Wall clock time and date at job start Tue Mar 31 2020 15:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86807 * 120.00234 * 2 1 4 4 H 1.48505 * 109.47107 * 270.00037 * 3 2 1 5 5 H 1.48498 * 109.47190 * 29.99831 * 3 2 1 6 6 H 1.48496 * 109.47303 * 150.00273 * 3 2 1 7 7 C 1.38820 * 120.00097 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00283 * 197.25961 * 7 2 1 9 9 N 1.36934 * 119.99352 * 17.26040 * 7 2 1 10 10 C 1.46932 * 120.62713 * 207.39446 * 9 7 2 11 11 C 1.53189 * 108.89486 * 233.67791 * 10 9 7 12 12 C 1.53045 * 109.30964 * 305.29189 * 11 10 9 13 13 N 1.46499 * 109.46217 * 181.38826 * 12 11 10 14 14 C 1.34768 * 120.00306 * 154.99730 * 13 12 11 15 15 O 1.21594 * 120.00282 * 0.02562 * 14 13 12 16 16 C 1.47509 * 119.99893 * 179.97438 * 14 13 12 17 17 C 1.38674 * 120.34436 * 0.02562 * 16 14 13 18 18 C 1.38983 * 120.63601 * 179.97438 * 17 16 14 19 19 C 1.36212 * 121.14527 * 359.97438 * 18 17 16 20 20 C 1.40693 * 120.16764 * 359.97438 * 19 18 17 21 21 N 1.33764 * 120.97928 * 180.02562 * 20 19 18 22 22 C 1.31324 * 119.73421 * 179.97438 * 21 20 19 23 23 C 1.39643 * 120.68272 * 359.97438 * 22 21 20 24 24 N 1.31441 * 120.64526 * 359.97438 * 23 22 21 25 25 C 1.33493 * 119.72165 * 359.81693 * 24 23 22 26 26 C 1.53044 * 109.53742 * 61.36557 * 12 11 10 27 27 C 1.47199 * 120.82140 * 27.53341 * 9 7 2 28 28 H 0.97008 * 119.99917 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.58807 * 113.81287 * 10 9 7 30 30 H 1.09001 * 109.58443 * 353.53762 * 10 9 7 31 31 H 1.08994 * 109.49818 * 65.24182 * 11 10 9 32 32 H 1.09000 * 109.49753 * 185.34555 * 11 10 9 33 33 H 1.09005 * 109.46192 * 301.34630 * 12 11 10 34 34 H 0.97000 * 119.99313 * 334.99999 * 13 12 11 35 35 H 1.08000 * 119.67459 * 359.97430 * 17 16 14 36 36 H 1.08004 * 119.42892 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.91950 * 179.97438 * 19 18 17 38 38 H 1.08000 * 119.65475 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.67618 * 180.02562 * 23 22 21 40 40 H 1.08997 * 109.49664 * 58.58635 * 26 12 11 41 41 H 1.09005 * 109.49458 * 178.68121 * 26 12 11 42 42 H 1.09001 * 109.53355 * 6.53767 * 27 9 7 43 43 H 1.09002 * 109.67913 * 246.23555 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4477 2.6527 0.7000 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2022 -0.0005 8 1 3.0538 -1.2234 0.2769 9 7 1.3717 -2.3612 -0.3529 10 6 1.8234 -3.6553 0.1762 11 6 2.0757 -4.6095 -0.9954 12 6 0.8160 -4.6926 -1.8607 13 7 1.0425 -5.6298 -2.9636 14 6 -0.0023 -6.2527 -3.5440 15 8 -1.1330 -6.0364 -3.1524 16 6 0.2257 -7.1959 -4.6549 17 6 1.5122 -7.4474 -5.1075 18 6 1.7340 -8.3354 -6.1534 19 6 0.6998 -8.9812 -6.7606 20 6 -0.6219 -8.7574 -6.3336 21 7 -1.6496 -9.3832 -6.9180 22 6 -2.8735 -9.1564 -6.4994 23 6 -3.1143 -8.2682 -5.4491 24 7 -2.1200 -7.6428 -4.8593 25 6 -0.8671 -7.8609 -5.2652 26 6 0.4915 -3.3081 -2.4265 27 6 0.2213 -2.3393 -1.2711 28 1 -0.4850 0.8401 0.0004 29 1 1.0553 -4.0719 0.8279 30 1 2.7458 -3.5175 0.7404 31 1 2.9055 -4.2369 -1.5959 32 1 2.3195 -5.6002 -0.6118 33 1 -0.0192 -5.0417 -1.2535 34 1 1.9444 -5.8021 -3.2762 35 1 2.3496 -6.9485 -4.6426 36 1 2.7440 -8.5165 -6.4906 37 1 0.8949 -9.6669 -7.5720 38 1 -3.7023 -9.6621 -6.9724 39 1 -4.1273 -8.0941 -5.1177 40 1 1.3363 -2.9478 -3.0134 41 1 -0.3922 -3.3726 -3.0614 42 1 0.0872 -1.3312 -1.6633 43 1 -0.6788 -2.6470 -0.7390 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000388379902.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:07:58 Heat of formation + Delta-G solvation = 65.244923 kcal Electronic energy + Delta-G solvation = -26883.496275 eV Core-core repulsion = 23122.669444 eV Total energy + Delta-G solvation = -3760.826831 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 326.148 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72876 -39.63555 -37.71694 -37.10344 -34.92943 -34.37469 -32.33297 -31.13419 -31.08116 -29.95270 -29.25876 -25.81422 -25.23090 -24.38340 -23.66388 -22.22320 -21.74235 -20.36597 -19.43175 -18.98269 -18.45525 -17.27915 -16.83424 -16.37373 -15.71346 -15.46889 -15.32720 -14.83464 -14.53808 -14.42354 -14.32533 -13.88794 -13.59598 -13.47161 -12.97420 -12.63167 -12.57591 -12.37937 -12.17960 -12.11987 -11.84792 -11.79029 -11.47649 -11.11361 -10.90742 -10.73644 -10.37867 -10.21586 -10.06377 -9.92012 -9.73912 -9.56940 -9.34174 -9.09239 -8.94486 -8.65133 -8.40317 -6.68423 -5.77116 -3.19698 -0.30102 0.22863 1.42395 2.32499 3.19237 3.22783 3.38943 3.45384 3.46841 3.68670 3.83541 3.86166 4.02163 4.33789 4.46149 4.50323 4.63502 4.74146 4.88377 5.01155 5.27122 5.37045 5.41656 5.46623 5.47213 5.54901 5.64349 5.78103 5.83077 5.84846 6.09473 6.23341 6.25042 6.36110 6.45066 6.62067 6.66186 6.79429 6.92826 6.95508 7.00281 7.39251 7.49639 7.68913 7.73991 7.80607 8.44170 8.46090 9.21654 9.85265 10.42331 11.31501 Molecular weight = 326.15amu Principal moments of inertia in cm(-1) A = 0.024248 B = 0.002584 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.460428 B =10833.242793 C =11317.030883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.902 3.098 4 H -0.288 1.288 5 H -0.291 1.291 6 H -0.279 1.279 7 C -0.254 4.254 8 H 0.066 0.934 9 N -0.593 5.593 10 C 0.148 3.852 11 C -0.139 4.139 12 C 0.153 3.847 13 N -0.722 5.722 14 C 0.546 3.454 15 O -0.496 6.496 16 C -0.090 4.090 17 C -0.065 4.065 18 C -0.106 4.106 19 C -0.063 4.063 20 C 0.070 3.930 21 N -0.428 5.428 22 C 0.076 3.924 23 C 0.075 3.925 24 N -0.384 5.384 25 C 0.111 3.889 26 C -0.146 4.146 27 C 0.173 3.827 28 H 0.254 0.746 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.391 0.609 35 H 0.141 0.859 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.090 0.910 43 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.117 -20.412 -14.435 25.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.732 3.268 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.383 4.383 8 H 0.084 0.916 9 N -0.316 5.316 10 C 0.021 3.979 11 C -0.179 4.179 12 C 0.050 3.950 13 N -0.374 5.374 14 C 0.331 3.669 15 O -0.370 6.370 16 C -0.095 4.095 17 C -0.086 4.086 18 C -0.126 4.126 19 C -0.083 4.083 20 C -0.054 4.054 21 N -0.142 5.142 22 C -0.100 4.100 23 C -0.100 4.100 24 N -0.097 5.097 25 C -0.015 4.015 26 C -0.186 4.186 27 C 0.047 3.953 28 H 0.064 0.936 29 H 0.038 0.962 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.225 0.775 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.161 0.839 38 H 0.193 0.807 39 H 0.194 0.806 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.108 0.892 43 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges 0.394 -20.026 -14.064 24.475 hybrid contribution 0.747 0.724 -0.307 1.085 sum 1.141 -19.302 -14.371 24.092 Atomic orbital electron populations 1.70038 1.05257 1.25534 1.53669 1.25054 0.95279 0.98433 1.00908 0.86291 0.79082 0.83725 0.77656 1.21486 1.21771 1.20451 1.19182 0.92661 0.84836 1.41658 0.91584 1.44166 1.35503 1.01307 1.50590 1.20831 0.97975 0.86772 0.92308 1.22341 0.96628 0.99752 0.99148 1.21057 0.98793 0.88719 0.86440 1.46272 1.08762 1.45360 1.37036 1.17885 0.85605 0.80887 0.82505 1.90871 1.21780 1.62351 1.62007 1.20101 0.92146 0.99019 0.98225 1.21595 0.95867 0.95840 0.95256 1.20936 0.99978 0.96010 0.95632 1.20967 0.89523 0.98587 0.99228 1.19544 0.94611 0.96289 0.94958 1.68694 0.99422 1.20425 1.25674 1.24117 0.95132 0.95885 0.94842 1.24315 1.00211 0.92557 0.92952 1.69060 0.98286 1.18411 1.23981 1.19341 0.92230 0.95621 0.94281 1.22557 1.00486 0.95057 1.00530 1.20805 0.88575 0.98234 0.87714 0.93578 0.96184 0.92357 0.91853 0.92603 0.89891 0.77468 0.84113 0.83924 0.83940 0.80729 0.80649 0.92705 0.92791 0.89231 0.96071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.48 11.18 55.49 0.62 -25.85 16 2 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 3 Si 0.90 21.72 29.59 -169.99 -5.03 16.69 16 4 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.25 -6.93 9.59 -15.06 -0.14 -7.08 16 8 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 9 N -0.59 -14.84 3.01 -172.09 -0.52 -15.35 16 10 C 0.15 3.05 6.50 -3.71 -0.02 3.02 16 11 C -0.14 -2.28 5.55 -26.61 -0.15 -2.43 16 12 C 0.15 2.69 2.42 -67.89 -0.16 2.52 16 13 N -0.72 -10.36 5.03 -54.81 -0.28 -10.64 16 14 C 0.55 8.81 7.73 -12.49 -0.10 8.71 16 15 O -0.50 -10.06 14.85 5.28 0.08 -9.98 16 16 C -0.09 -1.18 5.90 -104.62 -0.62 -1.80 16 17 C -0.06 -0.58 9.52 -39.14 -0.37 -0.95 16 18 C -0.11 -0.75 9.93 -40.03 -0.40 -1.14 16 19 C -0.06 -0.54 9.97 -39.38 -0.39 -0.94 16 20 C 0.07 0.82 6.59 -84.81 -0.56 0.26 16 21 N -0.43 -4.65 10.46 -10.82 -0.11 -4.76 16 22 C 0.08 0.65 11.21 -17.24 -0.19 0.45 16 23 C 0.07 0.77 11.22 -17.19 -0.19 0.57 16 24 N -0.38 -5.68 8.56 -10.59 -0.09 -5.77 16 25 C 0.11 1.54 6.60 -84.52 -0.56 0.98 16 26 C -0.15 -2.96 5.65 -26.61 -0.15 -3.11 16 27 C 0.17 4.25 5.33 -3.56 -0.02 4.23 16 28 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 29 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 1.15 7.93 -51.93 -0.41 0.74 16 31 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 34 H 0.39 4.23 6.63 -40.82 -0.27 3.96 16 35 H 0.14 0.87 6.37 -52.49 -0.33 0.53 16 36 H 0.14 0.52 8.06 -52.48 -0.42 0.09 16 37 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.18 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.18 1.19 8.06 -52.49 -0.42 0.76 16 40 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 42 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 43 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 354.45 15.07 5.34 5.34 Total: -1.00 -35.82 354.45 -9.60 -45.42 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.50 Total: 1.62 kcal Atomic # 6 Polarization: 7.40 SS G_CDS: -4.11 Total: 3.28 kcal Atomic # 7 Polarization: -62.00 SS G_CDS: -0.38 Total: -62.37 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.08 Total: -9.98 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.82 -9.60 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000388379902.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.664 kcal (2) G-P(sol) polarization free energy of solvation -35.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds