 8.95671 9.54313 11.05224 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.002677 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.345155 B =10458.441009 C =11790.119853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.072 0.928 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.117 3.883 12 N -0.723 5.723 13 C 0.504 3.496 14 O -0.519 6.519 15 C 0.115 3.885 16 H 0.113 0.887 17 C -0.068 4.068 18 S -0.257 6.257 19 C 0.156 3.844 20 N -0.602 5.602 21 C 0.545 3.455 22 O -0.509 6.509 23 C -0.135 4.135 24 C -0.122 4.122 25 C -0.141 4.141 26 C -0.117 4.117 27 H 0.263 0.737 28 H 0.014 0.986 29 H 0.018 0.982 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.399 0.601 35 H 0.109 0.891 36 H 0.133 0.867 37 H 0.118 0.882 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.097 -16.851 2.407 31.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.560 4.560 8 H 0.090 0.910 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.006 4.006 12 N -0.374 5.374 13 C 0.286 3.714 14 O -0.394 6.394 15 C 0.005 3.995 16 H 0.131 0.869 17 C -0.217 4.217 18 S -0.031 6.031 19 C -0.078 4.078 20 N -0.339 5.339 21 C 0.333 3.667 22 O -0.382 6.382 23 C -0.157 4.157 24 C -0.160 4.160 25 C -0.179 4.179 26 C -0.154 4.154 27 H 0.073 0.927 28 H 0.033 0.967 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.233 0.767 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.136 0.864 38 H 0.116 0.884 39 H 0.130 0.870 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.091 0.909 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 26.286 -16.875 2.370 31.326 hybrid contribution -0.204 1.531 -0.343 1.582 sum 26.083 -15.344 2.027 30.329 Atomic orbital electron populations 1.69910 1.06309 1.26973 1.50957 1.25025 0.94748 0.99233 0.94448 0.86779 0.80373 0.83540 0.78631 1.20216 1.21349 1.18939 1.21086 0.89265 0.94513 1.51154 0.90988 1.19500 0.97300 0.91434 0.96655 1.21704 0.90489 1.01117 1.01753 1.21660 0.96163 0.80829 1.01960 1.46086 1.06157 1.10198 1.75000 1.20533 0.83049 0.90672 0.77159 1.90704 1.55154 1.45381 1.48126 1.21182 0.82387 0.95153 1.00737 0.86936 1.24559 0.99200 0.99345 0.98550 1.88417 1.03245 1.27255 1.84152 1.24247 0.97414 0.95490 0.90616 1.48175 1.03899 1.58619 1.23202 1.20333 0.89346 0.76390 0.80638 1.90734 1.71998 1.42046 1.33402 1.22816 0.90459 1.00975 1.01414 1.22881 0.97858 0.98169 0.97105 1.22854 0.96753 1.01999 0.96276 1.22810 0.97174 1.00079 0.95370 0.92678 0.96741 0.96354 0.92058 0.92059 0.91724 0.91825 0.76747 0.87203 0.84907 0.86434 0.88390 0.87038 0.89048 0.90764 0.89898 0.90790 0.90943 0.88523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.72 13.96 55.43 0.77 -26.94 16 2 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 3 Si 0.88 21.81 27.47 -169.99 -4.67 17.14 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 6 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 7 C -0.52 -14.67 9.66 -34.44 -0.33 -15.00 16 8 H 0.07 2.15 7.99 -52.49 -0.42 1.73 16 9 C -0.01 -0.26 4.04 -27.88 -0.11 -0.37 16 10 C -0.11 -2.07 5.27 -26.74 -0.14 -2.21 16 11 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 12 N -0.72 -9.54 5.42 -60.29 -0.33 -9.86 16 13 C 0.50 7.11 6.46 -10.99 -0.07 7.03 16 14 O -0.52 -9.45 14.59 -13.86 -0.20 -9.65 16 15 C 0.11 1.19 2.87 -68.80 -0.20 0.99 16 16 H 0.11 1.12 8.14 -51.93 -0.42 0.70 16 17 C -0.07 -0.50 6.68 37.98 0.25 -0.24 16 18 S -0.26 -2.01 23.43 -107.50 -2.52 -4.53 16 19 C 0.16 1.11 7.21 60.43 0.44 1.55 16 20 N -0.60 -6.19 2.76 -169.19 -0.47 -6.66 16 21 C 0.55 6.64 6.27 -10.98 -0.07 6.57 16 22 O -0.51 -8.45 14.58 -13.85 -0.20 -8.66 16 23 C -0.14 -1.13 3.10 -90.96 -0.28 -1.41 16 24 C -0.12 -0.94 7.64 -25.83 -0.20 -1.14 16 25 C -0.14 -0.94 8.09 -25.82 -0.21 -1.15 16 26 C -0.12 -1.00 7.40 -25.91 -0.19 -1.19 16 27 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 28 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 29 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 30 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.40 4.01 8.23 -40.82 -0.34 3.68 16 35 H 0.11 0.83 7.85 -51.93 -0.41 0.42 16 36 H 0.13 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.12 0.56 6.94 -51.93 -0.36 0.20 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.11 0.62 7.30 -51.93 -0.38 0.24 16 40 H 0.09 0.95 8.09 -51.93 -0.42 0.53 16 41 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.10 1.08 7.45 -51.93 -0.39 0.70 16 LS Contribution 375.28 15.07 5.66 5.66 Total: -1.00 -36.03 375.28 -10.49 -46.51 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -7.29 Total: -0.18 kcal Atomic # 6 Polarization: -1.59 SS G_CDS: -1.23 Total: -2.83 kcal Atomic # 7 Polarization: -43.45 SS G_CDS: -0.02 Total: -43.47 kcal Atomic # 8 Polarization: -17.91 SS G_CDS: -0.40 Total: -18.31 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -4.67 Total: 17.14 kcal Atomic # 16 Polarization: -2.01 SS G_CDS: -2.52 Total: -4.53 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.03 -10.49 -46.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361668053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.880 kcal (2) G-P(sol) polarization free energy of solvation -36.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds