Wall clock time and date at job start Tue Mar 31 2020 15:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47482 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47485 * 179.97438 * 11 10 9 13 13 C 1.34770 * 119.99912 * 179.97438 * 12 11 10 14 14 O 1.21286 * 120.00222 * 0.02562 * 13 12 11 15 15 C 1.50698 * 120.00019 * 180.02562 * 13 12 11 16 16 H 1.09006 * 108.70450 * 61.74533 * 15 13 12 17 17 C 1.54561 * 108.75579 * 303.64696 * 15 13 12 18 18 S 1.84213 * 101.32651 * 215.93415 * 17 15 13 19 19 C 1.84078 * 93.91250 * 32.25166 * 18 17 15 20 20 N 1.45499 * 108.75725 * 180.02562 * 15 13 12 21 21 C 1.34784 * 122.43043 * 299.91576 * 20 15 13 22 22 O 1.21275 * 119.99606 * 359.97438 * 21 20 15 23 23 C 1.50698 * 119.99978 * 179.97438 * 21 20 15 24 24 C 1.53783 * 113.61280 * 279.13462 * 23 21 20 25 25 C 1.53956 * 87.01849 * 220.04757 * 24 23 21 26 26 C 1.53784 * 113.61268 * 181.52750 * 23 21 20 27 27 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 28 28 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 29 29 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 30 30 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 31 31 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 32 32 H 1.09002 * 109.47103 * 300.00247 * 11 10 9 33 33 H 1.09001 * 109.47066 * 60.00169 * 11 10 9 34 34 H 0.96992 * 119.99570 * 0.02562 * 12 11 10 35 35 H 1.08997 * 111.04854 * 333.94089 * 17 15 13 36 36 H 1.08997 * 111.05256 * 97.92059 * 17 15 13 37 37 H 1.09001 * 110.77483 * 208.27745 * 19 18 17 38 38 H 1.08996 * 110.77207 * 84.85178 * 19 18 17 39 39 H 1.09005 * 112.85140 * 50.33313 * 23 21 20 40 40 H 1.08999 * 113.61573 * 334.57316 * 24 23 21 41 41 H 1.09000 * 113.60906 * 105.47338 * 24 23 21 42 42 H 1.08998 * 113.53714 * 270.81196 * 25 24 23 43 43 H 1.09000 * 113.66697 * 139.93256 * 25 24 23 44 44 H 1.08995 * 113.61177 * 254.53056 * 26 23 21 45 45 H 1.08998 * 113.61173 * 25.35108 * 26 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5513 -2.6368 -0.0001 12 7 6.0396 -4.0181 0.0004 13 6 7.3646 -4.2644 -0.0001 14 8 8.1528 -3.3426 -0.0005 15 6 7.8669 -5.6852 -0.0002 16 1 7.5223 -6.1778 -0.9095 17 6 7.2685 -6.4240 1.2185 18 16 8.6677 -7.5215 1.6991 19 6 9.9576 -6.3251 1.1575 20 7 9.3218 -5.6671 -0.0001 21 6 10.0376 -5.0907 -0.9861 22 8 9.4696 -4.5620 -1.9181 23 6 11.5435 -5.1033 -0.9303 24 6 12.1353 -4.0142 -0.0202 25 6 13.2237 -3.8229 -1.0921 26 6 12.2096 -4.3736 -2.1087 27 1 -0.4850 0.8401 -0.0004 28 1 3.8751 -0.6798 -0.8895 29 1 3.8745 -0.6810 0.8905 30 1 3.6577 -3.1507 0.8897 31 1 3.6584 -3.1504 -0.8902 32 1 5.9147 -2.1229 -0.8901 33 1 5.9147 -2.1231 0.8899 34 1 5.4093 -4.7553 0.0003 35 1 7.0259 -5.7255 2.0193 36 1 6.3937 -7.0075 0.9317 37 1 10.8660 -6.8463 0.8556 38 1 10.1690 -5.6019 1.9451 39 1 11.9519 -6.0968 -0.7449 40 1 11.4860 -3.1473 0.1025 41 1 12.5164 -4.3963 0.9269 42 1 14.0924 -4.4657 -0.9500 43 1 13.4910 -2.7801 -1.2631 44 1 12.6505 -5.0453 -2.8452 45 1 11.5802 -3.6061 -2.5590 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361668053.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:44 Heat of formation + Delta-G solvation = -71.183742 kcal Electronic energy + Delta-G solvation = -25673.723066 eV Core-core repulsion = 22010.131444 eV Total energy + Delta-G solvation = -3663.591622 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 326.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.97005 -40.55019 -38.52620 -37.30688 -36.90680 -35.23300 -33.65293 -32.39275 -29.07740 -28.40081 -27.83231 -26.58299 -25.47890 -24.17774 -22.32381 -22.13071 -20.81907 -20.04777 -19.08933 -18.75438 -18.55161 -18.14546 -16.91357 -16.81652 -16.59568 -16.35753 -16.19530 -15.86206 -15.63422 -15.30729 -14.83280 -14.76790 -14.51940 -14.27996 -13.96688 -13.83652 -13.71329 -13.48446 -13.18575 -13.12053 -12.93250 -12.77210 -12.72349 -12.28110 -12.04811 -11.87534 -11.78562 -11.63129 -11.46731 -11.35994 -11.33640 -11.01727 -10.78522 -10.72288 -10.17806 -9.97115 -8.96749 -8.31558 -6.35173 0.50406 0.83013 1.34459 1.34943 1.35837 1.46829 1.47364 1.65095 2.19311 2.33874 3.03201 3.04175 3.41397 3.51854 3.55373 3.69128 3.84255 3.87932 3.93322 4.05310 4.14524 4.15357 4.24574 4.34649 4.42055 4.45398 4.63972 4.77574 4.82175 4.83556 4.84050 4.95689 5.00077 5.00935 5.07330 5.14276 5.31948 5.45339 5.50554 5.52195 5.62563 6.03469 6.25184 6.44800 6.72736 7.01079 7.15526 7.29668 8.84772 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.015523 B = 0.002677 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.345155 B =10458.441009 C =11790.119853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.006 3.994 3 Si 0.945 3.055 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.249 1.249 7 C -0.529 4.529 8 H 0.040 0.960 9 C -0.012 4.012 10 C -0.098 4.098 11 C 0.131 3.869 12 N -0.712 5.712 13 C 0.500 3.500 14 O -0.564 6.564 15 C 0.118 3.882 16 H 0.118 0.882 17 C -0.061 4.061 18 S -0.259 6.259 19 C 0.154 3.846 20 N -0.604 5.604 21 C 0.536 3.464 22 O -0.566 6.566 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.128 4.128 26 C -0.127 4.127 27 H 0.266 0.734 28 H 0.015 0.985 29 H 0.021 0.979 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.416 0.584 35 H 0.110 0.890 36 H 0.160 0.840 37 H 0.148 0.852 38 H 0.105 0.895 39 H 0.151 0.849 40 H 0.054 0.946 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.737 -18.427 3.563 34.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.191 4.191 3 Si 0.769 3.231 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.567 4.567 8 H 0.058 0.942 9 C -0.050 4.050 10 C -0.136 4.136 11 C 0.007 3.993 12 N -0.365 5.365 13 C 0.284 3.716 14 O -0.442 6.442 15 C 0.008 3.992 16 H 0.135 0.865 17 C -0.210 4.210 18 S -0.033 6.033 19 C -0.079 4.079 20 N -0.339 5.339 21 C 0.325 3.675 22 O -0.443 6.443 23 C -0.150 4.150 24 C -0.158 4.158 25 C -0.166 4.166 26 C -0.165 4.165 27 H 0.075 0.925 28 H 0.033 0.967 29 H 0.039 0.961 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.065 0.935 33 H 0.077 0.923 34 H 0.253 0.747 35 H 0.128 0.872 36 H 0.178 0.822 37 H 0.166 0.834 38 H 0.123 0.877 39 H 0.168 0.832 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.131 0.869 43 H 0.086 0.914 44 H 0.105 0.895 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 28.928 -18.514 3.565 34.530 hybrid contribution -1.079 1.949 -0.703 2.337 sum 27.848 -16.565 2.862 32.528 Atomic orbital electron populations 1.70050 1.08125 1.28123 1.52645 1.25952 0.95579 1.03306 0.94267 0.85732 0.79524 0.78776 0.79082 1.19507 1.20820 1.17290 1.21446 0.91747 0.93335 1.50214 0.94151 1.19466 0.94227 0.94739 0.96613 1.21472 0.91619 0.98123 1.02422 1.21252 0.94594 0.82564 1.00901 1.45886 1.06602 1.09440 1.74575 1.21245 0.82589 0.91997 0.75734 1.90688 1.56236 1.47179 1.50080 1.21248 0.82874 0.92549 1.02508 0.86486 1.24610 0.99929 0.99333 0.97078 1.88475 1.03409 1.27266 1.84109 1.24516 0.98105 0.95566 0.89664 1.48312 1.03969 1.58001 1.23593 1.21104 0.90969 0.75335 0.80046 1.90701 1.73318 1.44542 1.35745 1.22995 0.87760 1.02979 1.01291 1.22822 0.97520 0.96712 0.98760 1.22864 0.96924 1.02283 0.94480 1.22797 0.97602 0.99756 0.96335 0.92475 0.96713 0.96069 0.91000 0.91813 0.93534 0.92311 0.74715 0.87185 0.82184 0.83444 0.87666 0.83183 0.92676 0.87827 0.86860 0.91352 0.89500 0.92340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.38 13.96 21.45 0.30 -59.09 16 2 C 0.01 0.35 5.47 84.66 0.46 0.81 16 3 Si 0.95 44.90 27.47 68.60 1.88 46.78 16 4 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 5 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.25 -11.12 6.54 99.48 0.65 -10.47 16 7 C -0.53 -30.11 9.66 25.60 0.25 -29.86 16 8 H 0.04 2.48 7.99 -2.91 -0.02 2.45 16 9 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 10 C -0.10 -3.54 5.27 30.59 0.16 -3.38 16 11 C 0.13 4.26 5.67 86.38 0.49 4.75 16 12 N -0.71 -18.21 5.42 -463.06 -2.51 -20.72 16 13 C 0.50 13.97 6.46 87.66 0.57 14.53 16 14 O -0.56 -21.02 14.59 15.51 0.23 -20.79 16 15 C 0.12 2.29 2.87 44.96 0.13 2.42 16 16 H 0.12 2.20 8.14 -2.38 -0.02 2.18 16 17 C -0.06 -0.75 6.68 72.51 0.48 -0.26 16 18 S -0.26 -3.31 23.43 -56.49 -1.32 -4.63 16 19 C 0.15 1.75 7.21 127.56 0.92 2.67 16 20 N -0.60 -11.58 2.76 -807.59 -2.23 -13.81 16 21 C 0.54 12.88 6.27 87.66 0.55 13.43 16 22 O -0.57 -19.60 14.58 15.55 0.23 -19.38 16 23 C -0.13 -1.93 3.10 -11.01 -0.03 -1.96 16 24 C -0.12 -1.66 7.64 31.18 0.24 -1.42 16 25 C -0.13 -1.47 8.09 31.18 0.25 -1.22 16 26 C -0.13 -2.12 7.40 31.12 0.23 -1.89 16 27 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 28 H 0.01 0.67 7.57 -2.39 -0.02 0.66 16 29 H 0.02 0.96 7.20 -2.39 -0.02 0.95 16 30 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 31 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.42 7.68 8.23 -92.71 -0.76 6.92 16 35 H 0.11 1.40 7.85 -2.39 -0.02 1.39 16 36 H 0.16 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.15 0.77 6.94 -2.39 -0.02 0.76 16 38 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.15 1.05 7.30 -2.38 -0.02 1.04 16 40 H 0.05 1.18 8.09 -2.39 -0.02 1.16 16 41 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 45 H 0.06 1.43 7.45 -2.39 -0.02 1.41 16 Total: -1.00 -82.12 375.28 1.56 -80.56 By element: Atomic # 1 Polarization: 12.74 SS G_CDS: 0.17 Total: 12.91 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 4.82 Total: -1.84 kcal Atomic # 7 Polarization: -89.17 SS G_CDS: -4.44 Total: -93.61 kcal Atomic # 8 Polarization: -40.62 SS G_CDS: 0.45 Total: -40.17 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 1.88 Total: 46.78 kcal Atomic # 16 Polarization: -3.31 SS G_CDS: -1.32 Total: -4.63 kcal Total: -82.12 1.56 -80.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361668053.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.380 kcal (2) G-P(sol) polarization free energy of solvation -82.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds